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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049219 ID=TCONS_00049219|Name=TCONS_00049219|organism=Clytia hemisphaerica|type=transcript|length=561bp
ttattaggtatgaaaaaatattcaaatcataatgaaaaattatttatatt
AATAGCAGTATTACATTTAATTTCACTCATCTATAGCTCGAGTGATGTAT
CATGCCCAgttaaatttcaaataaactgCTGTTTGTTTACACGTACGAGT
AAATTAGGGATCCAACATCATTTAAAAACAGATTGCCGGCACTATGAACC
ATTTGTGAGTGGATCAGCGACAGTCATTTCAACCGAGAATGAATATGATC
TAGAATATTATAAGATTAAAACTCATAAATCTAAACATTTGATGCGACTG
AGATGGGTGCGTTTTAAATTATCAGGATCAACGCCGAAATGTTTTCAAGA
TTCAGTTTATATACAAATTGGGTGTTTTTGGTCGAAGATATATGGACCAT
TTTGTGGGAACACTTTACCTCATGATATTTACGCTCCAGATGGTTGTATC
ATACTTATTGTCCGCAATGGTAAAACATATAACAGCCAGATTAGATTCAT
TTCTGATGACATCAGCTtttcagatatggggaaaaacaAATCACCTTATT
GTAGATATAGG Run BLAST on NCBI protein sequence of TCONS_00049219-protein >TCONS_00049219-protein ID=TCONS_00049219-protein|Name=TCONS_00049219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
LLGMKKYSNHNEKLFILIAVLHLISLIYSSSDVSCPVKFQINCCLFTRTS
KLGIQHHLKTDCRHYEPFVSGSATVISTENEYDLEYYKIKTHKSKHLMRL
RWVRFKLSGSTPKCFQDSVYIQIGCFWSKIYGPFCGNTLPHDIYAPDGCI
ILIVRNGKTYNSQIRFISDDISFSDMGKNKSPYCRYR Run BLAST on NCBI transcript from alignment at scaffold_154:310459..312836+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049219 ID=TCONS_00049219|Name=TCONS_00049219|organism=Clytia hemisphaerica|type=transcript|length=2378bp|location=Sequence derived from alignment at scaffold_154:310459..312836+ (Clytia hemisphaerica)
ttattaggtatgaaaaaatattcaaatcataatgaaaaattatttatatt
AATAGCAGTATTACATTTAATTTCACTCATCTATAGCTCGAGTGATGTAT
CATGCCCAgttaaatttcaaataaactgCTGTTTGTTTACACGTACGAGT
AAATTAGGGATCCAACATCATTTAAAAACAGATTGCCGGCACTATGAACC
ATTTGTGAGTGGATCAGCGACAGTCATTTCAACCGAGAATGAATATGATC
TAGAATATTATAAGATTAAAACTCATAAATCTAAACATTTGATGCGACTG
AGATGGGTGCGTTTTAAATTATCAGGATCAACGCCGAAATGTTTTCAAGA
TTCAGTTTATATACAAATTGGGTAAGTGTAGTTTATATACAATGTAGTAT
AAGCCCCAAGGGCTAGAATTGAATcaccttggtaggatttgaaggcaaca
aaatcctaccaaagttgatTGGCCTTGAGCGGTCCACCTGGTTTTTACAc
gaatgacagattgaaactagaATTTAgggctaaatttcaaaaaaaatatt
actcgaaaacaaaaaaattactagattcaatccgtcgtcaaaaatacgcg
GTGCATATttcaaggcttcactttttcttgcctgagaaaagtTAGAGATT
CGCGTCTAGCCCtccgggcttatacttcattgtttATATAGCAAGCAACA
TCTTACTCAGAAGCTCTTTTAATTTATATCATCTAGAATTTGAATGAATA
TCATCAAAAATACCCGGAAACCTGACCGAATCGAGCCACAACCTTGAGAC
CAGATTTGTGTAGTCCACGAAATAACGTCAATTTTCTTGAGTTACGCTTG
GAAATCGACTAtatatccacttaaaagtcCTTTATATCGTTTTTCCAGAG
CTTTCGATTGGTATAAGTGGTTTTGGGTTttattgactttgaaatttcgt
caaattttAGGGGTTAAGGGGTTTTGTGTGTGACGTCAGTTTTTGGGTCC
TAAAAGATttttctacaatcatggttaaaatctaccttatcggccaaacc
ttaattttagtcacctcgtcaaaatttagtcactaagggccgactaatta
ttaagaccgactaaaatttttggccatttttaaatttacaagcagatgga
aaataggagaaagcttaaaatactgaaaaataaggaaaacttaattataa
acttttatttttggcccaaatttttagtcggcccaaattttagttggccc
aaatttttagtcggccctaattttagtcaccaagccagaatttagtcact
tagggccgactaagttttggccgatagggtattgagaatttagcttattt
cctcgtttttcgaaacttggagttcgggcgagaaagtcgattttgggcca
tctcttaaatttaatcgTATTTTTCAATTTGGCACGGGCTTATATACTTC
TAGGCTATAATCGGAGctttattggaccattttcgaacttttggattctc
agatcctaaggtcctaatgcttaagtctagcgttaaaactctacccatcc
aacctaacttagagcacttcaaaatcatttgtggctttaaaaattctttg
gaatttcccctttttttttaaatattacgaccatgattgtaagtCTTAGC
AGAAAACCCACTActctttaaatacttcattctttAAAATTTAACAGAAT
