TCONS_00049109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049109
Unique NameTCONS_00049109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049109 ID=TCONS_00049109|Name=TCONS_00049109|organism=Clytia hemisphaerica|type=transcript|length=295bp
GGAAGAAACTACACATGGAAGAAACTTCACAAAAAGAAAGCGTACATAGC
TATACTGGAAGATGGATGTATTGTTCATCGGGCATTCAAAAAGGTTGGCT
ACAGACCAGTCACTTGAGAAATTTGGGTCACATAATTGTAAAATTTCTTG
TGGATCTTCTGAATACAAACTTAGGAGCTGTGACAAACTTGGAACAAGAT
TTTGGAAACTCTATTAGCAATATCTAATAATTACTTGGACCACTACACAT
GATGGGGAAATACTAAAGTCAATTTTGAATATCTATTACAATAAC
Run BLAST on NCBI

transcript from alignment at scaffold_152:53977..59002+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049109 ID=TCONS_00049109|Name=TCONS_00049109|organism=Clytia hemisphaerica|type=transcript|length=5026bp|location=Sequence derived from alignment at scaffold_152:53977..59002+ (Clytia hemisphaerica)
GGAAGAAACTACACATGGAAGAAACTTCACAAAAAGAAAGCTTACATAGC
TATACTGTAAGTGGCAATCCNATACACATGGAAGAAACTACACATGGAAG
AAACTTCACAAAAAGAAAGCGTACATAGCTATACTGTAAGTGGCAATCCT
GCTATTTTAAACTATTAACTTTTTTCTCCTTACAAGAAAATAGGCTCTaa
tcaaaattgaattttataCAAGCAATGTTTAATGCTTTCATGACCAAGGT
TAAGCTGCCTTTGACAAATACAGAGAAAATTTATACTTGCCACACTACTG
aatgaaaaaatgaatcaattgaATAAGGCCAcgatcacaaataacttgtg
tttgtgtagtttttaggtaaaaaaatgAGTTAGCGGTTGGCAAAAAATTG
TCTGAATCTAAATGAACTTCAAAACTAACAGTTGGGCAGAAATGAAATCT
GACAGAAATTGCAAATAAAGGGCACACTTTTTTGCTGTGTTTGTGTGTGG
AATGTTAGTCACTGTGGTTCTTGgaaccagacgtccgcgctcgataggat
cgatcatcggaacagTTCGATGACgggtcgatatgtgatcgatggattac
ttaacgatccggatgggagatcgatagaggatccatactcaagatttttt
taagctcatGATTAATTATCACAATCGATAAccaatcgattaacaatcga
ttaacaatcgatgacgatctgattaacaatcgatgacgatctgattaaca
atcgatgacgaaccgattaacaatcgatgacgaatcgattaacaatcgat
taacgatcaatgacgaatggatatactcgattgaaatactagctcgataa
tggatcatcgaaggatcgatactcaagactttttaatggctgaatcttcc
atctaTCTCCCAttcggatcgttaagtaatccatcgatccgTCATCAAGC
CATTCCGATGATCGAttctatcgagcgcggacgtctggttgGAATTCTGT
TATGACTAAGGAATAGAGGTAATacggcggtcatcgaaaaaattttctcc
ttgTGTCACCCACCCGCTCATTTTCCGGTGTGGAGATtcgaaagaaatca
aagaaaagcaatttgttcttttatagtgtagcttttaaaaaaaaacctgg
GAATTTTTTCGGCAGCCTGTCCGACCGCCCGCATGTATTTTTAACACCct
ttgcgacgcgaacagaatTTTTTGAATGACTGCCTAAAACATTTCCGCAA
AAACAGGAAATGGAATATTAtctttgttattattttgaaatagaaTTCTT
GTGCAATTATAATCAGACAATACAAACAATAGTTATTTGTGATCTAAGCT
TTATTCTCTTACTGAGAATGATTAATTACATGCTCTCGTGGATTGAGCCC
TACTGCCTTTTGCATGTTCGTCCTTGTGGGTCCCAAAGAAAATCTTGTTT
GTGAAATAATCTTGTGGATCTGGAATGACGTCTGGTATATCCAGATAAAA
TCTTAGGGGTCTAGAAAAATATTGTGGGTAGTTAGTGGCTGCTGCAAAAA
AGATGTGGGCGTGGAAAAAACTGACTATTTTTCACtagaataatttttaa
aagttaagaTATAATGACAAGCATGCATTTCAAAGTACGGGTAATTTGCA
AGAATAATACAAAcatttctattcaataattaAAGTAGGCTTACAAAACC
TTTTCTTGTGAATTTGGAATTAGAAAAATAagtatctaaataaataaaag
aacaaaatgattcaaaattttctggaaaaaaactACAACTTTTACTTTTA
CAGTATACCTATAATATACAATATTcctaaagaaaattaatttttgcatt
