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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049195 ID=TCONS_00049195|Name=TCONS_00049195|organism=Clytia hemisphaerica|type=transcript|length=2765bp
ATCAAAATTATATGTGATATCTTACCGTTATGTTTATGCGTATATCGTCG
TAGTATGCGATAGGACTTGCGACATTCCATTACATACCATAATATTATAC
AGTTCAACGCGACTGTAGTTTATTAGGAGAAATCACTGTAATATTTTTAT
TGGACTCGCTCATACAAAGATCGGTTTATTATTTTGATGGTTAAGACTTA
ATAAAATCGAGACAAAGAAGTGCGGTTACGCCCGAGAATACACCTAACGC
CACAAACGCCCAATTGTTCGGCAATATCAAGAGTTCGGTAAAATACCTGA
AcgtaatcaaaacattcgatttcaaAAAcatgagaaaagaaaataagttt
ttGTCAAAGCTGAAGCCGTTGTTTTTGAACTGCAATTGACTTTCAAAGGT
CATTTTACATAGAGAAGCATGCTTGTATAACACATAATTATAATGCATCA
AAAAATGGGAAGACCTGAAAGCAGCAAAACTCATAGTAAAAATGGAAGAA
GCACTTATAGACGATCACTTCTTGGAAGTAGCACACTCGCAATTTTTTTA
CAACCAACTTTTTTGGCAAGAAATttatcttcatcttcttctccCAAAAC
ACCTGATGAAGAAAAGGAGAACAAAGAAGTTTCAGCAGAGAAGATATTCA
GCCTTCTAAAAGATGCTAATAAAATTATGGTCAAAGGTGccaaacttttt
gaaagtttaaacgAACTGAAGCTCTGTGGTTGGATAAACCCTTACACATT
GTTGTTAAGTGGAGTTTCTGAAGATATGAAACTTGTGAAACGCGCTTGGA
TCAAGAGACATTTGAAAAACCCTGAAAACtacttcatcaaagatattgGA
ATTATTCGTGATTGCGTCGTCGAGATGATCCCTCAATCGCCCTTCATGTC
GTTAACCACCGCCTTGTTCGAAGCCGTCGCCGATCTCAACCATCAAAACA
TATTTCCAACCAAAGACATCCTTCACGAATATCTACGTAAACATTACCCT
GAGATTAAGACTCCCGATACGAAGATCATACATGAATGCTTAGGGAGACT
GATCAAGAATCGAAGGTTATATCATAACGGGCGTGGTTACTTTATCTTGT
TTAATGAGAATGTTCTCAATGAAGTTATCTCATTGAAATCAAGTTTAAAA
CCTTTAACAAACGACACCACAAGCCTTGAACCTTCCATTATCGGGTTTAA
AATGATGGACTCGCGTACTTCAAGCTCTGGACAAACTGACGGCCATACTG
ACCTTCCAACTGATTTAGATCATCGCTCACAAGGAGGAGACGTTTATCAA
AACATTCAACGACATCAAAGTGTTGATACTTTGACAGAAGTCACAGCACT
AGCTGATGGCGTGGCTAATATATCTGAATTATACACGCCCAAATTACACA
GGACCTCATTTGGAGGGAAATTGTTTCGCAAAAACAACAATAAAGCAGAA
AAAGGAGCGATCGAAAAAACACATAAAAACCACGCGAAGATGTTTTCGTG
TAGCACTGCAACTGATAGTATTATTCTCTCTAATGATCTAATCAATACGC
CCTCGCGTGTTCCCATTGTTCAGGGAACAGAAACAATGACCATTCAAAAC
AAAGACGTTCTTGACAGTGCAACCATGAGCGACGTCACAGACGTTCAGAG
TCCGTCAATGTCTGGTCGTCGTCGCAAAGTCAAACGAAGCAAAAGTTTCG
GTGGCAAAAATCGTCGTGAACCACGAACTTCCTCAAATAAGGAGGTTTCG
TTTGCGTTGATCGGCTCACCGAGAGATAGCAACGGTTCAAACGACGACGA
ATATCCAAAACGTTTTCAAAGAAGCCACTCTTTCGGTGTGGGTTACCATA
GAGATAAATACCAACGACCCTCGTTTTCTGAACGGCCCACTATCGCACGT
GcagaaaatattaaactttCAACGACTTCGAATAATACATGTAGTTCCAA
