TCONS_00049193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049193
Unique NameTCONS_00049193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length257

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049193 ID=TCONS_00049193|Name=TCONS_00049193|organism=Clytia hemisphaerica|type=transcript|length=257bp
GTACAATttctaccccctggaaatcCCCCACTGTTTATTAGGAGGCAACT
GACTGTTTCTTTAGGGGAGTATCCATCTTCTGATATTTGTAAACACTTCT
TANCTCttgcagaaaaaaagaagaaaacGCCCTGGCGTATTGCTATACAT
GTCGAGCACAAAGCTGATCAATCAGATAAAGAGAACATCAACAGATCCAC
TAAAGGAACAAAGAAAACATTCAATGAAAAAGTTGCTCAACGACCACAAA
GGGTAAG
Run BLAST on NCBI

transcript from alignment at scaffold_153:67689..68327-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049193 ID=TCONS_00049193|Name=TCONS_00049193|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at scaffold_153:67689..68327- (Clytia hemisphaerica)
GTACAATTTCTACCCCCTGGAAATCCCCCACTGTTTATTAGGAGGCAACT
GACTGTTTCTTTAGGGGAGTATCCATCTTCTGATATTTGTAAACACTTCT
TANCTCTTGCAGAAAAAAAGAAGAAAAGTAACAGTGGTTTTATTTTGTTA
TTTGTGTTTATATTTTTTTACACTACCACAATAATAATATTGCTTTGTCT
TTGTCCCTATTTTCATCTCTCGAATAAAATCTATTTCCCTTTGTTAGATT
TTATTTTTTTGTTTGTGTTTCCTTTAAAAGTTGAAAAATTAAAAAAAGTA
AATGAAACCAGTATTACAAATGGCAAGTTCTGGAAATGCTGCCAGAAAAG
AACTAGCATCAATTTGTAGGTATGCAGTGGTATACAACGAAGTTTAGTAT
CGTGAAAGTATTACTCACCTTTCATGGTATTATCCTTATCAAAAGCAATC
TTGTCAAAGTTATCACCTGGTTAATCTAATTCTCATTGCGTTTTCATTTT
CATTTTAAGCGCCCTGGCGTATTGCTATACATGTCGAGCACAAAGCTGAT
CAATCAGATAAAGAGAACATCAACAGATCCACTAAAGGAACAAAGAAAAC
ATTCAATGAAAAAGTTGCTCAACGACCACAAAGGGTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031236XLOC_031236Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049193-exon-scaffold_153-1575043694:68201..68327TCONS_00049193-exon-scaffold_153-1575043694:68201..68327Clytia hemisphaericaexon
TCONS_00049193-exon-scaffold_153-1575043694:67689..67818TCONS_00049193-exon-scaffold_153-1575043694:67689..67818Clytia hemisphaericaexon
TCONS_00049193-exon-scaffold_153-1510915933:68201..68327TCONS_00049193-exon-scaffold_153-1510915933:68201..68327Clytia hemisphaericaexon
TCONS_00049193-exon-scaffold_153-1510915933:67689..67818TCONS_00049193-exon-scaffold_153-1510915933:67689..67818Clytia hemisphaericaexon
TCONS_00049193-exon-scaffold_153-1491911889:68201..68327TCONS_00049193-exon-scaffold_153-1491911889:68201..68327Clytia hemisphaericaexon
TCONS_00049193-exon-scaffold_153-1491911889:67689..67818TCONS_00049193-exon-scaffold_153-1491911889:67689..67818Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:67689..68327 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
61.8533	56.9658	21.7882	18.2712	259.506	212.389	89.2416	81.0653	27.7987	30.129	11.8369	10.5273	8.96836	9.01885	13.2684	18.427	36.6305	24.325	3.65286	5.35143	9.30273	14.585	36.2479	26.507	99.6137	66.5125	4.71184	4.02288	16.7817	29.5327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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