TCONS_00049133 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049133
Unique NameTCONS_00049133
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049133 ID=TCONS_00049133|Name=TCONS_00049133|organism=Clytia hemisphaerica|type=transcript|length=687bp
GTCCAACCTGGGGTACGCTAACCTTGTACATCGATGGGTGTGTGCCGCTA
GGCTCGAAAAGTTGATCCTAAAAGGTACAGAGTTTTTGCTGCTGCGGTGA
TGAACCATCGCCACATTCCTATTTCATCTTTTCGCCTGAGTACCGGAGGT
CCAAGTATCAAACCCAATAATGTAGAAACTATAACGGTATTGACGAAAAA
TCCCTCTATTATCATTCACCCATCGATTCATCCAGACAAAGAGAGAAAAC
ATTTCACCAAAAGAGCCAAACAAAATTTTATGATAACTCTAACATAATAT
CTACCGTAGCCTCTTAGACATATCaacaatttcaaaacaacaaaaagtga
CATTTTTCTCATTACTTTGCAACCTCTTTCATAACACCAGACGTGACGAA
AGAGGCGTACAACATTCCTTCTATAAAAAGTATCTCCGTCCGTACGTCCG
TCCGTCCGTACGCTTATTAATAAAAGGTTGTAAAGTTTGTTACATCTGTT
TCGCCATCAAAAGTGTTTATATCACACGTTTTTCTCAAGGCACTCTACTG
TATCAAAAGTATGACAAAACTTCCCCAATacgaaaaaaattataacttcc
ACTTTACTGAAATATTGGAAAAAGTGAAACAATCTACCCAATAGCAGCCT
CTCTTTCAACTGACGTCGAAGGTGATCAAAGAGTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_152:52754..53440

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049133 ID=TCONS_00049133|Name=TCONS_00049133|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_152:52754..53440 (Clytia hemisphaerica)
ATTACTCTTTGATCACCTTCGACGTCAGTTGAAAGAGAGGCTGCTATTGG
GTAGATTGTTTCACTTTTTCCAATATTTCAGTAAAGTggaagttataatt
tttttcgtATTGGGGAAGTTTTGTCATACTTTTGATACAGTAGAGTGCCT
TGAGAAAAACGTGTGATATAAACACTTTTGATGGCGAAACAGATGTAACA
AACTTTACAACCTTTTATTAATAAGCGTACGGACGGACGGACGTACGGAC
GGAGATACTTTTTATAGAAGGAATGTTGTACGCCTCTTTCGTCACGTCTG
GTGTTATGAAAGAGGTTGCAAAGTAATGAGAAAAATGtcactttttgttg
ttttgaaattgttGATATGTCTAAGAGGCTACGGTAGATATTATGTTAGA
GTTATCATAAAATTTTGTTTGGCTCTTTTGGTGAAATGTTTTCTCTCTTT
GTCTGGATGAATCGATGGGTGAATGATAATAGAGGGATTTTTCGTCAATA
CCGTTATAGTTTCTACATTATTGGGTTTGATACTTGGACCTCCGGTACTC
AGGCGAAAAGATGAAATAGGAATGTGGCGATGGTTCATCACCGCAGCAGC
AAAAACTCTGTACCTTTTAGGATCAACTTTTCGAGCCTAGCGGCACACAC
CCATCGATGTACAAGGTTAGCGTACCCCAGGTTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031223XLOC_031223Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049133-exon-scaffold_152-1491911889:52754..53440TCONS_00049133-exon-scaffold_152-1491911889:52754..53440Clytia hemisphaericaexon
TCONS_00049133-exon-scaffold_152-1510915933:52754..53440TCONS_00049133-exon-scaffold_152-1510915933:52754..53440Clytia hemisphaericaexon
TCONS_00049133-exon-scaffold_152-1575043694:52754..53440TCONS_00049133-exon-scaffold_152-1575043694:52754..53440Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:52754..53440 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0742212	0	0.588259	0.246651	0	0	0	0	0	0.154944	0.150392	0.247155	0.394898	0.461368	0.168581	0.0452283	0.947199	0.970848	1.02568	0.990743	0.430568	1.78513	0.255302	0.232106	0.557816	0.782316	0	0	0.247139	0.335728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049133 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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