TGAAAATACTTTCGACCACACTTTCGTGACGGAACTAGATGAGACGTACG
ACGACATAGAACCGTCTTTTGTTGACGATAATATACCGGTGTTCGATGAT
GGACCCGAACTCTCTCATAGACCGGATATGTTGCCCGTTGTTGATACATC
GACTTTCGAAACGTTAGAGAATTATAAAGACCTTGGAAGTGCGTTGAGTT
TACCACGCATAAATGATAAAGGGATCAATTTTAACATGGTAGATTTGCTA
TCACCGACAAAGGAGGAATGTTTAGCGGAAGAATTGAAACAAGCTGGAGA
GGTGGATATAGATTCTTTGGAAAAAGAGACGAGACTTTTGAGTCCTCGAT
CACGCAAGAAACACGGAACGCCTTACGAAAGTCAGTACATTACAGAAGCT
GTCGATCAAAGTGAAGAGATATGTCAAGCTCTTGAGGACAGCAAAAGGGA
TAAGAATTCGAACTACCTTTCTGATAGAAGTTCAACAACACCGACAGGTA
GCAAAAGCAGTAAATCTACCAAAGGTGTCAAAATGAGGAATCGATCCAAA
TCAAGCGAAGATGAACGTAAACGAAATCAAAAGGAGCGAAATTCGTTATT
ATTTGAAGAGAAACGACCCTCACTCAAAGTGATGGGGATGGTATAATTTA
TTCTAATTTATGACaaaacaatttatttattttctggGATAACTATAATT
TTAGCAGGCAATttagttttgtatatatttaaaGCGAAAAATTAGAAGTT
AAATCTAATCTTCACATTAAGGAATTCATCACTTTATTCTCCATGGTTTT
GGTGGAATACCTGAA Run BLAST on NCBI protein sequence of TCONS_00049195-protein >TCONS_00049195-protein ID=TCONS_00049195-protein|Name=TCONS_00049195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp
MHQKMGRPESSKTHSKNGRSTYRRSLLGSSTLAIFLQPTFLARNLSSSSS
PKTPDEEKENKEVSAEKIFSLLKDANKIMVKGAKLFESLNELKLCGWINP
YTLLLSGVSEDMKLVKRAWIKRHLKNPENYFIKDIGIIRDCVVEMIPQSP
FMSLTTALFEAVADLNHQNIFPTKDILHEYLRKHYPEIKTPDTKIIHECL
GRLIKNRRLYHNGRGYFILFNENVLNEVISLKSSLKPLTNDTTSLEPSII
GFKMMDSRTSSSGQTDGHTDLPTDLDHRSQGGDVYQNIQRHQSVDTLTEV
TALADGVANISELYTPKLHRTSFGGKLFRKNNNKAEKGAIEKTHKNHAKM
FSCSTATDSIILSNDLINTPSRVPIVQGTETMTIQNKDVLDSATMSDVTD
VQSPSMSGRRRKVKRSKSFGGKNRREPRTSSNKEVSFALIGSPRDSNGSN
DDEYPKRFQRSHSFGVGYHRDKYQRPSFSERPTIARAENIKLSTTSNNTC
SSNENTFDHTFVTELDETYDDIEPSFVDDNIPVFDDGPELSHRPDMLPVV
DTSTFETLENYKDLGSALSLPRINDKGINFNMVDLLSPTKEECLAEELKQ
AGEVDIDSLEKETRLLSPRSRKKHGTPYESQYITEAVDQSEEICQALEDS
KRDKNSNYLSDRSSTTPTGSKSSKSTKGVKMRNRSKSSEDERKRNQKERN
SLLFEEKRPSLKVMGMV Run BLAST on NCBI transcript from alignment at scaffold_153:168171..174553- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049195 ID=TCONS_00049195|Name=TCONS_00049195|organism=Clytia hemisphaerica|type=transcript|length=6383bp|location=Sequence derived from alignment at scaffold_153:168171..174553- (Clytia hemisphaerica)
ATCAAAATTATATGTGATATCTTACCGTTATGTTTATGCGTATATCGTCG
TAGTATGCGATAGGACTTGCGACATTCCATTACATACCATAATATTATAC
