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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049202 ID=TCONS_00049202|Name=TCONS_00049202|organism=Clytia hemisphaerica|type=transcript|length=876bp
AGCCTAAAGCTGAAGAAGTGAGAGTTGAAGGAGTAGACGATGGTTGCGTG
GAAATTTGGTCAGTACTACTAGTTGGAAGACACGAGCTCATTACTTGATC
TTCCACTTTGACAGGGTTAGAGAGACTTGTCGGTAAGTTTTGAGAAGGTA
AATTGTTCATAGAGTTTGGTTGTTGATTCATTTGAAAGTTGTTCACAGGC
TGTTGGTTTGGTTGTGATTGAAATTGGTTATTCTGATTTTGAGacagttg
ttgttgttgctgctgAGGCAaattttggttttgattttgttgttgcaATT
GCTGGTTCATCTGCATGGTTTGACCAGAATTTGCAAACATTGCAGGGTTG
TTCATTCTATTGATCATATTTGGTCGATGTTGTTGCATTTGATTTGGCAT
TTGCATGCCAGGTAGTTTTTGATTCANCGCAGGAACAAATTCAGGGGGGT
CAGGATCCTGATACCAAACCCAGGGCCGGGgggtggtgtcaatttttttt
tcaaattttaaaaagtcaagttggtatcgataccaaaatgatgGGGTGGG
Gtcccctttttttgaaaattagggaatctttaagttggtatcgataccaa
aatgagagGTTGGGTCcgcctttttttaatttttgctgaatttgaaattg
gtatctgacttaaaatgttgtataatgtaagtataaaaacttatttgaat
cgtttacactataccctgattcttatttaacttttgctactctcaatcct
ttcaatcaaccaaaattcattcaaaactagagttgaacaaactgaatcaa
gtcttagcagatgataaaatttttctgtaTAAAACGTTCATCATACAGGC
TATGTTACAAAGACTCAAGGCGTGCC Run BLAST on NCBI protein sequence of TCONS_00049202-protein >TCONS_00049202-protein ID=TCONS_00049202-protein|Name=TCONS_00049202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MQMPNQMQQHRPNMINRMNNPAMFANSGQTMQMNQQLQQQNQNQNLPQQQ
QQQLSQNQNNQFQSQPNQQPVNNFQMNQQPNSMNNLPSQNLPTSLSNPVK
VEDQVMSSCLPTSSTDQISTQPSSTPSTLTSSALG Run BLAST on NCBI transcript from alignment at scaffold_153:128373..129248 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049202 ID=TCONS_00049202|Name=TCONS_00049202|organism=Clytia hemisphaerica|type=transcript|length=876bp|location=Sequence derived from alignment at scaffold_153:128373..129248 (Clytia hemisphaerica)
GGCACGCCTTGAGTCTTTGTAACATAGCCTGTATGATGAACGTTTTAtac
agaaaaattttatcatctgctaagacttgattcagtttgttcaactctag
ttttgaatgaattttggttgattgaaaggattgagagtagcaaaagttaa
ataagaatcagggtatagtgtaaacgattcaaataagtttttatacttac
attatacaacattttaagtcagataccaatttcaaattcagcaaaaatta
aaaaaaggcgGACCCAACctctcattttggtatcgataccaacttaaaga
ttccctaattttcaaaaaaaggggaCCCCACCCcatcattttggtatcga
taccaacttgactttttaaaatttgaaaaaaaaattgacaccacccCCCG
GCCCTGGGTTTGGTATCAGGATCCTGACCCCCCTGAATTTGTTCCTGCGN
TGAATCAAAAACTACCTGGCATGCAAATGCCAAATCAAATGCAACAACAT
CGACCAAATATGATCAATAGAATGAACAACCCTGCAATGTTTGCAAATTC
TGGTCAAACCATGCAGATGAACCAGCAATtgcaacaacaaaatcaaaacc
aaaattTGCCTcagcagcaacaacaacaactgtCTCAAAATCAGAATAAC
CAATTTCAATCACAACCAAACCAACAGCCTGTGAACAACTTTCAAATGAA
TCAACAACCAAACTCTATGAACAATTTACCTTCTCAAAACTTACCGACAA
GTCTCTCTAACCCTGTCAAAGTGGAAGATCAAGTAATGAGCTCGTGTCTT
CCAACTAGTAGTACTGACCAAATTTCCACGCAACCATCGTCTACTCCTTC
AACTCTCACTTCTTCAGCTTTAGGCT Coding sequence (CDS) from alignment at scaffold_153:128373..129248 >TCONS_00049202 ID=TCONS_00049202|Name=TCONS_00049202|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_153:128373..129248 (Clytia hemisphaerica)
ATGCAAATGCCAAATCAAATGCAACAACATCGACCAAATATGATCAATAG
AATGAACAACCCTGCAATGTTTGCAAATTCTGGTCAAACCATGCAGATGA
ACCAGCAATtgcaacaacaaaatcaaaaccaaaattTGCCTcagcagcaa
caacaacaactgtCTCAAAATCAGAATAACCAATTTCAATCACAACCAAA
CCAACAGCCTGTGAACAACTTTCAAATGAATCAACAACCAAACTCTATGA
ACAATTTACCTTCTCAAAACTTACCGACAAGTCTCTCTAACCCTGTCAAA
GTGGAAGATCAAGTAATGAGCTCGTGTCTTCCAACTAGTAGTACTGACCA
AATTTCCACGCAACCATCGTCTACTCCTTCAACTCTCACTTCTTCAGCTT
TAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049202-exon-scaffold_153-1491911889:128373..129248 | TCONS_00049202-exon-scaffold_153-1491911889:128373..129248 | Clytia hemisphaerica | exon |
| TCONS_00049202-exon-scaffold_153-1510915933:128373..129248 | TCONS_00049202-exon-scaffold_153-1510915933:128373..129248 | Clytia hemisphaerica | exon |
| TCONS_00049202-exon-scaffold_153-1575043694:128373..129248 | TCONS_00049202-exon-scaffold_153-1575043694:128373..129248 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_153 | supercontig | scaffold_153:128373..129248 . |
Blast
The following BLAST results are available for this feature:
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