TCONS_00049101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049101
Unique NameTCONS_00049101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049101 ID=TCONS_00049101|Name=TCONS_00049101|organism=Clytia hemisphaerica|type=transcript|length=352bp
GAAATACACTACCATGCATTCTGTATGTCCACTGTctgaatagaaataga
aatgtccACGATAGAAACGATCTGACAAGTGATTAAAAACAatgttattc
aaatctttcGAAATGAAAAAATAGTGCTTTGTTTTGATAACAAAAACAAG
GAGCCTAAGTATATACTCCTGTACTTCCAAGTTTGTTCGAAGCAGGGATG
ATCCATGGAGCAATCTTTAACAAAAATCCAACCACTATCATTCCAGCATA
CCAGATATGTTTGATTAATTTGTGTGTCTCACCACACCACTGTCCATTCT
TCGACAAATTCATAAAACCATTCGTCAATCTTTGCCCATTTTACCAAAAT
TA
Run BLAST on NCBI

transcript from alignment at scaffold_151:146233..146584

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049101 ID=TCONS_00049101|Name=TCONS_00049101|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at scaffold_151:146233..146584 (Clytia hemisphaerica)
TAATTTTGGTAAAATGGGCAAAGATTGACGAATGGTTTTATGAATTTGTC
GAAGAATGGACAGTGGTGTGGTGAGACACACAAATTAATCAAACATATCT
GGTATGCTGGAATGATAGTGGTTGGATTTTTGTTAAAGATTGCTCCATGG
ATCATCCCTGCTTCGAACAAACTTGGAAGTACAGGAGTATATACTTAGGC
TCCTTGTTTTTGTTATCAAAACAAAGCACTATTTTTTCATTTCgaaagat
ttgaataacatTGTTTTTAATCACTTGTCAGATCGTTTCTATCGTggaca
tttctatttctattcagACAGTGGACATACAGAATGCATGGTAGTGTATT
TC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031206XLOC_031206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049101-exon-scaffold_151-1491911889:146233..146584TCONS_00049101-exon-scaffold_151-1491911889:146233..146584Clytia hemisphaericaexon
TCONS_00049101-exon-scaffold_151-1510915933:146233..146584TCONS_00049101-exon-scaffold_151-1510915933:146233..146584Clytia hemisphaericaexon
TCONS_00049101-exon-scaffold_151-1575043694:146233..146584TCONS_00049101-exon-scaffold_151-1575043694:146233..146584Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:146233..146584 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.747267	0.326962	2.31352	1.32953	0	0.286035	1.69284	1.76077	2.42793	1.90432	0.985829	1.35095	1.83082	1.90608	0.362758	1.52921	2.29481	2.46201	0	0.237317	2.04671	2.56811	1.59065	0.901812	2.17917	0.818967	4.06218	2.87864	0.0504815	0.484086
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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