AGTTCAACGCGACTGTAGTTTATTAGGAGAAATCACTGTAATATTTTTAT
TGGACTCGCTCATACAAAGATCGGTTTATTATTTTGATGGTTAAGACTTA
ATAAAATCGAGACAAAGAAGTGCGGTTACGCCCGAGAATACACCTAACGC
CACAAACGCCCAATTGTTCGGCAATATCAAGAGTTCGGTAAAATACCTGA
ACGTAATCAAAACATTCGATTTCAAAAACATGAGAAAAGAAAATAAGTTT
TTGTCAAAGCTGAAGCCGTTGTTTTTGAACTGCAATTGACTTTCAAAGGT
CATTTTACATAGAGAAGCATGCTTGTATAACACATAATTATAATGCATCA
AAAAATGGGAAGACCTGAAAGCAGCAAAACTCATAGTAAAAATGGAAGAA
GCACTTATAGACGATCACTTCTTGGAAGTAGCACACTCGCAATTTTTTTA
CAACCAACTTTTTTGGCAAGAAATTTATCTTCATCTTCTTCTCCCAAAAC
ACCTGATGAAGAAAAGGAGAACAAAGAAGTTTCAGCAGAGAAGATATTCA
GCCTTCTAAAAGATGCTAATAAAATTATGGTCAAAGGTGCCAAACTTTTT
GAAAGTTTAAACGAACTGAAGCTCTGTGGTTGGATAAACCCTTACACATT
GTTGTTAAGTGGAGTTTCTGAAGATATGAAACTTGTGAAACGCGCTTGGA
TCAAGAGACATTTGAAAAACCCTGAAAACTACTTCATCAAAGATATTGGT
AAGAAATACAAAAGTGTCTGTGTTTAAATTAAACATATTCTAAACGTTTA
GAATAATGATATGATAATTTTTACAACATGTTCTTAGATTTAGTGGTTGT
TGTGCAGTGATGGATTTTTCTCTTCCTCTAAATTTCTCTATTTGAGTGTC
AAAAGTACTTTAAAGAACAGATCAGGCTTCAAGAAACAGGGCAGAGTAGA
AAAGGAGCAATTAGAGATAGAGATTTTAAGCTATCATACAGTTTTTTACT
GTTACTTATAGGAGAGTGGGAAAATATCAATTTTCTTTTGAAATTACACA
TGCTACTATCAGATAAAAACTATTCTTAGACAGTATATCTTATTAAAAGA
TTTTAGTAAGTCCTAATTTTCAAATAATTTGCAGAGATATGAAATTTGTA
ATTTAGTTAAAGTGGGTAGGAGATTAGAATTATTGCAATAAGGTGAGGAT
TATAATTAATGTAATGGTATCTTGCTGATTAACGTCCCATTACTTTCTTT
TGATTCTTTAGGTATATCGAGATATTTGATAACATATAAGCTTTAAACTT
CACTGTGTGACATGGTTCTTGATAAATATTTTAAGTAACTTTTTCATCAA
CTTTTACTGTAGAATAGAGTACCAATGATACAAGCTTTAAGTCAAATAAT
TAGTTTTCTGGGTGAACTTTGTTACAATAGACATATAAGTGTCATTCTTA
TAAGTTAAGCACTTTTCTGTGGTTTTTTCTTGAGGGAAGTGATTGATGCC
TACGTTTCCTTTGGCAAATCTGTATTAAATAACAAACTCCCTATAATGAG
AAAGGAAGGAATGCTATTTTTGTTTTATTTACACAACGGTTTCCTTTCAT
AAACAAACTTTAAAAATCTCAGATGCTTTAAAGGATGTAGATATGGAAAC
ATCAAAACAATGTATTTAAAACACAAGGTATACCACAGCATTTCTTATGT
TTAAATACATTTTTCCATGCACAGCATTGATATATGTATTCTAGTTGGAT
TGAAATATGAGGAATGAAATTATCAACAGACAGAAAAGGGCTATCAATTT
CACAGAGTTTGTCAAAAATCAATTCATATTTCAAATTCACACATCTCTGA
AAATGATCAGGCTTTTCATTGACTCATGAAATTTTAATGTTAAAAGGATT
GCATGGAAATGACAAATATTATAATAAGCTTGGCTCCTCCAGATGTCTCA
GGGAATTATGAAAAAATATTTCATCCATAAAACAAATAAATTCTTTGATT
TTTTATTTGAATTTTAGATAACTTCCTTCCCTATTTTACATTTTACCAAA
AAAAAAAGGTAAATAAAAGAGTTTAGAGAAAGGGAAATTTACTCTCCCCT
GCTGATCCTTTCTGAGATTCCCAGTTAGTTTCAGGAGATCTATCTTTATT
