TCONS_00049100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049100
Unique NameTCONS_00049100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049100 ID=TCONS_00049100|Name=TCONS_00049100|organism=Clytia hemisphaerica|type=transcript|length=585bp
TTCCCTTTATAAATTCGTATCTATTAATTTCTGGATAATTCTAGACAACT
AGTGACTAGCCAttccaaaaactttttgaagagtgaCTCTTCAAAGTTCA
AAGCTCAAAAGTTCAAAACACAACATTCTGCAACATTTCGAACTCTCTCA
GACTCTCTTGGTACGTTTTAGAATGTTTTCGATTCTGCGATTCTGCGATT
CTGCGTGGTCCTCTCTATCTTTTGTTATGATAGGCACTTCTATATTGTTA
ATAAAAGAGTGCGAGACCTATAAATACGTCGTATTTTAGTTCCGTGATTT
TCCGTAGATGGCATTGCCACCTTTTTCCTCTACCTGGAGCATCTTTTCAA
CCATTCTGTATCTCCTGACAACTTTCNTAGACAACTAGTGACTAGCCAtt
ccaaaaactttttgaagagtgactcttcaaagttcaaagcacaaaataaa
taaaaacacaacATTCTGCAACATTTCGAACTGTCTTGGTACGTTTTAGA
ATGTTTCTAAAGTCacatattttcgaatgttttcgttCGAAATGTAGCAA
AACATCAGTTCCTACTCTTGCCGCCTCTGTTTTTg
Run BLAST on NCBI

transcript from alignment at scaffold_151:145467..146051

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049100 ID=TCONS_00049100|Name=TCONS_00049100|organism=Clytia hemisphaerica|type=transcript|length=585bp|location=Sequence derived from alignment at scaffold_151:145467..146051 (Clytia hemisphaerica)
cAAAAACAGAGGCGGCAAGAGTAGGAACTGATGTTTTGCTACATTTCGaa
cgaaaacattcgaaaatatgtGACTTTAGAAACATTCTAAAACGTACCAA
GACAGTTCGAAATGTTGCAGAATgttgtgtttttatttattttgtgcttt
gaactttgaagagtcactcttcaaaaagtttttggaaTGGCTAGTCACTA
GTTGTCTANGAAAGTTGTCAGGAGATACAGAATGGTTGAAAAGATGCTCC
AGGTAGAGGAAAAAGGTGGCAATGCCATCTACGGAAAATCACGGAACTAA
AATACGACGTATTTATAGGTCTCGCACTCTTTTATTAACAATATAGAAGT
GCCTATCATAACAAAAGATAGAGAGGACCACGCAGAATCGCAGAATCGCA
GAATCGAAAACATTCTAAAACGTACCAAGAGAGTCTGAGAGAGTTCGAAA
TGTTGCAGAATGTTGTGTTTTGAACTTTTGAGCTTTGAACTTTGAAGAGt
cactcttcaaaaagtttttggaaTGGCTAGTCACTAGTTGTCTAGAATTA
TCCAGAAATTAATAGATACGAATTTATAAAGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031205XLOC_031205Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049100-exon-scaffold_151-1491911889:145467..146051TCONS_00049100-exon-scaffold_151-1491911889:145467..146051Clytia hemisphaericaexon
TCONS_00049100-exon-scaffold_151-1510915933:145467..146051TCONS_00049100-exon-scaffold_151-1510915933:145467..146051Clytia hemisphaericaexon
TCONS_00049100-exon-scaffold_151-1575043694:145467..146051TCONS_00049100-exon-scaffold_151-1575043694:145467..146051Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:145467..146051 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.873622	0.884553	0.81406	0.954368	0.898249	0.488231	0.293652	0.188116	0	0.838303	0.286785	0.503637	0.363842	0.441861	0.819261	0.457918	0.443591	0.665422	1.02419	0.572887	0.991832	1.00326	0.680566	0.448873	0.38544	0.330473	0.828929	1.48548	0.478669	0.843168
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top