|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049097 ID=TCONS_00049097|Name=TCONS_00049097|organism=Clytia hemisphaerica|type=transcript|length=840bp
gattGCTAGGTAAAAGAAACAGAGCAAAATCAAAATCAGGACAAGCAGGA
ATGGAGAATCAAAATACCACTGACAgcttttttaaccaattagAAGACCG
AATGATCCCGCTATACGCTCATATATTGGTATTGATACTCTCAATCATTA
CAAATGCTATCATGATTATCGCATTGGTCAAAACGAACAACAAAACATCT
GGGAAACTGTTCATAGCATTATGCATATGCGATGTTTCATACTTATCTTT
GTATTTCATTTTGAGCTCAGAGAGTTTTCACAAAGACAATTGGCTAACGA
TTGCGATTTTCAATTTGGGGAATTTTTTCCAGTTCTTAGGCGTCGATTTA
TTTTTACTAATAACAATTTTAAGATATCTTTCCTTAATCAAACCTTTTAG
ACCTTTAGGGTCGAAATTCGTCCGGGTATTTATCGCCGTATCGTGTTTAC
TTAGTTGTGTGTACCCAGCTCTTTTTGACGTCATGTTAGCCCTTGAGGCT
ATGGAGCTGATGAATGTCATCGAGGTATTATCCGGGGCGCTCCTATTTCT
AACTTTGGTGGTAATAGTCACTTTGAATATGTTATCGTATTTCCATCTTA
GAAGACTTGGAAAGTGTCAAAATCCATCCATCACTGCTAATGGAAAAAAC
ATTAACATCCAAGAAGAAAAGTCAAGGAGTCAAAAGTTGAAGAGCATCAA
GACTTTATTACTAATCACCTTTTTCTACGTGGTTTGTTATTTTCCGAACA
CTTTTGGAATGGTTTTTAAGATACCTTCAGCTGAGGGCATATTTGGTGCA
TTGTTCGGAGTGGCCCTCATGATAAACAGTTCTTTGAATT Run BLAST on NCBI protein sequence of TCONS_00049097-protein >TCONS_00049097-protein ID=TCONS_00049097-protein|Name=TCONS_00049097-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
LLGKRNRAKSKSGQAGMENQNTTDSFFNQLEDRMIPLYAHILVLILSIIT
NAIMIIALVKTNNKTSGKLFIALCICDVSYLSLYFILSSESFHKDNWLTI
AIFNLGNFFQFLGVDLFLLITILRYLSLIKPFRPLGSKFVRVFIAVSCLL
SCVYPALFDVMLALEAMELMNVIEVLSGALLFLTLVVIVTLNMLSYFHLR
RLGKCQNPSITANGKNINIQEEKSRSQKLKSIKTLLLITFFYVVCYFPNT
FGMVFKIPSAEGIFGALFGVALMINSSLN Run BLAST on NCBI transcript from alignment at scaffold_151:62059..62898 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049097 ID=TCONS_00049097|Name=TCONS_00049097|organism=Clytia hemisphaerica|type=transcript|length=840bp|location=Sequence derived from alignment at scaffold_151:62059..62898 (Clytia hemisphaerica)
AATTCAAAGAACTGTTTATCATGAGGGCCACTCCGAACAATGCACCAAAT
ATGCCCTCAGCTGAAGGTATCTTAAAAACCATTCCAAAAGTGTTCGGAAA
ATAACAAACCACGTAGAAAAAGGTGATTAGTAATAAAGTCTTGATGCTCT
TCAACTTTTGACTCCTTGACTTTTCTTCTTGGATGTTAATGTTTTTTCCA
TTAGCAGTGATGGATGGATTTTGACACTTTCCAAGTCTTCTAAGATGGAA
ATACGATAACATATTCAAAGTGACTATTACCACCAAAGTTAGAAATAGGA
GCGCCCCGGATAATACCTCGATGACATTCATCAGCTCCATAGCCTCAAGG
GCTAACATGACGTCAAAAAGAGCTGGGTACACACAACTAAGTAAACACGA
TACGGCGATAAATACCCGGACGAATTTCGACCCTAAAGGTCTAAAAGGTT
TGATTAAGGAAAGATATCTTAAAATTGTTATTAGTAAAAATAAATCGACG
CCTAAGAACTGGAAAAAATTCCCCAAATTGAAAATCGCAATCGTTAGCCA
ATTGTCTTTGTGAAAACTCTCTGAGCTCAAAATGAAATACAAAGATAAGT
ATGAAACATCGCATATGCATAATGCTATGAACAGTTTCCCAGATGTTTTG
TTGTTCGTTTTGACCAATGCGATAATCATGATAGCATTTGTAATGATTGA
GAGTATCAATACCAATATATGAGCGTATAGCGGGATCATTCGGTCTTcta
attggttaaaaaagcTGTCAGTGGTATTTTGATTCTCCATTCCTGCTTGT
CCTGATTTTGATTTTGCTCTGTTTCTTTTACCTAGCaatc Coding sequence (CDS) from alignment at scaffold_151:62059..62898 >TCONS_00049097 ID=TCONS_00049097|Name=TCONS_00049097|organism=Clytia hemisphaerica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_151:62059..62898 (Clytia hemisphaerica)
ATTCAAAGAACTGTTTATCATGAGGGCCACTCCGAACAATGCACCAAATA
TGCCCTCAGCTGAAGGTATCTTAAAAACCATTCCAAAAGTGTTCGGAAAA
TAACAAACCACGTAGAAAAAGGTGATTAGTAATAAAGTCTTGATGCTCTT
CAACTTTTGACTCCTTGACTTTTCTTCTTGGATGTTAATGTTTTTTCCAT
TAGCAGTGATGGATGGATTTTGACACTTTCCAAGTCTTCTAAGATGGAAA
TACGATAACATATTCAAAGTGACTATTACCACCAAAGTTAGAAATAGGAG
CGCCCCGGATAATACCTCGATGACATTCATCAGCTCCATAGCCTCAAGGG
CTAACATGACGTCAAAAAGAGCTGGGTACACACAACTAAGTAAACACGAT
ACGGCGATAAATACCCGGACGAATTTCGACCCTAAAGGTCTAAAAGGTTT
GATTAAGGAAAGATATCTTAAAATTGTTATTAGTAAAAATAAATCGACGC
CTAAGAACTGGAAAAAATTCCCCAAATTGAAAATCGCAATCGTTAGCCAA
TTGTCTTTGTGAAAACTCTCTGAGCTCAAAATGAAATACAAAGATAAGTA
TGAAACATCGCATATGCATAATGCTATGAACAGTTTCCCAGATGTTTTGT
TGTTCGTTTTGACCAATGCGATAATCATGATAGCATTTGTAATGATTGAG
AGTATCAATACCAATATATGAGCGTATAGCGGGATCATTCGGTCTTctaa
ttggttaaaaaagcTGTCAGTGGTATTTTGATTCTCCATTCCTGCTTGTC
CTGATTTTGATTTTGCTCTGTTTCTTTTACCTAGCaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049097-exon-scaffold_151-1491911889:62059..62898 | TCONS_00049097-exon-scaffold_151-1491911889:62059..62898 | Clytia hemisphaerica | exon |
| TCONS_00049097-exon-scaffold_151-1510915933:62059..62898 | TCONS_00049097-exon-scaffold_151-1510915933:62059..62898 | Clytia hemisphaerica | exon |
| TCONS_00049097-exon-scaffold_151-1575043694:62059..62898 | TCONS_00049097-exon-scaffold_151-1575043694:62059..62898 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_151 | supercontig | scaffold_151:62059..62898 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
