TCONS_00049238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049238
Unique NameTCONS_00049238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049238 ID=TCONS_00049238|Name=TCONS_00049238|organism=Clytia hemisphaerica|type=transcript|length=2449bp
tttagaaGTGTAAATAATGTCCTATAGATTATAAATAATCACTAGAGAAA
TAATGAATGAATCAGCAAGATTATGGCAAGGTGTTATATGGTTTTGCGGA
TtgtctttgttttggttttgattgCAAGTTTTATTGCTATTATTTATATT
AGTAAACCTATCACCCAAGATGAATTATTAGGAAGCAAAATTCGAAAAgC
ATCGAAAAGACATCAGAACTCAGACGATCATGAGATATGGATGCAAGAGA
TTGATTTACTTGTCAAACAATACCAAACTAAAAAAGAGCCTGACCtgAAC
AATCCATTTGAGCCGGTCCATGATGTGGagtttaaaattgaaaactgGGA
TTTTCCGACAGAGTTTACACCAGAGAAGACAGAAACCAGCGTTCCGCCAG
TAAAAGAGCGCCAAAAAGCACATTATAAACAAAATGATCACGTGGAAATG
AAACCGTCAGAATCAGTTaaTGGCTTCTTGAACGTGCACTTTTGGGGTAG
TTTTTGTGGCTCACGTATTGAAGATTTGAAACGAAACATTCATTTCCCGT
ACTATCCATCCGAAGTATCAAGCCTTACCAAATTTTATATACAACGATAT
GAGACTGGTTATGGACAAAGAATCTTTGGATATCTACATCCACCAGAATC
AGGAGAATTCACGTTCGCTGTTTCATGTGACGACAATTGTGAGGTCTGGT
TAAGCTCCTCTGACAATCCAAACAACATGAAACTAATTGCCAGCGTTGGT
ACCTTCAAAGACCCTGCCAATACAAAAATTGCTGATTTCCAAGCTTATCC
TTCACAAATCTCAAAACCGATTCTattaaacaaaaacaataaatactATG
TAGAAGTGTTACACAAACAAGGAGCTTACAAAGACCATGTACTGTTAACC
TGGCTAGCTCCAACTTGGGATCACATCCGAACTATAAATGCTAGTTACAT
TTCAAGCTACATCGATGTGAACGAGCAAATCCATGACGTAAACGACTATA
GATACCTAATACCGGTGACAAAGGCATGTCAAGGTTTGGAAGATCTTGAC
GTCACCAATAGTATTTACTACTACAATCGAACACATAATTCATTCACCAT
GTACGATTATCgtgaagattttttcaaactcaaatcaGTGGATATGTCGG
ATTTCACCAACTTATTACCCAGAATCCATTACAATCCGACTTACGTTTTA
GACTTTATGCCGAAGCGATATGAAGGTGTTAAATTGATGCACGAGAGCTC
CATCTATCCGTCCGATTACACTGAACTCACACATATGACNCGTGAAGTTA
ATGCACGAGAGCTCCATCTATCCGTCCGATTACACTGAACTCACACATAT
GACTAGATATACCAATTGTAAATCACCGCGCGAGACCGACTCTCATTATC
ATTATTTGGAAGGTTTTGAACCACGCGATGATGACGAGGGATATGGGACC
GACTTAGCAAGGGATAACTATAATGATGACTATATAGCTGTTAGGAAGAA
GGTTTCACTAAAACGGCTAAAATCTAAAGAAGGTTCTTTTGCAACAGACA
ATGTTGAGGATTTACGTAAAATGAATGCAAAGTCTAAACACCATATTGGT
AAAAAGGGTACAGGAAAGTCTGGTTCTATCCAATCCAATAGAAATGAGAA
GATTCATTTTAATTCTCGTAATTTAATGGCTTTTATTGATACTCAAACTA
ATCAAAATTCTGGACCCGTTTACAATAAAAGAGATAGTTTGAAAGGTACG
GATTTTGGCTATAATAAAGAAGATGTGAAAGATATCATGCGAAAAATGAA
GCATGCCAAGGCCAGTTTGGGTCAAGGTTTAGGTTTAGCTGTCAATCCCA
TGCAGTATCAATATCAATCGAGAGGTAGATCGCCCTCGGATGTTGGTCCT
CCTCGCCGTCAAGACTCGTATACGAAAAGTCGTGTTGCCCAAGTCAGAAG
GCCTGGTAACCCATACGGCAGTCAATCATATCAAAATGATGGACGATATG
GGCTTTATTATGGCGGTCGTTCTCGACGCCATCGCGCGAAGAAACCCACT
GTTTATAAaacgaaaatctttttcaaagacGGTAAATTAACAGACTCGAA
TGGTCAGAAACTGAATTTAACGGTTGGCGATAAAGCGATATTGATTCATT
ATTATCCGTTGTTTGGGACGGCTACTTATTATCTAGCAACCCCAACGATA
CGCCGCTCTATGTGGAAATACAAGACTTTCTTGTCTAAATGTCGGACTGA
