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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049092 ID=TCONS_00049092|Name=TCONS_00049092|organism=Clytia hemisphaerica|type=transcript|length=4836bpRun BLAST on NCBI protein sequence of TCONS_00049092-protein >TCONS_00049092-protein ID=TCONS_00049092-protein|Name=TCONS_00049092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1582bp MGKLELRPNLKSKHNLVQDDLGSNTIPLKKANMLEDPQSSLTKQKTELVTRun BLAST on NCBI transcript from alignment at scaffold_151:101682..143452- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049092 ID=TCONS_00049092|Name=TCONS_00049092|organism=Clytia hemisphaerica|type=transcript|length=41771bp|location=Sequence derived from alignment at scaffold_151:101682..143452- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_151:101682..143452- >TCONS_00049092 ID=TCONS_00049092|Name=TCONS_00049092|organism=Clytia hemisphaerica|type=CDS|length=132888bp|location=Sequence derived from alignment at scaffold_151:101682..143452- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049092 vs. Swiss-Prot (Human)
Match: TEP1 (Telomerase protein component 1 OS=Homo sapiens GN=TEP1 PE=1 SV=2) HSP 1 Score: 644.04 bits (1660), Expect = 0.000e+0 Identity = 427/1373 (31.10%), Postives = 691/1373 (50.33%), Query Frame = 3
Query: 843 LINMVSMSLLHAPKIGDVMDQTRIXXXXXXXXXXXXDPEFILKLALYTRKVLNVRVVSTFMVAFAAYVQECRPYLKKYFNASIVLPSDWIGAAELYQTFFDSTI-KFGSIPTVLRKVMIEKFSSFDEYQLAKYNKEKSQNKAKAVTF--------------YPHMYEFMRSESQLLDEDGDNIKEYE-LKSLSLKQLIRKLHISQPSQYVMCLVGKKYPSSIQEFYQSHLPGNFDEGRAGKRMKLKTPETWETQVSLKGNKATTWQDLLDHKKLPFMAMLRNLRNMISAGMKEKYHNMIIHRLTDEKSVKNSKQFPFRFLSAYDIIELMEKSLE-------TGEDLASVSYKKNKTNTTR--------------SNSKPLLYSH------------------SLLMRYKKALEKSLKISTLHNISPIPGMTVXXXXXXXXXXXQILTKSISPVQRNSLNMGLLLGVMCNFHCEESLFILNDRNKGFTILXXXXXXXXIMDSVHEAMEEAQHIWRREPIVRERKEVNQLDEE-------LCDYLGQFVGQRRVINNFYMVGTGSGWTKGDYLKKFVDIYRKEVNPTTLVIRQCIQSDSYMKNCLDSDYDVFVVGYSDQVLKYLGERGTGRQLTAVENIDMTFNL----DDIKVRRKKRLADDSSKVKIERPILAWKTIRVFISSTFRDMHGERDLLTKYVFPELRCWCYNYCLNLYEVDLRWGITERQSQSDKQLELCLSEVQKADLFVGMLGERFGWVPTKYKVEDEENLGWVKDMPKGCSMTELEMRGFLREDSN---ASKALFLFRDPEFLSDVPPKVLDEFVTQDSTATERIQQLKEFIKRQRNVQLIDNYPCKYGGKVDNKVYTADLEDFGRSVLTSVWEIIKTQYIDTQNNENVETSTLSIADK---HVTFAKENGDQFVGRKSLLTKVSSLLHDEXXXXXXXXXXXXXXXXXXXXXAFMAKLVQNMKVPACC--------YFSEAGTEYQHLSVMLKYIFHEINTEFDVGMPLPENEREQKVQFEN-LLKSVSKVLRRSHRYYIFVDGLESMEKGRYAHVLDWIPDRIPQGIYLVISCLENGPVSRLLSNHQQCLANIKLGPMEHPDRTVFVRNILQKYGKSLDESPFNNQMRLLLSKKGAESPLYLKLACEEIRLFGIYEKVSEYLKALAQTTPQLIEFVLNRIEKEYGSKIVKNVFTLLHHSRQGLTEDELYETLNFLANV----QEWNETSLHDSTCYFDKDMVAQKVPRATFVCLCREMKTFLNE---DMQSGTITLMHKEIIAVIEKRYASDARTSSLIHFVLASFYRKQCDPNNDMKWHGKDIKALTELPFHMASS---GLLWDDFKEMMTSVYFIKAKVE 4688
