TCONS_00049099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049099
Unique NameTCONS_00049099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length493

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049099 ID=TCONS_00049099|Name=TCONS_00049099|organism=Clytia hemisphaerica|type=transcript|length=493bp
ACCAGGGCATGATAGTGAGTGCAAAAAGAAgctataagattttttttttt
gcaagacACACTGAAATCTCTAAGCAAGGCAAAGTAGTGGAGTCAAGTCT
CCAGCAACAACAGAACAGTTGAAAAAGTTACATGAGACGAGAAGAAATGA
TACATAGTTACCAACTTATGAGAATGAAAATGCGggacaacaaacaaaca
aagtgaGCGAGAAAATTGAGCTAGAGaaattttttgggcctgaaatGACG
TAAGAATGGCTAAAAACAAtacaaaattagaaataaagcaaaattttcaA
CTAGATAATCGTTTATCTTTATCTTTATAGCATTAGCCTCAATAAATATT
AGGTGTACTGGACATGGTTCATGTAGTACTATTACATCTCTGTCCAACAC
GTATCCGATGTATTGAAACGGACACGGGCAATTGGACGGACCGTTACGGA
GTGTAGAGAAAAAATGAGGAAATGAGTTTGTGCTTGTGGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_151:139035..139527

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049099 ID=TCONS_00049099|Name=TCONS_00049099|organism=Clytia hemisphaerica|type=transcript|length=493bp|location=Sequence derived from alignment at scaffold_151:139035..139527 (Clytia hemisphaerica)
GTTTCCACAAGCACAAACTCATTTCCTCATTTTTTCTCTACACTCCGTAA
CGGTCCGTCCAATTGCCCGTGTCCGTTTCAATACATCGGATACGTGTTGG
ACAGAGATGTAATAGTACTACATGAACCATGTCCAGTACACCTAATATTT
ATTGAGGCTAATGCTATAAAGATAAAGATAAACGATTATCTAGTtgaaaa
ttttgctttatttctaattttgtaTTGTTTTTAGCCATTCTTACGTCatt
tcaggcccaaaaaatttCTCTAGCTCAATTTTCTCGCtcactttgtttgt
ttgttgtccCGCATTTTCATTCTCATAAGTTGGTAACTATGTATCATTTC
TTCTCGTCTCATGTAACTTTTTCAACTGTTCTGTTGTTGCTGGAGACTTG
ACTCCACTACTTTGCCTTGCTTAGAGATTTCAGTGTgtcttgcaaaaaaa
aaaatcttatagcTTCTTTTTGCACTCACTATCATGCCCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031204XLOC_031204Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049099-exon-scaffold_151-1491911889:139035..139527TCONS_00049099-exon-scaffold_151-1491911889:139035..139527Clytia hemisphaericaexon
TCONS_00049099-exon-scaffold_151-1510915933:139035..139527TCONS_00049099-exon-scaffold_151-1510915933:139035..139527Clytia hemisphaericaexon
TCONS_00049099-exon-scaffold_151-1575043694:139035..139527TCONS_00049099-exon-scaffold_151-1575043694:139035..139527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:139035..139527 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.499687	0.487273	0	0	0.168464	0.532489	0	0	0.105269	0.130393	0.759374	0.166394	0.166163	0.172562	0.112403	0.0761237	0.187556	0.797059	0.663972	0.416879	0.241563	0	0.143233	0.130219	0	1.31672	0	0	0.277307	0.141266
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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