TCTTTTGAAATGAACACTCTACAAAATGCACAAATTTTTATCTGTACATA
CAATGTCAAGTTTGTCTCCACCGTAACTCAATCTTTTAATCTCACGTCTA
GTATCATAAACTAAAAACCTACAAATAGTTTATTTGTGGATGAAAAAAAA
ACCTCGAGTGCAATTAAAAAAGTATCTAGAATTCTTTAATATGAGAATTT
GGTTTGGAATAATATCACATTGGCTTTTCAGAATTTGGAATTTAAATCTT
GGTGAATAAATCAAGCGATCTCAGTTTATATAACGGGTTGGCTAATGCTT
TAAAAGTCAACATGATGAAAATATCTCACATCTTATAATCACTCAGGAAA
CATCAAATTCGACACTACGTTACATTTTCTCACTTTGTCTTTATTGTCGA
GATCGATTTTTTCTTTCTCTTGTATCTCCTCCCTTTCTTTCAGTTTTGAA
GTTGAAAAATATAAGATGATTCTTTTCATACTATTTTGTGCTATTTTTAA
GAAGCCGAGAGTAAAAAATCGCTAGCGAGAGAAAGTCGTCTATCCGTTTA
GACATTTTTTAAAATACTATGACAAATTTTGATCTTATCAGGAAATTAAT
TCGAAGCTATCTGTCCTGATGATCGTGACTTTCATCTTAATCCTACTTGA
CCTTTTCTTACGTAAGGGATTTACATTTGGAATTTCAAAAAATTCTTCTC
GGTAGACAGACAAATGAAATCAGGGAAAAACATGTTTACTTTTCCCTGGG
CAAGCAAAAAATGAACCGAACTCTGGTTCACAGAATTTTTCTCAAATCCC
GTTCCAAAAAACATTTGATATTTCGGGGAATTTCGCAATCAAATGCTGCA
CTACTTGCAAACTTTGCAGTATTACTTTTTGCAGAGGAAACTATGTATAA
TCTTTTTAACTGTATTGAAAATATGTGTGCTGATTTAGGATGCCAACTAG
GTTAGATTTTCTGATTGCTAAATGCATCGAGTTCAGTTGTTTAACTGGTC
TTTCCATTCCGGTAGTGGAATAATCTTGGGTACTTGACAAAAACTGGAGT
CTACTGTAAGAATTTCTCTAGAATGGAATAGTTTAAGCTTAGCCTAGCCA
AAATATTGTGGTCAATGGAGAATGTCAGCGTCTAGAATGAACGGAGTCCA
GTTGATTAGTTTTAATTACACCCAGTATCTATTATTTCCTTTGATAATTA
CGGCTCTGCGGTAGATGACAACATAATGCATTGCTTCTTGCCGGCATTTT
ATATTTTGTTCAATGGAATTTTTCTTGCTTTTGACTGATTAGTTGTACTC
TGTTTATATGAATGAACTAGTAATTACATTTCAATTATGATATTTCTCCC
TTACAATAATTTTGAGTTGTTCTTAAGTATACCGATAAATTTTCTTTTTG
CTACTTTACTCAGATTAATTATGGAGATTTCATATCAGAAGCCAAAAGTT
TTTTCGGATATTTTCACAAATTAGTGTTGTTTTTTTATTTCGCGTAGATT
TAATTTTTTGAACCAGCAAAAAAAATTTATCATATAGTATTGGCCCTGGC
CCAGTTTATTTTATTTACGTTGAAAATCCGATTTTGGATATTTCATGTGG
ATTTGATTTCGCGAGTCAGCGCTTTCACGAGATTTGTTCTGTTCGTGAAA
GCGTGCGAAATTAAATATGATTGAAGTGGACTTTTTCCTTGGACTTTTTC
CTTGGACTTTATATAAACCGAAACTGTAAATCCTTCAATAGCTTTAACAT
CCCTGTCTGATTGATCGGTTTGATAAATTTTCCAGTAGTGGTGATTCTAT
ATTTTACAGTGATGGTATAGAATTCAACAGCGTTTATTTTATGGTGATTT
CGCGATCGTTGGTCACCAGCCCTCTTCCGAATGTAATTGATTTGCTTTAA
CGCGGTGGGAAGCGCGCTAATGTTAAATTTATTTTAATGAAAGCGGTCTT
TTGTATAAGAAGTTTGTTTTCGTTCCGCTAAGAGGGTAATTTTTGAACCA
AGGAGACGACTGGATTAACATCTATAAGACACTATCAAATATTTGTTTAT
TTCATAATGAGGTGAAAAAAACTCAAAAAGTGATACTTATTATGTAGAGA
CAATTTGATTTTGATGTCAAAACAATGTTTTAAAAACGCAGGGGAAAATG
