TCONS_00049136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049136
Unique NameTCONS_00049136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049136 ID=TCONS_00049136|Name=TCONS_00049136|organism=Clytia hemisphaerica|type=transcript|length=611bp
tctCTATAAGCATAACTTAAATTGGCCATGGTTGAATTTAAGAGCTACGA
GATAGTAAAAGAATTGGCTAATTTAACACCCCGAGCCTTGGCAACCTGAT
ATACTTATTCAAGAAAAGTGTACACTACCATATTTATTTCTTTAACAGGG
ACGAAAGGTGAACTAATCGAATTTGATTTGGAACGGCAAAAGAAAAAAGC
TGAACAGACTAATGAggtataaaaatttatttctcgattttgtcttcctt
ctttaTTTGATCGGATCGGATTAAGTCTTTGCGATGCTTTTAGAATTAAA
ACGGCAACGGATTTAGAGAAGCGATTCACGTTTGCGTTCAATAGCGTCTG
CGATTATTCGATGGTTTTCGAGTTGAATCGTTTTCGATAACGAATTGAGA
GAAGCGATTCTTGTTTACGTTCAAGAGCGTCTGCGATTATTCGGTGGTTT
TCGAGTTAAATCGTTTTCGATAACAGATTGAGAAAAGTGATTCTTGTTTG
CGTTCAATAGCGTCTGCGATTATTCGATGGTTTTCGAGTTAAATCGTTTT
CGACAACAGATTGAGAGAAGCGATTCTTGCTTGCGTTCAATAGCGTCTGC
GATTGATTAGT
Run BLAST on NCBI

transcript from alignment at scaffold_152:135062..135672

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049136 ID=TCONS_00049136|Name=TCONS_00049136|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_152:135062..135672 (Clytia hemisphaerica)
ACTAATCAATCGCAGACGCTATTGAACGCAAGCAAGAATCGCTTCTCTCA
ATCTGTTGTCGAAAACGATTTAACTCGAAAACCATCGAATAATCGCAGAC
GCTATTGAACGCAAACAAGAATCACTTTTCTCAATCTGTTATCGAAAACG
ATTTAACTCGAAAACCACCGAATAATCGCAGACGCTCTTGAACGTAAACA
AGAATCGCTTCTCTCAATTCGTTATCGAAAACGATTCAACTCGAAAACCA
TCGAATAATCGCAGACGCTATTGAACGCAAACGTGAATCGCTTCTCTAAA
TCCGTTGCCGTTTTAATTCTAAAAGCATCGCAAAGACTTAATCCGATCCG
ATCAAAtaaagaaggaagacaaaatcgagaaataaatttttataccTCAT
TAGTCTGTTCAGCTTTTTTCTTTTGCCGTTCCAAATCAAATTCGATTAGT
TCACCTTTCGTCCCTGTTAAAGAAATAAATATGGTAGTGTACACTTTTCT
TGAATAAGTATATCAGGTTGCCAAGGCTCGGGGTGTTAAATTAGCCAATT
CTTTTACTATCTCGTAGCTCTTAAATTCAACCATGGCCAATTTAAGTTAT
GCTTATAGaga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031226XLOC_031226Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049136-exon-scaffold_152-1491911889:135062..135672TCONS_00049136-exon-scaffold_152-1491911889:135062..135672Clytia hemisphaericaexon
TCONS_00049136-exon-scaffold_152-1510915933:135062..135672TCONS_00049136-exon-scaffold_152-1510915933:135062..135672Clytia hemisphaericaexon
TCONS_00049136-exon-scaffold_152-1575043694:135062..135672TCONS_00049136-exon-scaffold_152-1575043694:135062..135672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:135062..135672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.06973	5.92494	4.53853	5.0987	3.42098	2.67143	3.30825	2.40982	2.40647	3.04773	0	0	0	0	0	0	0	0	0	0	1.04229	2.62152	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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