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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049142 ID=TCONS_00049142|Name=TCONS_00049142|organism=Clytia hemisphaerica|type=transcript|length=5882bpRun BLAST on NCBI protein sequence of TCONS_00049142-protein >TCONS_00049142-protein ID=TCONS_00049142-protein|Name=TCONS_00049142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1530bp FQLNSANMAMQRGIPNQQPRFPGMMNQKLPGMQMPNQMQQHRPNMINRMNRun BLAST on NCBI transcript from alignment at scaffold_153:129457..138118+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049142 ID=TCONS_00049142|Name=TCONS_00049142|organism=Clytia hemisphaerica|type=transcript|length=8662bp|location=Sequence derived from alignment at scaffold_153:129457..138118+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_153:129457..138118+ >TCONS_00049142 ID=TCONS_00049142|Name=TCONS_00049142|organism=Clytia hemisphaerica|type=CDS|length=68895bp|location=Sequence derived from alignment at scaffold_153:129457..138118+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049142 vs. Swiss-Prot (Human)
Match: CBP (CREB-binding protein OS=Homo sapiens GN=CREBBP PE=1 SV=3) HSP 1 Score: 644.81 bits (1662), Expect = 0.000e+0 Identity = 288/478 (60.25%), Postives = 365/478 (76.36%), Query Frame = 2
Query: 764 KIWTKEELIESLMPVFDKVHKIDPESGPFLTPVNPDQLGIPDYFHIVKNPMDLSTIKSKLDNGDYKDPWGFCDDMRLMFENAWLYNKKTTKVYKYCSKLYDIFEADIDPVMKKLGYCCGSKHLFNPQVLYCLGQNGSCTIGRDKQYYSYQDRYHYCENCFNAFEGDSINFGEDTILEKTSNNSNVPKSDFKKKKNDHLDKEPFVECTECKRKMHQVCVLHLDFIWENGFVCDGCRESKSLGERKENRFNAKRLPQTKLGEHIEKRVNGYLKTAENSDTAGYVHIRVVSSQNKSVDVRPGMRDRYSKEG-FPESFPYRARALFAFEEIDGVDVCFFGMHTQEFGSDCPEPNRNRIYLSYLDSVHFFRPRHLKTNVYWEILIGYFEFCKKRGFHWAHIWSCPPSEGDDYIFHCHPPEQKIPKSKRLVEWYKRMLEKSEKDDVLVEYKDIYTQAINDLVKSPLNLPYFDGDYWPNQIEDSI 2194
KI+ EEL ++LMP + +++ DPES PF PV+P LGIPDYF IVKNPMDLSTIK KLD G Y++PW + DD+ LMF NAWLYN+KT++VYK+CSKL ++FE +IDPVM+ LGYCCG K+ F+PQ L C G+ CTI RD YYSYQ+RYH+CE CF +G+++ G+D +T+ + K F+KKKND LD EPFV+C EC RKMHQ+CVLH D IW +GFVCD C + K+ RKEN+F+AKRL T+LG H+E RVN +L+ +N AG V +RVV+S +K+V+V+PGM+ R+ G ESFPYR +ALFAFEEIDGVDVCFFGMH QE+GSDCP PN R+Y+SYLDS+HFFRPR L+T VY EILIGY E+ KK G+ HIW+CPPSEGDDYIFHCHPP+QKIPK KRL EWYK+ML+K+ + ++ +YKDI+ QA D + S LPYF+GD+WPN +E+SI
Sbjct: 1083 KIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQSLGYCCGRKYEFSPQTLCCYGKQ-LCTIPRDAAYYSYQNRYHFCEKCFTEIQGENVTLGDDPSQPQTT----ISKDQFEKKKNDTLDPEPFVDCKECGRKMHQICVLHYDIIWPSGFVCDNCLK-KTGRPRKENKFSAKRLQTTRLGNHLEDRVNKFLRR-QNHPEAGEVFVRVVASSDKTVEVKPGMKSRFVDSGEMSESFPYRTKALFAFEEIDGVDVCFFGMHVQEYGSDCPPPNTRRVYISYLDSIHFFRPRCLRTAVYHEILIGYLEYVKKLGYVTGHIWACPPSEGDDYIFHCHPPDQKIPKPKRLQEWYKKMLDKAFAERIIHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESI 1553 HSP 2 Score: 283.878 bits (725), Expect = 1.367e-76 Identity = 130/231 (56.28%), Postives = 164/231 (71.00%), Query Frame = 2
Query: 2414 SCEVSQRIFTIMEKYKESFFVIRFYK-PGEEPTDKIEDPDPLMQSDIMDGRDAFLTTSRDKHWEFASLRRAKFSSMAMLAELHNQGSDKFVYNCNVCKRQIITRLHCTVCEDFDLCTICYKDKGHEHKMEKLGLDIETEQPNSANKTSAINAQEARRKSIERCIESLDHATYCNAKTCNKQACLKMKKVVSHAKNCKRKTTQGCPICKQLIALCCYHAKSCTRSQCLVPYC 3103
S ++SQ+++ MEK+KE FFVI + P I DPDPL+ D+MDGRDAFLT +RDKHWEF+SLRR+K+S++ ML ELH QG D+FVY CN CK + TR HCTVCED+DLC CY K H HKM K GL ++ E +S + + + QE+RR SI+RCI+SL HA C C+ +C KMK+VV H K CKRKT GCP+CKQLIALCCYHAK C ++C VP+C
Sbjct: 1614 SNDLSQKLYATMEKHKEVFFVIHLHAGPVINTLPPIVDPDPLLSCDLMDGRDAFLTLARDKHWEFSSLRRSKWSTLCMLVELHTQGQDRFVYTCNECKHHVETRWHCTVCEDYDLCINCYNTKSHAHKMVKWGLGLDDEG-SSQGEPQSKSPQESRRLSIQRCIQSLVHACQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPVCKQLIALCCYHAKHCQENKCPVPFC 1843 The following BLAST results are available for this feature:
BLAST of TCONS_00049142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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