AGGAAATCTACCCTTATTTTCCGGTGTAGCCGTTGGTGTTGTTAACGAAT
ACATGAAAGCAGTcaagaaaaaacataaaagTAAATACAAGTTGAAGAAG
ATAGTGAATGTGGAAGAAAACCATGACGTATTACGTGGTGATCGTTATCT
TATCGAAATAgaattatCAGTGGAAAATGAAGGACACACTGTATAAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_154:773152..785243+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049238 ID=TCONS_00049238|Name=TCONS_00049238|organism=Clytia hemisphaerica|type=transcript|length=12092bp|location=Sequence derived from alignment at scaffold_154:773152..785243+ (Clytia hemisphaerica)
tttagaaGTGTAAATAATGTCCTATAGATTATAAATAATCACTAGAGAAA
TAATGAATGAATCAGCAAGATTATGGCAAGGTGTTATATGGTTTTGCGGA
TtgtctttgttttggttttgattgCAAGTTTTATTGCTATTATTTATATT
AGTAAACCTATCACCCAAGATGAATTATTAGGAAGCAAAATTCGAAAAgg
tatcttttttgaaaaacttttacttTACAGATaagttgaattttgaaatt
caatttttggaaaCAAATTACTCAATTCTAACGAGCGTTATTCAAAGGAG
GATTATCCAAAATAGTGGCCCAAGTACATTCTTTAATTCTAACAGACCTC
TTTTGGTACAATACCTCATTTAAGCCTGTTTGATACATTTTAAAGCCTTT
ATCATTCTAACATTTCTTCCTagtgcaaaaaaaggaaaattaaatgaaga
aattttgaactttgttTTATAATTTGTAACATATTCAAGTTCAAGTTAAG
TATATTAATCACATAATACCTACATCATCATAATTAATATCAATGATTGT
TGAGCTACAATAATGGTTCACCAAAACAAAATAGTCAGATTGTTAAATCT
GTTATGTTGGTTTGCCAAATCCTGGGTTTGGTGAACAAAGAATACACAAG
AAAGACTGTTGGTCCCCTCAGCGgaacatttttttcagatttcacGCGCT
CGTGCCTAAAAATTGATCACCTGTGAGAAAATGAATatttaaatgaaata
aatacaCACTGGTAATTTCGTAGTCTCACTCCATGTCTATGTGCAGAGTG
GTCTAAATTTTAGTGACCAAAAAGGAGCAACCATTTAAAACGTCTTGATT
TTTGTCCTTTAAATATGCTTCGAAATGAACACTTTGCTTTCAAAAAAAGC
TGGGTGTAGCCGGCCAGGACCAGTCTTTGCTAgtgatataaataaaaaat
acgtAGGTACTAAAGTGAATATAAGGAAAATGTGTTACAATTTAAGTTTA
agctatatattttttaatgtgaCCTGCATACCAGCTGGCCCGCATGTTGG
GgcagaaaaaaagaatttgaaattggACCCTCtagaattaaaaaataaat
aaaaataggcATATATTTCTGTTCACATGATGATTGTGGTTTTCACAATC
ACGCCAAACTGTTAATAACGCCATTTCGCCGTAAAAATCTTGTTCTCAGG
ACTACCCAATAAATTCATTAATTTTCTCACTGTTACGCCATATCGTTCAA
ATACTCAACAATTTGGCCACTTTGAAATCTTCAAACGGCCGTTTCAAAAT
CGGTTCCAGGTATTCCACAGTAAAAGGGTCTTAAAAATGAGATggttata
attttaattttatctttttgaaaatcttaaagAATAAGATATAAAAGACA
GTGCTGACTGAAGCATATTAGCACAGTCTATCATTCTAATCATAAGCCCT
GCAAGGGATACAAGCTATCCTTTAGGATCGAAAATAAAGCCGCTTATTTC
TGCTTATTTCGAAAAATTTAccactggaaaaaaagaaaaccacTAAGTTT
AGTGTCATAtcggtttcactttttcttgctggGGAAAGATATAAGAATAG
CTTTTAACACCTTAAAGGCTTTCAGAAAGCAGTGGCCGCCTttttttgct
ccggcctaggagcctttagttctctcttccgacaatggtcaagacatttt
ttgtctgtttatctAATCCAATGATCTATTTCGATTTAACAAAAACGGAT
CACTGATTCcgataatactgtgatttgattggccgaaaagtatttagaaa
aagatggctgccgaaagtggactactagctgactgtgtagcaaatactgg
caaatctcagtgaaaaattgatcattttcatccttattcaagtttgatgc
atactggctctctaacaatgtggaaagactttggagaaattttggccttG
AATCTTTTGCTGATCGAGTGTTTATAATGCATATAACTAttatggctaac
