TCONS_00049096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049096
Unique NameTCONS_00049096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049096 ID=TCONS_00049096|Name=TCONS_00049096|organism=Clytia hemisphaerica|type=transcript|length=759bp
GTCCCATTTCAAAAAGAGCCATTTTATTCGCAAATTTTGGAAAGAGAATT
AACAGGAAATGAGTTTCGTACAcgctttttatttataagaatggtgtaaa
ttcatttcatcatggatattcttaacttttttgggaaaatcatcctaaaa
tgttcttacagcattcttagcattattcttaattttttggccattttcat
catggacattcttataaagtgtattcttataaaaaaagcgtgtattgcaG
ATTACCCGCTTTGTAAATCAATCACCTAATTCATAGATCCAACAACAATC
GTTGCAATATCCTCAGGTAATAAATTTCGTcctttttcactcaaaaaaga
ACGTTTCTCCACTATCTCATAAATCCCTCTCCTTTGTTCATCAGTCCATT
TCTCAAAAGGTTTTTGAGTTTGAAAAGAAAGATATGGTAGCGGTGTACCA
TTCTTGAGATAGTCAGTCACATCATAACATAGAACCTCATCTTTATTTAT
CTCACATTTATAAGGTATGTTCAGGCCATCCAGCTCACGAATAATATCAA
GATGAGACAAAGCGTAGTTACTAGTCTGTTCTCTGAATTCTATTGATGAT
GTTTGAGCCATTAAGGCATAAAGCTCAGCACCAACTTCTTCAGTTTGATT
GAAAATAATGATTCGACCTCCCTGGCTAAGCATTGATCTCGCGTTTTGAA
TCGTTAAGCCTGGATAGTCAACATAATATAACACACTGGCCATAAGAATT
ACATcgaac
Run BLAST on NCBI

protein sequence of TCONS_00049096-protein

>TCONS_00049096-protein ID=TCONS_00049096-protein|Name=TCONS_00049096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
FDVILMASVLYYVDYPGLTIQNARSMLSQGGRIIIFNQTEEVGAELYALM
AQTSSIEFREQTSNYALSHLDIIRELDGLNIPYKCEINKDEVLCYDVTDY
LKNGTPLPYLSFQTQKPFEKWTDEQRRGIYEIVEKRSFLSEKGRNLLPED
IATIVVGSMN
Run BLAST on NCBI

transcript from alignment at scaffold_151:61043..61801

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049096 ID=TCONS_00049096|Name=TCONS_00049096|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at scaffold_151:61043..61801 (Clytia hemisphaerica)
gttcgATGTAATTCTTATGGCCAGTGTGTTATATTATGTTGACTATCCAG
GCTTAACGATTCAAAACGCGAGATCAATGCTTAGCCAGGGAGGTCGAATC
ATTATTTTCAATCAAACTGAAGAAGTTGGTGCTGAGCTTTATGCCTTAAT
GGCTCAAACATCATCAATAGAATTCAGAGAACAGACTAGTAACTACGCTT
TGTCTCATCTTGATATTATTCGTGAGCTGGATGGCCTGAACATACCTTAT
AAATGTGAGATAAATAAAGATGAGGTTCTATGTTATGATGTGACTGACTA
TCTCAAGAATGGTACACCGCTACCATATCTTTCTTTTCAAACTCAAAAAC
CTTTTGAGAAATGGACTGATGAACAAAGGAGAGGGATTTATGAGATAGTG
GAGAAACGTtcttttttgagtgaaaaaggACGAAATTTATTACCTGAGGA
TATTGCAACGATTGTTGTTGGATCTATGAATTAGGTGATTGATTTACAAA
GCGGGTAATCtgcaatacacgctttttttataagaatacactttataaga
atgtccatgatgaaaatggccaaaaaattaagaataatgctaagaatgct
gtaagaacattttaggatgattttcccaaaaaagttaagaatatccatga
tgaaatgaatttacaccattcttataaataaaaagcgTGTACGAAACTCA
TTTCCTGTTAATTCTCTTTCCAAAATTTGCGAATAAAATGGCTCTTTTTG
AAATGGGAC

Coding sequence (CDS) from alignment at scaffold_151:61043..61801

>TCONS_00049096 ID=TCONS_00049096|Name=TCONS_00049096|organism=Clytia hemisphaerica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_151:61043..61801 (Clytia hemisphaerica)
ttcgATGTAATTCTTATGGCCAGTGTGTTATATTATGTTGACTATCCAGG
CTTAACGATTCAAAACGCGAGATCAATGCTTAGCCAGGGAGGTCGAATCA
TTATTTTCAATCAAACTGAAGAAGTTGGTGCTGAGCTTTATGCCTTAATG
GCTCAAACATCATCAATAGAATTCAGAGAACAGACTAGTAACTACGCTTT
GTCTCATCTTGATATTATTCGTGAGCTGGATGGCCTGAACATACCTTATA
AATGTGAGATAAATAAAGATGAGGTTCTATGTTATGATGTGACTGACTAT
CTCAAGAATGGTACACCGCTACCATATCTTTCTTTTCAAACTCAAAAACC
TTTTGAGAAATGGACTGATGAACAAAGGAGAGGGATTTATGAGATAGTGG
AGAAACGTtcttttttgagtgaaaaaggACGAAATTTATTACCTGAGGAT
ATTGCAACGATTGTTGTTGGATCTATGAATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031201XLOC_031201Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049096-proteinTCONS_00049096-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049096-exon-scaffold_151-1491911889:61043..61801TCONS_00049096-exon-scaffold_151-1491911889:61043..61801Clytia hemisphaericaexon
TCONS_00049096-exon-scaffold_151-1510915933:61043..61801TCONS_00049096-exon-scaffold_151-1510915933:61043..61801Clytia hemisphaericaexon
TCONS_00049096-exon-scaffold_151-1575043694:61043..61801TCONS_00049096-exon-scaffold_151-1575043694:61043..61801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:61043..61801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.813671	0.588825	0.495449	0.667043	1.42114	1.04196	1.86688	0.969293	0.505375	0.703833	0.731295	0.849128	0.613868	0.504263	0.746703	1.15481	1.40917	0.965629	0.222563	0.227643	1.11217	1.16041	0.985745	0.700684	0.555813	0.750134	1.22531	0.519017	0.704242	0.625611
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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