L++++ +L+ + + D T + + +E++ ++PEFILK +LY R+ LNVR V+ ++A AA++ CRP+L++YF A + LPSDWI AELYQ+ + K +P LR M +KF+ FDEYQLAKYN K + K +P F+R E + ++ GD + E + +LK+L+++LHI +P+Q+V L+G +YPS++Q F +S LPG +D RAGKRMKL PETWE ++SL+GNKA+ W++L+++ KLPFMAMLRNL N++ G+ ++H +I+ RL KSV +S+QFPFRFL+A+D I+ +E L + L +N+ N R + P+LY +L RY++ALE ++ +S H++ +PG TV++ D + L +P Q LN LLL M E+ +L D++ A+ +A+ + I + + +V + DE YL GQR ++ ++G + +Y + VN L + ++ Y+ L+ + DV + G +D +LK++ E G L V +D F + V+ + L +D+ W++IR+FISSTFRDMHGERDLL + V P L+ + ++L+ +DLRWG+TE +++ ++QLE+CL EV+ A LFVG+LG R+G++P Y + D + W + P G S+TE+E+ FL + +++AL FRD FLS VP +FV++ A RI +LK ++ RQ+ + YPC++GG + Y LE+FG+ VL VW +I+ Y+ Q +E +SI D TF + R LL L + + + G+SG GK+AF+A LV ++ P +FS A + +L+ + + + LP R + + LL ++ L + +DG + + + DWIP ++P+ ++LV+S + + L Q + LGP+E R VR L YGK L+ESPFNNQMRLLL K+ + PLYL+L + +RLF +YE+VSE L+ L T P L++ +L+ +EKE+G ++ T L +R GLT D+L+ L+ + + W E ++ P F CL + +++ L E + + L + ++ Y H ++A+ K CD + + +AL +LP+H+ S GLL + +T+++ + A +E
Sbjct: 248 LLSLLCSTLVSEVNMNNTSDPTLAAIFEICRELALLEPEFILKASLYARQQLNVRNVANNILAIAAFLPACRPHLRRYFCAIVQLPSDWIQVAELYQSLAEGDKNKLVPLPACLRTAMTDKFAQFDEYQLAKYNPRKHRAKRHPRRPPRSPGMEPPFSHRCFPRYIGFLREEQRKFEKAGDTVSEKKNPPRFTLKKLVQRLHIHKPAQHVQALLGYRYPSNLQLFSRSRLPGPWDSSRAGKRMKLSRPETWERELSLRGNKASVWEELIENGKLPFMAMLRNLCNLLRVGISSRHHELILQRLQHAKSVIHSRQFPFRFLNAHDAIDALEAQLRNQALPFPSNITLMRRILTRNEKNRPRRRFLCHLSRQQLRMAMRIPVLYEQLKREKLRVHKARQWKYDGEMLNRYRQALETAVNLSVKHSLPLLPGRTVLVYLTDANADR--LCPKSNP-QGPPLNYALLLIGMMITRAEQVDVVLCGG-----------------DTLKTAVLKAEEGILKTAI-KLQAQVQEFDENDGWSLNTFGKYLLSLAGQRVPVDRVILLGQS---MDDGMINVAKQLYWQRVNSKCLFVGILLRRVQYLSTDLNPN-DVTLSGCTDAILKFIAEHGASHLLEHVGQMDKIFKIPPPPGKTGVQSLRPLEEDTPSPLAPVSQQGWRSIRLFISSTFRDMHGERDLLLRSVLPALQARAAPHRISLHGIDLRWGVTEEETRRNRQLEVCLGEVENAQLFVGILGSRYGYIPPSYNLPDHPHFHWAQQYPSGRSVTEMEVMQFLNRNQRLQPSAQALIYFRDSSFLSSVPDAWKSDFVSESEEAARRISELKSYLSRQKGIT-CRRYPCEWGGVAAGRPYVGGLEEFGQLVLQDVWNMIQKLYL--QPGALLE-QPVSIPDDDLVQATFQQLQKPPSPARPRLLQDTVQRL-----MLPHGRLSLVTGQSGQGKTAFLASLVSALQAPDGAKVASLVFFHFSGARPDQGLALTLLRRLCTYLRGQLKEPGALPSTYRSLVWELQQRLLPKSAESLHPGQTQVLIIDGADRLVDQNGQLISDWIPKKLPRCVHLVLSVSSDAGLGETLEQSQGAHV-LALGPLEASARARLVREELALYGKRLEESPFNNQMRLLLVKRESGRPLYLRLVTDHLRLFTLYEQVSERLRTLPATVPLLLQHILSTLEKEHGPDVLPQALTALEVTRSGLTVDQLHGVLSVWRTLPKGTKSWEEAVAAGNS--------GDPYPMGPFACLVQSLRSLLGEGPLERPGARLCLPDGPLRTAAKRCYGKRPGLEDTAHILIAAQLWKTCDADASGTFRSCPPEALGDLPYHLLQSGNRGLL----SKFLTNLHVVAAHLE 1573 The following BLAST results are available for this feature:
BLAST of TCONS_00049092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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