TTTTCTATCATAAAAAATTAGCTGAAGAAAAAACGGTACAGTTCATTTTT
CGTTGTTCAATTTTAGGAATTATTCGTGATTGCGTCGTCGAGATGATCCC
TCAATCGCCCTTCATGTCGTTAACCACCGCCTTGTTCGAAGCCGTCGCCG
ATCTCAACCATCAAAACATATTTCCAACCAAAGACATCCTTCACGAATAT
CTACGTAAACATTACCCTGAGATTAAGACTCCCGATACGAAGATCATACA
TGAATGCTTAGGGAGACTGATCAAGAATCGAAGGTTATATCATAACGGGC
GTGGTTACTTTATCTTGTTTAATGAGAATGTTCTCAATGAAGTTATCTCA
TTGAAATCAAGTTTAAAACCTTTAACAAACGACACCACAAGCCTTGAACC
TTCCATTATCGGGTTTAAAATGATGGACTCGCGTACTTCAAGCTCTGGAC
AAACTGACGGCCATACTGACCTTCCAACTGATTTAGATCATCGCTCACAA
GGAGGAGACGTTTATCAAAACATTCAACGACATCAAAGTGTTGATACTTT
GACAGAAGTCACAGCACTAGCTGATGGCGTGGCTAATATATCTGAATTAT
ACACGCCCAAATTACACAGGACCTCATTTGGAGGGAAATTGTTTCGCAAA
AACAACAATAAAGCAGAAAAAGGAGCGATCGAAAAAACACATAAAAACCA
CGCGAAGATGTTTTCGTGTAGCACTGCAACTGATAGTATTATTCTCTCTA
ATGATCTAATCAATACGCCCTCGCGTGTTCCCATTGTTCAGGGAACAGAA
ACAATGACCATTCAAAACAAAGACGTTCTTGACAGTGCAACCATGAGCGA
CGTCACAGACGTTCAGAGTCCGTCAATGTCTGGTCGTCGTCGCAAAGTCA
AACGAAGCAAAAGTTTCGGTGGCAAAAATCGTCGTGAACCACGAACTTCC
TCAAATAAGGAGGTTTCGTTTGCGTTGATCGGCTCACCGAGAGATAGCAA
CGGTTCAAACGACGACGAATATCCAAAACGTTTTCAAAGAAGCCACTCTT
TCGGTGTGGGTTACCATAGAGATAAATACCAACGACCCTCGTTTTCTGAA
CGGCCCACTATCGCACGTGCAGAAAATATTAAACTTTCAACGACTTCGAA
TAATACATGTAGTTCCAATGAAAATACTTTCGACCACACTTTCGTGACGG
AACTAGATGAGACGTACGACGACATAGAACCGTCTTTTGTTGACGATAAT
ATACCGGTGTTCGATGATGGACCCGAACTCTCTCATAGACCGGATATGTT
GCCCGTTGTTGATACATCGACTTTCGAAACGTTAGAGAATTATAAAGACC
TTGGAAGTGCGTTGAGTTTACCACGCATAAATGATAAAGGGATCAATTTT
AACATGGTAGATTTGCTATCACCGACAAAGGAGGAATGTTTAGCGGAAGA
ATTGAAACAAGCTGGAGAGGTGGATATAGATTCTTTGGAAAAAGAGACGA
GACTTTTGAGTCCTCGATCACGCAAGAAACACGGAACGCCTTACGAAAGT
CAGTACATTACAGAAGCTGTCGATCAAAGTGAAGAGATATGTCAAGCTCT
TGAGGACAGCAAAAGGGATAAGAATTCGAACTACCTTTCTGATAGAAGTT
CAACAACACCGACAGGTAGCAAAAGCAGTAAATCTACCAAAGGTGTCAAA
ATGAGGAATCGATCCAAATCAAGCGAAGATGAACGTAAACGAAATCAAAA
GGAGCGAAATTCGTTATTATTTGAAGAGAAACGACCCTCACTCAAAGTGA
TGGGGATGGTATAATTTATTCTAATTTATGACAAAACAATTTATTTATTT
TCTGGGATAACTATAATTTTAGCAGGCAATTTAGTTTTGTATATATTTAA
AGCGAAAAATTAGAAGTTAAATCTAATCTTCACATTAAGGAATTCATCAC
TTTATTCTCCATGGTTTTGGTGGAATACCTGAA Coding sequence (CDS) from alignment at scaffold_153:168171..174553- >TCONS_00049195 ID=TCONS_00049195|Name=TCONS_00049195|organism=Clytia hemisphaerica|type=CDS|length=4308bp|location=Sequence derived from alignment at scaffold_153:168171..174553- (Clytia hemisphaerica)