TGATTGCGTTGCATAAAAGATGTAACGGGTCCTAAAGGTTTGCTCCCTAC
TAAAAGCCGTAGTGATGATACCTCAATGTCTATGTGAAATATAATGTGAT
CCAACAACAAACCTATCTTTGCTCTCTTACGCCAGATTAATTTTCCTTAG
GCATGtgcataggcggttttagaccatgtcgaacATATCAGAGGAGGAGA
TTTGTAATtgtgatttcattgttttttaataacaagcgttgcactccttc
gcatgtttccgacgtacttgttCTATTGGCTTAAATCCGCCAGTGTTGAT
GGGGGATGGACGACAGACGAATGTTGGCAGGGCAAGCCTTTAAGGGGCCA
AATGTCCTGTCACGAACATCTAGAAagatgtttatttttttctaccGATC
CATTTTAGAAGCTATTTATATAATCTTTAAATGGCTTATTAGATAGGAGC
AAATCAAGTTGTATTGATTTTATCATTATCATTGACAGGTGTTTTTGGTC
GAAGATATATGGACCATTTTGTGGGAACACTTTACCTCATGATATTTACG
CTCCAGATGGTTGTATCATACTTATTGTCCGCAATGGTAAAACATATAAC
AGCCAGATTAGATTCATTTCTGATGACATCAGCTtttcagatatggggaa
aaacaAATCACCTTATTGTAGATATAGG Coding sequence (CDS) from alignment at scaffold_154:310459..312836+ >TCONS_00049219 ID=TCONS_00049219|Name=TCONS_00049219|organism=Clytia hemisphaerica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_154:310459..312836+ (Clytia hemisphaerica)
ttattaggtatgaaaaaatattcaaatcataatgaaaaattatttatatt
AATAGCAGTATTACATTTAATTTCACTCATCTATAGCTCGAGTGATGTAT
CATGCCCAgttaaatttcaaataaactgCTGTTTGTTTACACGTACGAGT
AAATTAGGGATCCAACATCATTTAAAAACAGATTGCCGGCACTATGAACC
ATTTGTGAGTGGATCAGCGACAGTCATTTCAACCGAGAATGAATATGATC
TAGAATATTATAAGATTAAAACTCATAAATCTAAACATTTGATGCGACTG
AGATGGGTGCGTTTTAAATTATCAGGATCAACGCCGAAATGTTTTCAAGA
TTCAGTTTATATACAAATTGGGTGTTTTTGGTCGAAGATATATGGACCAT
TTTGTGGGAACACTTTACCTCATGATATTTACGCTCCAGATGGTTGTATC
ATACTTATTGTCCGCAATGGTAAAACATATAACAGCCAGATTAGATTCAT
TTCTGATGACATCAGCTtttcagatatggggaaaaacaAATCACCTTATT
GTAGATATAGGttattaggtatgaaaaaatattcaaatcataatgaaaaa
ttatttatattAATAGCAGTATTACATTTAATTTCACTCATCTATAGCTC
GAGTGATGTATCATGCCCAgttaaatttcaaataaactgCTGTTTGTTTA
CACGTACGAGTAAATTAGGGATCCAACATCATTTAAAAACAGATTGCCGG
CACTATGAACCATTTGTGAGTGGATCAGCGACAGTCATTTCAACCGAGAA
TGAATATGATCTAGAATATTATAAGATTAAAACTCATAAATCTAAACATT
TGATGCGACTGAGATGGGTGCGTTTTAAATTATCAGGATCAACGCCGAAA
TGTTTTCAAGATTCAGTTTATATACAAATTGGGTGTTTTTGGTCGAAGAT
ATATGGACCATTTTGTGGGAACACTTTACCTCATGATATTTACGCTCCAG
ATGGTTGTATCATACTTATTGTCCGCAATGGTAAAACATATAACAGCCAG
ATTAGATTCATTTCTGATGACATCAGCTtttcagatatggggaaaaacaA
ATCACCTTATTGTAGATATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049219-exon-scaffold_154-1491911889:310459..310829 | TCONS_00049219-exon-scaffold_154-1491911889:310459..310829 | Clytia hemisphaerica | exon |
| TCONS_00049219-exon-scaffold_154-1510915933:310459..310829 | TCONS_00049219-exon-scaffold_154-1510915933:310459..310829 | Clytia hemisphaerica | exon |
| TCONS_00049219-exon-scaffold_154-1575043694:310459..310829 | TCONS_00049219-exon-scaffold_154-1575043694:310459..310829 | Clytia hemisphaerica | exon |
| TCONS_00049219-exon-scaffold_154-1491911889:312647..312836 | TCONS_00049219-exon-scaffold_154-1491911889:312647..312836 | Clytia hemisphaerica | exon |
| TCONS_00049219-exon-scaffold_154-1510915933:312647..312836 | TCONS_00049219-exon-scaffold_154-1510915933:312647..312836 | Clytia hemisphaerica | exon |
| TCONS_00049219-exon-scaffold_154-1575043694:312647..312836 | TCONS_00049219-exon-scaffold_154-1575043694:312647..312836 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:310459..312836 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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