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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049186 ID=TCONS_00049186|Name=TCONS_00049186|organism=Clytia hemisphaerica|type=transcript|length=1690bp
aaaataaaatggctACTAGTGATTATAAATATACAAAGATCTCCGAGTTG
AAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCAAATATTACAG
AGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATGCTTACATTGG
TCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAGATGTAATTTG
TTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGATTGGAGACAT
TGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGAAGGTTACAAT
TGCAAGCTAATAAACGAGCTTATGCATGACAGAAGAACAGTAGAAGCCCT
CTGTGAATTCTACAAAACAAATGTTACATCAGTCGACGAAGATGCAACTA
ACCTGACAATGTTCAAAGATTTTACTATGAACAGCTACGTTAATTGCATG
GCAAAAGTGATTGGGATTTACAGATTCGAAACAAATTATTGTCTATTGAA
AGTATCGGATGGAAGTAAAGTCAGTTTTTCATCGTTTAGACAAAGTGGCA
AAATCGATAATACATGTCTTATGCACTGGGTTGACCAAGACGCTGCAGAA
GCCACCAGAAACCATTCCTTTGATATTTCAGTTTTTGACGACCATGTAAA
GATTCTGGACGATTTAAAAGTGGGTgattatgttttattttgtaatctac
acatcaAAAGAGTGACCTACAGCACCTATACTTCTGGAATGATACACACA
TTCAATCTGAAAGAGgTGCAAGACAGTAAAGGTTGGGCGGAAGTTATTCT
TCATTCTGGGCGCTCCTACGGGCGTGGAATTTCCATTGTTGAGGCAGATC
GTACTGGTGTTGCAGACATCAAGGGGCGGGTACAAGCTTTAATGGACAAT
TATCAAGCCAATAAAGCAAGAGAACACGTACCGAGACCTTTACAAGACTC
TTTAACAACCACTGACTACCCAGCACAACCCTTTCGTGCAATACAGACAA
TTCAAAATACAGCCGTACCAAATAAATTTCGTTTACGAGGGAAATTAATC
GGTATAAAACCACGCTCGATCGAAGACTTTGTTATGAAAATGTGTAATGG
GTGTGATACAATATATTCACGTAGTACCTCCAATAAGTGTTGTCCGAGCT
GCCCGGAAAAAGAACTAGAGCATAAGATATATTTTCAATTACTGGTCGAA
GATCACACAGGACTTTTAAAAGCTGACGTCTACGATAAAGAGGCAGAATA
TTTCTTGAACTCGATGACCCCACACATTTTATTGACTGACTCAGCGAGAC
GTGAAAACGTAGagttgaaaatgaagactttgTTAGACGACTCGATCAAT
CCAAGAgtgaaaatgaatttgaaacACTTCCCTTGGATCGAGTTGTGTTT
GTATTCGTTCAAAGATGCGTTTAATGGAACTGTTTATCGTGTTTTTGGAA
CAAGTCTAATTTGACCTACTTGTTCTAACTGTACTTTTTATGAACTTCTT
GATAACATTCCGCAAACTTCTGAAAGAACCATTCTTCTGCAATACATTCG
TGCAAGTCTTCTCAGGAAATTAAAACAATTGAGTGTAAAGCACCAAaggg
ggacaagctggagtttttacaagctctcgtttgatttggttggtcgttaa
cctgtaataaaacaattttgttactttttctaaagaacgc Run BLAST on NCBI transcript from alignment at scaffold_153:15837..18658- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049186 ID=TCONS_00049186|Name=TCONS_00049186|organism=Clytia hemisphaerica|type=transcript|length=2822bp|location=Sequence derived from alignment at scaffold_153:15837..18658- (Clytia hemisphaerica)
AAAATAAAATGGCTACTAGTGATTATAAATATACAAAGATCTCCGAGTTG
AAAGAAGGTGATCGAGATGTCAACATTTATGGTATTGTCAAATATTACAG
AGAACCCATCCGCACCAGTACTGGTCAATATAACTCCATGCTTACATTGG
TCGATGAATCTGTGCAAGACGATCTGGAGAAAGGCATCAGATGTAATTTG
TTTGGTAACAGTGTTGATGAACTACCACAAATCAACAAGATTGGAGACAT
TGTACGAATTCACAGAGCCTTCATCAAATTCTTTAATGGAAGGTTACAAT
TGCAAGCTAATAAACGAGCTTATGCATGGTAAGATTCTCCTTCAATCTCC