GAATTATTCGTGATTGCGTCGTCGAGATGATCCCTCAATCGCCCTTCATG
TCGTTAACCACCGCCTTGTTCGAAGCCGTCGCCGATCTCAACCATCAAAA
CATATTTCCAACCAAAGACATCCTTCACGAATATCTACGTAAACATTACC
CTGAGATTAAGACTCCCGATACGAAGATCATACATGAATGCTTAGGGAGA
CTGATCAAGAATCGAAGGTTATATCATAACGGGCGTGGTTACTTTATCTT
GTTTAATGAGAATGTTCTCAATGAAGTTATCTCATTGAAATCAAGTTTAA
AACCTTTAACAAACGACACCACAAGCCTTGAACCTTCCATTATCGGGTTT
AAAATGATGGACTCGCGTACTTCAAGCTCTGGACAAACTGACGGCCATAC
TGACCTTCCAACTGATTTAGATCATCGCTCACAAGGAGGAGACGTTTATC
AAAACATTCAACGACATCAAAGTGTTGATACTTTGACAGAAGTCACAGCA
CTAGCTGATGGCGTGGCTAATATATCTGAATTATACACGCCCAAATTACA
CAGGACCTCATTTGGAGGGAAATTGTTTCGCAAAAACAACAATAAAGCAG
AAAAAGGAGCGATCGAAAAAACACATAAAAACCACGCGAAGATGTTTTCG
TGTAGCACTGCAACTGATAGTATTATTCTCTCTAATGATCTAATCAATAC
GCCCTCGCGTGTTCCCATTGTTCAGGGAACAGAAACAATGACCATTCAAA
ACAAAGACGTTCTTGACAGTGCAACCATGAGCGACGTCACAGACGTTCAG
AGTCCGTCAATGTCTGGTCGTCGTCGCAAAGTCAAACGAAGCAAAAGTTT
CGGTGGCAAAAATCGTCGTGAACCACGAACTTCCTCAAATAAGGAGGTTT
CGTTTGCGTTGATCGGCTCACCGAGAGATAGCAACGGTTCAAACGACGAC
GAATATCCAAAACGTTTTCAAAGAAGCCACTCTTTCGGTGTGGGTTACCA
TAGAGATAAATACCAACGACCCTCGTTTTCTGAACGGCCCACTATCGCAC
GTGCAGAAAATATTAAACTTTCAACGACTTCGAATAATACATGTAGTTCC
AATGAAAATACTTTCGACCACACTTTCGTGACGGAACTAGATGAGACGTA
CGACGACATAGAACCGTCTTTTGTTGACGATAATATACCGGTGTTCGATG
ATGGACCCGAACTCTCTCATAGACCGGATATGTTGCCCGTTGTTGATACA
TCGACTTTCGAAACGTTAGAGAATTATAAAGACCTTGGAAGTGCGTTGAG
TTTACCACGCATAAATGATAAAGGGATCAATTTTAACATGGTAGATTTGC
TATCACCGACAAAGGAGGAATGTTTAGCGGAAGAATTGAAACAAGCTGGA
GAGGTGGATATAGATTCTTTGGAAAAAGAGACGAGACTTTTGAGTCCTCG
ATCACGCAAGAAACACGGAACGCCTTACGAAAGTCAGTACATTACAGAAG
CTGTCGATCAAAGTGAAGAGATATGTCAAGCTCTTGAGGACAGCAAAAGG
GATAAGAATTCGAACTACCTTTCTGATAGAAGTTCAACAACACCGACAGG
TAGCAAAAGCAGTAAATCTACCAAAGGTGTCAAAATGAGGAATCGATCCA
AATCAAGCGAAGATGAACGTAAACGAAATCAAAAGGAGCGAAATTCGTTA
TTATTTGAAGAGAAACGACCCTCACTCAAAGTGATGGGGATGGTATAAAT
GCATCAAAAAATGGGAAGACCTGAAAGCAGCAAAACTCATAGTAAAAATG
GAAGAAGCACTTATAGACGATCACTTCTTGGAAGTAGCACACTCGCAATT
TTTTTACAACCAACTTTTTTGGCAAGAAATTTATCTTCATCTTCTTCTCC
CAAAACACCTGATGAAGAAAAGGAGAACAAAGAAGTTTCAGCAGAGAAGA
TATTCAGCCTTCTAAAAGATGCTAATAAAATTATGGTCAAAGGTGCCAAA
CTTTTTGAAAGTTTAAACGAACTGAAGCTCTGTGGTTGGATAAACCCTTA