TGTGAACCTTAAAATACAATATTTACAAAACtttaatcaaaatatttgag
ataCCTTAAAGGAACAAACTTTGGTGAATTAACACAAAATTCACTGAAAT
AGCTCCTGCCAAATTTAATAATTGATTCACTAATCATTATATCATAAATA
Accaaagtaaataaatattttgtcgattaaaaatcagaacaaaaatcaac
tttttcatcgaaataaaaaaaacaatcaaatattaGAAAGGAGCATTTGC
AGAACcatcaagaagaaaaaatagaTTGTATCGAGTAGCATCTCATAAGA
ATGTAAAATCTCCTAAAAGTCTCATAGTTGCAAAACATTTCAAATGCTAA
AGTAATTGAAATTCCTTTGTCTTTATTTAAAGGGAAGATGGATGTATTGT
TCATCGGGCATTCAAAAAGGTTGGCTACAGACCAGTCACTTGAGAAATTT
GGGTCACATAATTGTAAAATGTAAGtctaaatttttttgagttGGGAAAC
TTTCAAAACGTTTATAAAAGCCATCAAACTAATGGACTCGCTGATAGTTT
AACGGACATGAAtcgtaaaaaaatcaaaattagctATTGTATAGatgttt
atttaattttgtaATCTTTTAAAGGATCAACATTACTTAATTCTgcttaa
ttttgcataatttaaccaaaaaacttgcaaaattaaataaacacAACTGG
CTCAGTAAAGTGtacacttaaaggttttgttttttaataagagttATATT
CTTTGCTCACttatcaattttgatttacaagcgtttttatattgaattga
cacaaatgtggagcaagattggtcggaAAGACTCCTGGTATGAGgcggga
acacttatgtgaaaataaaacctttaaggtgCACTATTGGAACTAGatgt
ctaaaattttgaaattttattctaaaaattcaTGAAGTTTATTTTCCTTT
GTCAGTTTTTCCCGTAGACTTTGTCGAAAACGCTTTAATTTTGCTGTTAT
GCCCTTTTGCACATCTTCCTCCAAATATTCTGGAACTCTGTACTTGCTAT
TGACTTCATTGAGAATGCACGATATAACTCTGTGATCGAATGGTTTAAAT
TTTTGTCGGCCATTGATGTTGCAGGTTAGAATTTCTCTGATGGAAAATTT
GGCTTTGATTAATACAAGTCCGTGATCAGATGCTAACTTGATCATATCCT
TTTTCTCTGATTTAGATATTGTATGATTGATATCACTCTCTTGAGAAGAC
TGGTTTGATGATGGAAGCTGATTTGAATAGTCTTGCTGAAGGTATGAGGC
TCGTTGTTGCTGATTGTTGTGTGGTGACGGCTGTTGTTGATGATGGTTCA
AAGATTGTTGTTGGTGATGGTTTGACGCTCCTTGTTGATGTTGTTGATTG
AGTGAACCTGACAGTAATTCAGGTTGTAGTTGAGCGAGAAAGCTTTGAGC
GAAGTTATCAGTGTGGATATACTTGTCCATTTGTGTAACATCGATGACGC
CTTCGTTGCTGTCCTTACGTGGAGGAGAAGTCAAATTTGTTAAAAGACAT
TTGATTTCTGTCAATTGATTACTCATCTGTTCTTTCCATTCTGTAATGTC
ACGACGTAGATCTTCAATTTGCATGTTTTTGTGATTGAACGGGGTTGATT
GAGTAGAACCAAATAGTCTTGAAAAATCAGGGGTGCCATTTCTTTGGATG
ATGGAATCAACTGTTGGTGATGTTTGTACAGCCACAGCCTGGTTATTTGC
AATTGGtgattttcttgatttcagtTGTCTTGGGCTTTTTGCTGCTGGTG
TAGTAAACGACACATTTGATAATTCTTGACCAAAGGATGGCGAATTAGCT
GTTGAAGACAATGGAGATAACCTGTCCACAGTTGACGGAGTCTCCAGAAG
TTTCGCTTTCGGTGAACGTGGATGTGATGGTAAAGATGATGATGTACACG
AGCTTGACAGTAAAGATGATAATGTTAACGAGCTTGAAGATGACAATGAA
CGTAAACGTGATGGGGACCGAGATAGCGATGGTATCTTTGAAGGTGACCA
TGGTGACAAAGACCGTCGTAAACCTGATTCTGACACCAAAGGCAAGGGTG
ACGGTGACAGTGATGGTGATGATGACTTTCTTTTAGgtttttctaaaaag
tttcGTGGATCTTTTGctttaacctttttctttttggataATACAACCTT
TTCAACTAAGAACCCGTTGAACTTTTCCATCTTACTACTTTGGCGGTGGT
GGAAGGCTTTCACAACATCTTTCTCTCCTTGACTCATTTTTCGAtcctat
aaaaatgaaaacgcGAGCTCTGAATAAAACAAGTCATTATTCTACTANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcctaatcaatgtttttacaatagaattttcaataga
agtgatcgttgaactttgagtaatcagaaaagctgtttttccatctcttt
acattcctctgattcTACTAAATGTAAAAATCCTCTAAAACTGATTTGAA
TTAAGATTATGAATTACTTTCCTGTCAAAATTTGCCTGTCCAAAAATAAA
CAGTGATAAAAAGATAAGTCCTTGTCTTCCTTCTCACTTTCAGTTCTTGT
GGATCTTCTGAATACAAACTTAGGAGCTGTGACAAACTTGGAACAAGATT
