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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049121 ID=TCONS_00049121|Name=TCONS_00049121|organism=Clytia hemisphaerica|type=transcript|length=2467bpRun BLAST on NCBI protein sequence of TCONS_00049121-protein >TCONS_00049121-protein ID=TCONS_00049121-protein|Name=TCONS_00049121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp MKLITPEISWHQKEPIFSVDFCPETWKLASCGADFTIKVWQVKEKQDGDDRun BLAST on NCBI transcript from alignment at scaffold_152:81579..96875- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049121 ID=TCONS_00049121|Name=TCONS_00049121|organism=Clytia hemisphaerica|type=transcript|length=15297bp|location=Sequence derived from alignment at scaffold_152:81579..96875- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_152:81579..96875- >TCONS_00049121 ID=TCONS_00049121|Name=TCONS_00049121|organism=Clytia hemisphaerica|type=CDS|length=26586bp|location=Sequence derived from alignment at scaffold_152:81579..96875- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049121 vs. Swiss-Prot (Human)
Match: CAF1B (Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1) HSP 1 Score: 406.371 bits (1043), Expect = 4.876e-131 Identity = 194/401 (48.38%), Postives = 263/401 (65.59%), Query Frame = 3
Query: 72 MKLITPEISWHQKEPIFSVDF----CPETWKLASCGADFTIKVWQVKEKQDGDDSIGIEFLSNLDRHGKPVNVVRFSPNGKVLASAGDDGAIVLWKLNENKSNNMIDFSDDFGEDIVNKETWNVFKMLRGHVEDVYDLAWSPDSNQLITGSVDNSAIIWDANKGQSLKILTDHKHYVQGVCWDPRGFYIATHSSDRSCRLYGSTHHKCLHNIHRNTSSYMKDGQLTKSKFSKMFIDETMQSFFRRCTFSPDGSFLFLPAGLCEGEKKPKKTSYIFARGHYSRPVRQLPGTKKATVAIRCSPICYELMEDKEKNPELQENNDHFKIPYRMIYAVVSLDAVTLYDTQHSMPIGYCANMHYASLTDATWSSDGRLLVISSTDGYCSFIKFDEGELGTPITFDPI 1262
MK+IT EI+WH KEP++S+DF +LAS G D +++W+V++ DG + EFLSNL RH K VNVVRFSP G++LAS GDD I+LWK+N+NK I F D+ E +NKE W V K LRGH+EDVYD+ W+ D N + + SVDN+AIIWD +KGQ + I +HK YVQGV WDP G Y+AT S DR R+Y + N+ + S +G+ ++ +MF D++M+SFFRR +F+PDGS L PAG E + T+Y+F+R + RP+ LP KAT+A+RC P+ +EL E EL +PYR+++AV S D+V LYDTQ S P GY +N+HY +L+D +WSSDG L ISSTDGYCSF+ F++ ELG P+ P+
Sbjct: 1 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAIV--EFLSNLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDE-DEAQLNKENWTVVKTLRGHLEDVYDICWATDGNLMASASVDNTAIIWDVSKGQKISIFNEHKSYVQGVTWDPLGQYVATLSCDRVLRVYSIQKKRVAFNVSKMLSGIGAEGE---ARSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESGENVMNTTYVFSRKNLKRPIAHLPCPGKATLAVRCCPVYFELRPVVETGVEL------MSLPYRLVFAVASEDSVLLYDTQQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPV 389 The following BLAST results are available for this feature:
BLAST of TCONS_00049121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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