CACATTGTTGTTAAGTGGAGTTTCTGAAGATATGAAACTTGTGAAACGCG
CTTGGATCAAGAGACATTTGAAAAACCCTGAAAACTACTTCATCAAAGAT
ATTGGAATTATTCGTGATTGCGTCGTCGAGATGATCCCTCAATCGCCCTT
CATGTCGTTAACCACCGCCTTGTTCGAAGCCGTCGCCGATCTCAACCATC
AAAACATATTTCCAACCAAAGACATCCTTCACGAATATCTACGTAAACAT
TACCCTGAGATTAAGACTCCCGATACGAAGATCATACATGAATGCTTAGG
GAGACTGATCAAGAATCGAAGGTTATATCATAACGGGCGTGGTTACTTTA
TCTTGTTTAATGAGAATGTTCTCAATGAAGTTATCTCATTGAAATCAAGT
TTAAAACCTTTAACAAACGACACCACAAGCCTTGAACCTTCCATTATCGG
GTTTAAAATGATGGACTCGCGTACTTCAAGCTCTGGACAAACTGACGGCC
ATACTGACCTTCCAACTGATTTAGATCATCGCTCACAAGGAGGAGACGTT
TATCAAAACATTCAACGACATCAAAGTGTTGATACTTTGACAGAAGTCAC
AGCACTAGCTGATGGCGTGGCTAATATATCTGAATTATACACGCCCAAAT
TACACAGGACCTCATTTGGAGGGAAATTGTTTCGCAAAAACAACAATAAA
GCAGAAAAAGGAGCGATCGAAAAAACACATAAAAACCACGCGAAGATGTT
TTCGTGTAGCACTGCAACTGATAGTATTATTCTCTCTAATGATCTAATCA
ATACGCCCTCGCGTGTTCCCATTGTTCAGGGAACAGAAACAATGACCATT
CAAAACAAAGACGTTCTTGACAGTGCAACCATGAGCGACGTCACAGACGT
TCAGAGTCCGTCAATGTCTGGTCGTCGTCGCAAAGTCAAACGAAGCAAAA
GTTTCGGTGGCAAAAATCGTCGTGAACCACGAACTTCCTCAAATAAGGAG
GTTTCGTTTGCGTTGATCGGCTCACCGAGAGATAGCAACGGTTCAAACGA
CGACGAATATCCAAAACGTTTTCAAAGAAGCCACTCTTTCGGTGTGGGTT
ACCATAGAGATAAATACCAACGACCCTCGTTTTCTGAACGGCCCACTATC
GCACGTGCAGAAAATATTAAACTTTCAACGACTTCGAATAATACATGTAG
TTCCAATGAAAATACTTTCGACCACACTTTCGTGACGGAACTAGATGAGA
CGTACGACGACATAGAACCGTCTTTTGTTGACGATAATATACCGGTGTTC
GATGATGGACCCGAACTCTCTCATAGACCGGATATGTTGCCCGTTGTTGA
TACATCGACTTTCGAAACGTTAGAGAATTATAAAGACCTTGGAAGTGCGT
TGAGTTTACCACGCATAAATGATAAAGGGATCAATTTTAACATGGTAGAT
TTGCTATCACCGACAAAGGAGGAATGTTTAGCGGAAGAATTGAAACAAGC
TGGAGAGGTGGATATAGATTCTTTGGAAAAAGAGACGAGACTTTTGAGTC
CTCGATCACGCAAGAAACACGGAACGCCTTACGAAAGTCAGTACATTACA
GAAGCTGTCGATCAAAGTGAAGAGATATGTCAAGCTCTTGAGGACAGCAA
AAGGGATAAGAATTCGAACTACCTTTCTGATAGAAGTTCAACAACACCGA
CAGGTAGCAAAAGCAGTAAATCTACCAAAGGTGTCAAAATGAGGAATCGA
TCCAAATCAAGCGAAGATGAACGTAAACGAAATCAAAAGGAGCGAAATTC
GTTATTATTTGAAGAGAAACGACCCTCACTCAAAGTGATGGGGATGGTAT
AAATGCATCAAAAAATGGGAAGACCTGAAAGCAGCAAAACTCATAGTAAA
AATGGAAGAAGCACTTATAGACGATCACTTCTTGGAAGTAGCACACTCGC
AATTTTTTTACAACCAACTTTTTTGGCAAGAAATTTATCTTCATCTTCTT
CTCCCAAAACACCTGATGAAGAAAAGGAGAACAAAGAAGTTTCAGCAGAG
AAGATATTCAGCCTTCTAAAAGATGCTAATAAAATTATGGTCAAAGGTGC
CAAACTTTTTGAAAGTTTAAACGAACTGAAGCTCTGTGGTTGGATAAACC
