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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049091 ID=TCONS_00049091|Name=TCONS_00049091|organism=Clytia hemisphaerica|type=transcript|length=3564bpRun BLAST on NCBI protein sequence of TCONS_00049091-protein >TCONS_00049091-protein ID=TCONS_00049091-protein|Name=TCONS_00049091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1140bp LQLAVNSPDGSFMQTESAQIPTEDVLSIMKWLNKPDEVSTCTLSISNVKSRun BLAST on NCBI transcript from alignment at scaffold_151:71618..100858- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049091 ID=TCONS_00049091|Name=TCONS_00049091|organism=Clytia hemisphaerica|type=transcript|length=29241bp|location=Sequence derived from alignment at scaffold_151:71618..100858- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_151:71618..100858- >TCONS_00049091 ID=TCONS_00049091|Name=TCONS_00049091|organism=Clytia hemisphaerica|type=CDS|length=68460bp|location=Sequence derived from alignment at scaffold_151:71618..100858- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049091 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2) HSP 1 Score: 207.608 bits (527), Expect = 6.210e-54 Identity = 183/720 (25.42%), Postives = 315/720 (43.75%), Query Frame = 3
Query: 87 MKWLNKPDEVST--CTLSISNVKSSILSISLSRDGKHVACGTEDGHVFVYDKESSKEIHSFSGHSGAITACCY-AGDKLCSASTDSNISIWDLNTGHRLHSLSDHREPVTGCVVTRDGKLLVTVSLDKTARLWNVNDGSAAGFLAGLDSPLNCVAMDTEDKHAALGGWNKCIVIWNILENKKIASYNKGHKSSVRALAYSPNGSYLASSGLNGELLLWSTQSGAMIGQLSELKHHVRHISFSTDGLQLFGASDDSSIKIWSGTLGCPERQIDDMDEDDGNTDVSKQHNEYALSVCVSD--HLVAIGYNSGKVSVYRNKGSRYHVAGHERLISTWKAHSSSVRSMCFLRSDSSEYKKDLVTASDDYKIIQWALKGRDHKQARLLEGHTNGVTCVRAKEAYIISSSKDCSLRVWNAISFEAVGHRGNRAQQPQQESSVATLHGHTGIVTGCDLSPCETKAISCGHDRALFIWDLTNFTSLCVVHN---AHGDGITACCWSDVGTYVVTGSNDFKLKLWNTKVLIENKDEMSKLKERSTFIGHTTTINDVKYKFGCVVSSSADGHVKVWNQNGVEITTFQPHKTRINSADLWAPGVSIEDEEQGTAWSTRTKDLTSIQQRVRAKTPKNLQDILLFTASDDGTTQSWRPFKPDLLNALYGHSNVV-SEVKQGSNGELISGSLDETIKVWDFKLSKEEDNG--PAHSGEVTSIALHNNDTIATAG 2213
++WLNKP + + V SS +++ S +G+ A GT +G V++ D + +E S I+AC + + D L + D + +WDL G R+ H+ +TGC ++ D +LL TV L +LW+ G A F LNCVA E + A G W I + + + K+ +S+R LA++ G +A L+ + LW+ + GA + V F G QL A +D +++WSG+LG P + G+ +S ALSV +S VA+GY + + +Y+ G +A +V ++ +L K LV+ ++D + WALK + LL V + + + S+S+D ++++W R + + L GH G V+ C S + G DR+L WD+ + ++H+ H D +T C W+ +++ S+D + LW+ E+ + + F+GH + ++ V VVS S DG +KVW+ GVE+T+ H I+ ++E G S ++L+ T DG T+ W P + L GHS V + ++G +++ S D ++++W ++ KE D+ P S VT++A + ++A +G
Sbjct: 1654 LRWLNKPRTMKNQQSSSLSLAVSSSPTAVAFSTNGQRAAVGTANGTVYLLDLRTWQEEKSVVSGCDGISACLFLSDDTLFLTAFDGLLELWDLQHGCRVLQTKAHQYQITGCCLSPDCRLLATVCLGGCLKLWDTVRGQLA-FQHTYPKSLNCVAFHPEGQVIATGSWAGSISFFQV-DGLKVTKDLGAPGASIRTLAFNVPGGVVAVGRLDSMVELWAWREGARLAAFPAHHGFVAAALFLHAGCQLLTAGEDGKVQVWSGSLGRPRGHL-------GSLSLSP-----ALSVALSPDGDRVAVGYRADGIRIYKISSGSQGAQG--------QALDVAVSALAWLSP------KVLVSGAEDGSLQGWALKECSLQSLWLLSRFQKPVLGLATSQELLASASEDFTVQLWPRQLL-------TRPHKAEDFPCGTELRGHEGPVSCCSFSTDGGSLATGGRDRSLLCWDVRTPKTPVLIHSFPACHRDWVTGCAWTK-DNLLISCSSDGSVGLWDP----ESGQRLGQ------FLGHQSAVSAVAAVEEHVVSVSRDGTLKVWDHQGVELTSIPAHSGPISHC-----AAAMEPRAAGQPGS----------------------ELLVVTVGLDGATRLWHPLLVCQTHTLLGHSGPVRAAAVSETSGLMLTASEDGSVRLW--QVPKEADDTCIPRSSAAVTAVAWAPDGSMAVSG 2298 The following BLAST results are available for this feature:
BLAST of TCONS_00049091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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