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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049139 ID=TCONS_00049139|Name=TCONS_00049139|organism=Clytia hemisphaerica|type=transcript|length=4645bpRun BLAST on NCBI protein sequence of TCONS_00049139-protein >TCONS_00049139-protein ID=TCONS_00049139-protein|Name=TCONS_00049139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1429bp RFKIVPTDEYITELNEEEDEEEDEDPDMIDIGKQFYLHKSIANQLYDYQKRun BLAST on NCBI transcript from alignment at scaffold_153:28858..44082+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049139 ID=TCONS_00049139|Name=TCONS_00049139|organism=Clytia hemisphaerica|type=transcript|length=15225bp|location=Sequence derived from alignment at scaffold_153:28858..44082+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_153:28858..44082+ >TCONS_00049139 ID=TCONS_00049139|Name=TCONS_00049139|organism=Clytia hemisphaerica|type=CDS|length=90090bp|location=Sequence derived from alignment at scaffold_153:28858..44082+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049139 vs. Swiss-Prot (Human)
Match: ERC6L (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1) HSP 1 Score: 603.594 bits (1555), Expect = 0.000e+0 Identity = 313/696 (44.97%), Postives = 454/696 (65.23%), Query Frame = 3
Query: 105 FYLHKSIANQLYDYQKEGVLWFWKLY-NRKQGGILGDDMGLGKTIQVISFMAGMFDAELIKNAIIVAPLSILVNWEKEFAKWAGGIRIKPFHGTAKKQRMKNLHKIQNNDGILITTYGMVVSNINSLCVDENGDPFEWDYLILDEGHKIK-NATKTSKCVRNIPSKYHYILTGTPVQNNLGEMWSLFDFTQQGQLLGTRKTFDTEFQKPIVRAREKDANEYQQQVGNKIAETLRKLIAPYFLRRTKAEVFNLNKLDDEPSTEANKENVDHTDGKKKKQPKAPELNTRKNDLIIWVYLSKLQLKLYQGFVNSERVKECLVTTRSPLAELNLLKKISDHPRLQST----LSKLMTSSAEQQTRRDCGLPXXXXXXXXXXXXXXXAVDGPPVEKLIQDSGKMVFLAQLMKNLKAEKHRTIIFSQSRKMLDIIQKTLLSMDHKLLRIDGTISNPLEREKIIQQFQSDRSFTAMLMTTQVGSVGLTLTSADRLIIFDPSWNPGTDAQAVDRVYRVGQKKDVVIYRLITCGSIEEKIYRKQIFKNAVMKQATGSSNNPYRYFTNHELRELFVLDDPTQSTTQQQLKELHQKPTNTQQGFQNHLQFLQELDCIYGVSHHDQLFS------QEARNTQTNEYEDAIKKQVNNAERRVREEFNDVDFSPRKYKPRSHDGEDTEYI----------KLGRPPPSPA 2126
L++ + NQL+++QKEG+ + + LY + ++GGIL DDMGLGKT+Q+I+F++GMFDA L+ + +++ P +++ W KEF KW G+R+K FHG +K +R +NL++IQ +G++ITTY M+++N L G F WDY+ILDE HKIK ++TK++ C R IP+ +LTGTP+QNNL E+WSLFDF QG LLGT KTF E++ PI RAREKDA ++ +G KI+E L +I PYFLRRTK +V K P N++N D D + P L +RKNDLIIW+ L LQ ++Y+ FV+ + +KE L+ TRSPLAEL +LKK+ DHPRL S L L T SA+ + S + + +D + L+++SGKM+FL L+K L+ E H+T++FSQSR++L+II++ L + K LRIDGT+++ LEREK I FQ ++ ++ L+TTQVG VGLTLT+A R++IFDPSWNP TDAQAVDRVYR+GQK++VV+YRLITCG++EEKIYR+Q+FK+++++Q TG NP+RYF+ ELRELF ++D S TQ QL+ LH + H+ +LQ L I G+S HD +++ +E + + Y I+++V A+ V E + +F + + R+ E + KL +P P P+
Sbjct: 86 LLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLINNWQQLS-SFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKEDV--QKKKSSNPEARLNEKNPD-VDAI----CEMPSL-SRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGE-------------DSPDVDHIDQVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTIEDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLG-IAGISDHDLMYTCDLSVKEELDVVEESHY---IQQRVQKAQFLVEFESQNKEFLMEQQRTRNEGAWLREPVFPSSTKKKCPKLNKPQPQPS 755 The following BLAST results are available for this feature:
BLAST of TCONS_00049139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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