CTTACACATTGTTGTTAAGTGGAGTTTCTGAAGATATGAAACTTGTGAAA
CGCGCTTGGATCAAGAGACATTTGAAAAACCCTGAAAACTACTTCATCAA
AGATATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049195-exon-scaffold_153-1575043694:173706..174553 | TCONS_00049195-exon-scaffold_153-1575043694:173706..174553 | Clytia hemisphaerica | exon |
| TCONS_00049195-exon-scaffold_153-1575043694:168171..170087 | TCONS_00049195-exon-scaffold_153-1575043694:168171..170087 | Clytia hemisphaerica | exon |
| TCONS_00049195-exon-scaffold_153-1510915933:173706..174553 | TCONS_00049195-exon-scaffold_153-1510915933:173706..174553 | Clytia hemisphaerica | exon |
| TCONS_00049195-exon-scaffold_153-1510915933:168171..170087 | TCONS_00049195-exon-scaffold_153-1510915933:168171..170087 | Clytia hemisphaerica | exon |
| TCONS_00049195-exon-scaffold_153-1491911889:173706..174553 | TCONS_00049195-exon-scaffold_153-1491911889:173706..174553 | Clytia hemisphaerica | exon |
| TCONS_00049195-exon-scaffold_153-1491911889:168171..170087 | TCONS_00049195-exon-scaffold_153-1491911889:168171..170087 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:168171..174553 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019391 | Storkhead-box_winged-helix |
Blast
BLAST of TCONS_00049195 vs. Swiss-Prot (Human)
Match: STOX1 (Storkhead-box protein 1 OS=Homo sapiens GN=STOX1 PE=1 SV=2) HSP 1 Score: 107.071 bits (266), Expect = 1.890e-23 Identity = 58/207 (28.02%), Postives = 102/207 (49.28%), Query Frame = 2
Query: 623 KEVSAEKIFSLLKDANKIMVKGAKLFESLNELKLCGWINPYTLLLSGVSEDMKLVKRAWIKRHLKNPENYFIKDIGIIRDCVVEMIPQSPFMSLTTALFEAVADLNHQNIFPTKDILHEYLRKHYPEIKTPDTKIIHECLGRLIKNRRLYHNGRGYFILFNENVLNEVISLKSSLKPLTNDTTSLEPSIIGFKMMDSRTSSSGQTDG 1243
+E +F + AN A+L + + L GW+ LL+ +++++ AW +R L+ P + I+ +G + + I QS F+ L L A++D+N I T++ L E L KHYP I P I++ LG LIK R++YH G GYFI+ + + + + + L +D + L P+ + + + + S Q +
Sbjct: 29 EEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGVLLVRAPPACLQVLRDAWRRRALRPPRGFRIRAVGDVFPVQMNPITQSQFVPLGEVLCCAISDMNTAQIVVTQESLLERLMKHYPGIAIPSEDILYTTLGTLIKERKIYHTGEGYFIVTPQTYFITNTTTQENKRMLPSDESRLMPASMTYLVSMESCAESAQENA 235
The following BLAST results are available for this feature:
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