TCONS_00049196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049196
Unique NameTCONS_00049196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length767

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049196 ID=TCONS_00049196|Name=TCONS_00049196|organism=Clytia hemisphaerica|type=transcript|length=767bp
TCGGGTGATCCATCATTAATCATGTTTTAATCAATTAAGCTGTTGTAAAT
TCACTCTTCATTTTGTATATTAGTGTGATATTTAGTTTGATTGATGAGAA
GCAAATTACGTAGCTATTTACGATacaaatatttgttttgaatatttttg
agtGGCATTTATATGACGACTTAATTGACATCATCCGGTGTAAATGCATT
GAGATTTGTGATTTCTGAAAACATCTCAAAGGCAATAATATTGGTCGGGT
ATCAGTGTTTCGTAAATATTGTGGGTGTTGAAATTAGCGAAAAAGGGGGT
TAGGTCTAGTAAATATTTTATGACATCGATAACAATGCGAAAAGGCCTAT
GAAACTCAAGCAACAGAAAAAATCAAGGTCAAGCGGTGAAAAAATACGAT
AAATGGTCAATCGACTGTTCAGTAATATTCTCATCTTGAAGGCGGcgtat
tttttgactttttcttttcacaGTGGGATTTTTATAAAGGATGAAATTTT
CTATAATGTGGTGGTGTTATAAAAAATATCTGAGTGTGATCTTCCTCGCT
GAATGATATATTATGATTTGACGGGTTAGTTACGCGAGAACTATGTTTTT
CATACGTCATTTTGCGGTAAGACTTTGATTGAAACCGCATTAACAACTCG
TCATAGAAACGGTATCAGAAAAAATGGTTTCATGGGAGATAACGATCAAT
GTTTACGTCTGAGAAAAGACAGCTGTATTCTTTCATGTGTGATCATTTTg
ccgaaatttcttttttc
Run BLAST on NCBI

transcript from alignment at scaffold_153:462..1228

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049196 ID=TCONS_00049196|Name=TCONS_00049196|organism=Clytia hemisphaerica|type=transcript|length=767bp|location=Sequence derived from alignment at scaffold_153:462..1228 (Clytia hemisphaerica)
gaaaaaagaaatttcggcAAAATGATCACACATGAAAGAATACAGCTGTC
TTTTCTCAGACGTAAACATTGATCGTTATCTCCCATGAAACCATTTTTTC
TGATACCGTTTCTATGACGAGTTGTTAATGCGGTTTCAATCAAAGTCTTA
CCGCAAAATGACGTATGAAAAACATAGTTCTCGCGTAACTAACCCGTCAA
ATCATAATATATCATTCAGCGAGGAAGATCACACTCAGATATTTTTTATA
ACACCACCACATTATAGAAAATTTCATCCTTTATAAAAATCCCACtgtga
aaagaaaaagtcaaaaaatacgCCGCCTTCAAGATGAGAATATTACTGAA
CAGTCGATTGACCATTTATCGTATTTTTTCACCGCTTGACCTTGATTTTT
TCTGTTGCTTGAGTTTCATAGGCCTTTTCGCATTGTTATCGATGTCATAA
AATATTTACTAGACCTAACCCCCTTTTTCGCTAATTTCAACACCCACAAT
ATTTACGAAACACTGATACCCGACCAATATTATTGCCTTTGAGATGTTTT
CAGAAATCACAAATCTCAATGCATTTACACCGGATGATGTCAATTAAGTC
GTCATATAAATGCCactcaaaaatattcaaaacaaatatttgtATCGTAA
ATAGCTACGTAATTTGCTTCTCATCAATCAAACTAAATATCACACTAATA
TACAAAATGAAGAGTGAATTTACAACAGCTTAATTGATTAAAACATGATT
AATGATGGATCACCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031239XLOC_031239Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049196-exon-scaffold_153-1491911889:462..1228TCONS_00049196-exon-scaffold_153-1491911889:462..1228Clytia hemisphaericaexon
TCONS_00049196-exon-scaffold_153-1510915933:462..1228TCONS_00049196-exon-scaffold_153-1510915933:462..1228Clytia hemisphaericaexon
TCONS_00049196-exon-scaffold_153-1575043694:462..1228TCONS_00049196-exon-scaffold_153-1575043694:462..1228Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:462..1228 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.572222	0.558006	0.935854	0.563438	0.60019	0.406524	0.735681	0.994841	0.0535778	0.398189	0.0644152	0.21172	0.295996	0.0878272	0.324926	0.271208	0.715941	0.146763	0.47311	0.14145	0.307365	0.089953	0	0.132553	0.136526	0.792003	1.22053	1.20955	0.635121	0.934683
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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