TTGGAAACTCTATTAGCAATATCTAATAATTGTAAGTATCTTACCGGTTC
TGGACCACTGCTATCTTTAACTGAGTCTTTAGCTCTTTCAGATTTAGCTg
cttttgatttagattttGGTTTTCCATCCATCACCTAATAAATAATAGTT
TTCATGGTCATTACTTGTtcttacttgaaaaaaatatttattataagtac
ttattttggcaaaaactagttttcaagaattttctaatattttcaaaata
tcagctCTTACCAGAATATGACCTTTTTCACTTCCCAAAATTAAACATCA
TGATAACTTCTCAAAGTAACCCAAAATTATCTTTAAATtgttacaaattt
atttttcttctagACTTGGACCACTACACATGATGGGGAAATACTAAAGT
CAATTTTGAATATCTATTACAATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031210XLOC_031210Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049109-exon-scaffold_152-1491911889:53977..53990TCONS_00049109-exon-scaffold_152-1491911889:53977..53990Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1510915933:53977..53990TCONS_00049109-exon-scaffold_152-1510915933:53977..53990Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1575043694:53977..53990TCONS_00049109-exon-scaffold_152-1575043694:53977..53990Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1491911889:54070..54111TCONS_00049109-exon-scaffold_152-1491911889:54070..54111Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1510915933:54070..54111TCONS_00049109-exon-scaffold_152-1510915933:54070..54111Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1575043694:54070..54111TCONS_00049109-exon-scaffold_152-1575043694:54070..54111Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1491911889:56209..56296TCONS_00049109-exon-scaffold_152-1491911889:56209..56296Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1510915933:56209..56296TCONS_00049109-exon-scaffold_152-1510915933:56209..56296Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1575043694:56209..56296TCONS_00049109-exon-scaffold_152-1575043694:56209..56296Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1491911889:58520..58607TCONS_00049109-exon-scaffold_152-1491911889:58520..58607Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1510915933:58520..58607TCONS_00049109-exon-scaffold_152-1510915933:58520..58607Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1575043694:58520..58607TCONS_00049109-exon-scaffold_152-1575043694:58520..58607Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1491911889:58940..59002TCONS_00049109-exon-scaffold_152-1491911889:58940..59002Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1510915933:58940..59002TCONS_00049109-exon-scaffold_152-1510915933:58940..59002Clytia hemisphaericaexon
TCONS_00049109-exon-scaffold_152-1575043694:58940..59002TCONS_00049109-exon-scaffold_152-1575043694:58940..59002Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:53977..59002 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	2.28308	6.00059	0.794199	2.88692	1.70955	6.31964	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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