TTCTTCAAAACTCACTGATCTTCTAGCCAAGAATATTTTTCATTGTTTTG
CTGATAGTAGAACTACGGCCAACATAGTCAGATAGAATATGAATTTAGGG
ATCACCAAAGAGTTTAAGGAAAGTTCCTCATGTGGTATATTTGTAAGAAA
GAAATGATAAATAGGATGATAAACGGGCACTAGATTTTTCATTTTTTTGA
AATTTCTATGCATAGAATATCGAGAAAAATACCCGCAAAAAATGTCCATT
TTTAGCTCCAGTATGCTGCTACCATGGCTCCAGACCTTTTAAAAGGCTAA
AATGAACAACGTGGAAGTGGTGAAACTCTAAACATCCATAACAATATCCA
CCTATTGATTTTAGGATCGTGGTGTCAATGGATGATGTGNTCTAAACATC
CATAACAATATCCACCTTTTGATTTTAGGATCGTGGTGTCAATGGATGAT
GTGGAGAATGTCAAATCATCTCATGAGAATTTCACTTTCACCATTATAGA
CAGAAGAACAGTAGAAGCCCTCTGTGAATTCTACAAAACAAATGTTACAT
CAGTCGACGAAGATGCAACTAACCTGACAATGTTCAAAGATTTTACTATG
AACAGCTACGTTAATTGCATGGCAAAAGTGATTGGGATTTACAGATTCGA
AACAAATTATTGTCTATTGAAAGTATCGGATGGAAGTAAAGTCAGTTTTT
CATCGTTTAGACAAAGTGGCAAAATCGATAATACATGTCTTATGCACTGG
GTTGACCAAGACGCTGCAGAAGCCACCAGAAACCATTCCTTTGATATTTC
AGTTTTTGACGACCATGTAAAGATTCTGGACGATTTAAAAGTGGGTGATT
ATGTTTTATTTTGTAATCTACACATCAAAAGAGTGACCTACAGCACCTAT
ACTTCTGGAATGATACACACATTCAATCTGAAAGAGGTATGAGAATTCAT
TTAACAGAACTCGTGTTTTTACAAATGTTTCTTGGTAGTAAATTAGTCGT
CTAAATGGGCCCCTAAATGAAAAAAAGTAAAGCTCGAAAGAAAAAAAATC
AATCACTCATTTTTGGGAGGTCAGTTTTCTAAATTATAACGACTATAAGC
TTATCCTTTGAAAAGCCTGGTTTAATTTTCCACCTTTTAAGATTTTGGAG
AAACCATGTAACGTTTTCGACAAGACGATATTTATTAGCGGTTTTTCGGG
GGTTAAAAGTTCTATTTTAGGACCCATTTCGAGTCAATTTGAAAAGACAT
TATGAAAAATAGCCGAAAGTTTTCAAAATAGCCTTTCTCGGCAAAAAAAG
TGAAGGGAAGCAAAATAAATGCAACGAGCTGAAGAAAAAAGGCGCTCGGA
ATAATTGTCGAGTCCCCCTCCTCTACGGCACGTTCATCTCAATGTCCATC
TATAGCTAAATCTACTTTAATTTTTAGTTGTATATTTAAACAGTGTTATA
ACAGACTTGTTTGCAAGTTTGATCCAATCGGTCAATCTTGCCTGAAATCT
TAATACTGCAATCCCGAAAATGTCTTACTTTTTTTTTCATTCTTTAGGTG
CAAGACAGTAAAGGTTGGGCGGAAGTTATTCTTCATTCTGGGCGCTCCTA
CGGGCGTGGAATTTCCATTGTTGAGGCAGATCGTACTGGTGTTGCAGACA
TCAAGGGGCGGGTACAAGCTTTAATGGACAATTATCAAGCCAATAAAGCA
AGAGAACACGTACCGAGACCTTTACAAGACTCTTTAACAACCACTGACTA
CCCAGCACAACCCTTTCGTGCAATACAGACAATTCAAAATACAGCCGTAC
CAAATAAATTTCGTTTACGAGGGAAATTAATCGGTATAAAACCACGCTCG
ATCGAAGACTTTGTTATGAAAATGTGTAATGGGTGTGATACAATATATTC
ACGTAGTACCTCCAATAAGTGTTGTCCGAGCTGCCCGGAAAAAGAACTAG
AGCATAAGATATATTTTCAATTACTGGTCGAAGATCACACAGGACTTTTA
AAAGCTGACGTCTACGATAAAGAGGCAGAATATTTCTTGAACTCGATGAC
CCCACACATTTTATTGACTGACTCAGCGAGACGTGAAAACGTAGAGTTGA
AAATGAAGACTTTGTTAGACGACTCGATCAATCCAAGAGTGAAAATGAAT
TTGAAACACTTCCCTTGGATCGAGTTGTGTTTGTATTCGTTCAAAGATGC
GTTTAATGGAACTGTTTATCGTGTTTTTGGAACAAGTCTAATTTGACCTA
CTTGTTCTAACTGTACTTTTTATGAACTTCTTGATAACATTCCGCAAACT
TCTGAAAGAACCATTCTTCTGCAATACATTCGTGCAAGTCTTCTCAGGAA
ATTAAAACAATTGAGTGTAAAGCACCAAAGGGGGACAAGCTGGAGTTTTT
ACAAGCTCTCGTTTGATTTGGTTGGTCGTTAACCTGTAATAAAACAATTT
TGTTACTTTTTCTAAAGAACGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049186-exon-scaffold_153-1575043694:18331..18658 | TCONS_00049186-exon-scaffold_153-1575043694:18331..18658 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1575043694:17373..17809 | TCONS_00049186-exon-scaffold_153-1575043694:17373..17809 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1575043694:15837..16761 | TCONS_00049186-exon-scaffold_153-1575043694:15837..16761 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1510915933:18331..18658 | TCONS_00049186-exon-scaffold_153-1510915933:18331..18658 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1510915933:17373..17809 | TCONS_00049186-exon-scaffold_153-1510915933:17373..17809 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1510915933:15837..16761 | TCONS_00049186-exon-scaffold_153-1510915933:15837..16761 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1491911889:18331..18658 | TCONS_00049186-exon-scaffold_153-1491911889:18331..18658 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1491911889:17373..17809 | TCONS_00049186-exon-scaffold_153-1491911889:17373..17809 | Clytia hemisphaerica | exon |
| TCONS_00049186-exon-scaffold_153-1491911889:15837..16761 | TCONS_00049186-exon-scaffold_153-1491911889:15837..16761 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:15837..18658 - |
Blast
BLAST of TCONS_00049186 vs. Swiss-Prot (Human)
Match: POTE1 (Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 1.193e-23 Identity = 73/288 (25.35%), Postives = 115/288 (39.93%), Query Frame = 1
Query: 304 KLINELMHDRRTVEALCEFYKTNVTSVDEDATNLTMFKDFTMNSYVNCMAKVIGIYRFETNYCLLKVSDGSKVSFSSFRQSGKIDNTCLMHWVDQDAAEATRNHSFDISVFDDHVKILDDLKVGDYVLFCNLHIKRVTYSTYTSGMIHTFNLKEVQDSKGWAEVILHSGRSYGRGISIVEADRTGVADIKGRVQALMDNYQANKARE--------------------HVPRPLQDSLTT-TDYPAQPFRAIQTIQNTAVPNKFRLRGKLIGIKPRSIEDFVMKMCNGC 1104
K N D + VEAL + T+++ + L D Y + +++G + LLKV DG++ F S+R I + L D +N + DI V+D+HV + LKVG ++ +LH K + ++ M+ E LH G SYGRGI ++ + V +K +++ N AN+ + V R Q S T TD+ + I P ++R+R KL KPR + V C C
Sbjct: 121 KYFNFTTEDHKMVEALRVWASTHMSP----SWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFLLKVWDGTRTPFPSWRV--LIQDLVLEG--DLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLRIYSLHTKLQSMNSENQTMLS-------------LEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESA--NLTANQHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQYRIRAKLRSYKPRRLFQSVKLHCPKC 385 HSP 2 Score: 62.3882 bits (150), Expect = 1.193e-23 Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 3
Query: 9 MATSDYKYTKISELKEGDRDVNIYGIVKYYREPIRTSTGQYNSMLTLVDESVQDDLEKGIRCNLFGNSVDELPQINKIGDIVRIHRAFIKFFNGRLQ 299
+ ++Y YT +++LK G VN+YG+VK+++ P + Y S++T+VD++ + C LF + + LP I K GDIVR HR I+ + Q
Sbjct: 4 VPATNYIYTPLNQLK-GGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQT-----NVKLTCLLFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQ 94
The following BLAST results are available for this feature:
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