ttctctacTAGACacacaaaaccaaaaaactctGTTTTTTCAAGATTGAT
GGAAACTTTTTGAGAGCAAACTATTAATATATTTGAATTCAGTATACTAC
TTGTGTGTAAATTTGAGTAAGATTGGTGCATTTCTCATGATTTTATGCTG
TAAAAATGAtctatttttgacttttggtcatttttcatgatgatataAAT
GGTGGTTGTCCCTTTTGGATTTTtgaaacttgacaatgaaactttcaaac
acacagccattgaaaatcaaaagagaatactaaattACAATTACAGTGTA
AATTCTAAAACGATCTGAgtattttttgtggtgttatgtatggctgaaaa
tgatcctgttttggactttgttattgTCGTATTCATCATCGGCtagcgac
cgttccttttgatttttcaaacccgacacagattttttacaaacatatca
ctatgagaattcaataaaggatactgaaacacagttcctgtgtaaatttt
aacaagcttggagaaattttcacagtcagacctagtgttatggctgaaaa
ttatcatttttggactttgttgtaatttcatcgcggctttgtgaccattc
cttttgattttcgAGCCCGACACAGATTCTTTCCAAACATACCACTGTag
gaattcaataaaggatactaaaacacaaattcctgtgtaaatttgaacaa
gatcggagaaattttcacagtattgtGGCTGAAATgatcattttttggac
tttgtcgtaatttttAAGGGCTTgctgggcgaccgttccttttgaagatt
ttttaaaccggacacaggttttttccaaatatactacaattacatacaca
ctatcgcaccattttatttgatttatccTAGCCttctccaagtattatcc
caacagaataatgcttagctaaaagccgtagcctctaatttaggctattt
ttctcccggtccggacaatcaaatcaacgggcGCATCATGGCTTGGCTAT
TGGCtagtttagaaaaatataaatttataagaacttggaaatattgactt
ctaaaagTTTATCTCCTTTAGATCCAATTTTGTCCTTTTTAGTCGGGGGA
TGAGTGGGGGGGGGTTGGCACTTTAGGCAAGAAattgcatgtgtaatcac
ttagaagagctaaacttccagctggtttagtTATTCATAAAGATTATTTC
CCATACTCGCTCTACAATAAAATTCAACAAACTCATtcttcacatctttt
aatctcttaagccggagcttccagcgcagctggtttatttttattataac
tGGTGATTGAAAGAAACTCACAGATACACTACGAACAAAACAATAAAGCA
CTACTAAACATAAATATAGGCTCTTTCCAGAGGTACAAAACTATAGTTCT
TTTTAATAACAATAGAATGAAATAAAACAGTCTTTTAAGAAATTCAATTG
AGAGTATGTTCTGTTGAAGAATTTGAAGGACAATATGTGTAATAATGTGA
TGCCGACCCACGTCTAGGTCGACACCACACTATTAACGGGTGGAGGACTA
GTCCAAACATCAAACAGAGAAGGGGAAACTGTACGTATTTCTGTGCCTAC
TATATACTATCTTACATTCTAATGAACTCTTACCTTACACTCAGAAACCA
CCGTTCCATGTTAGGTCCGAAACTAGACTCCCAGATTAGGCGATCTGAGC
AAAGCAAAACACTTTCAAGTTCACTCAACCGTAAGGAGGGCGTTACTGGC
GTAAAGGGTGGTTTCTGGGCGTAGTACAGAGGCTATATAATTGCCTCTGT
ACATATGTATTGTCCGAGACAAAAACCGCGTTGAGAATCTTTGATTCGGA
TGGCCGCTTTTTGCATCAAATGTTATGCGAGTCGTTATCACAGCAGATCG
GTTTCTTTCCATAACTTCCCATCGAACAGCACTTAAGGAATATTGTATTG
CTACAATTGAACTCGACAGcaaagaaacttgttttttcttttcctgcTAT
AATGAGCCTGAAACTTCTAGCAGAATTCATCAATTTTGACCGAGTCACAA
CAAAAACTTACTGTTTTATATTCAACAGggtgcatttatcaaaaatattg
ttCACGCCTTATCGACGTCAAACAAGAATTGACTAAGGATAAGACAGCAT
TCCAATTGTACGATGCGTGCTGATGGttgttttttatcattattttagtA
TACTTTTCTTTTCTTAGCATCGAAAAGACATCAGAACTCAGACGATCATG
AGATATGGATGCAAGAGATTGATTTACTTGTCAAACAATACCAAACTAAA
AAAGAGCCTGACCtggtaaaaaaattttgtctGTATTAAAACATGCTTTC
AACCTGTTTCAAATGATTGTCTTAAGTGCTTGAATACTTAAACTTAGAAT
ATTTTCATTGAAACGCTGGTGCAAATTATCAGAAAAAAATGTCCTTTTCT
CCAATCGAATTGAAGATCCACATCATCGAAGCAGATTGACAGGAAGCTGT
AAAATCTTATAccacaaaaagttgaaaagactGATATTTATTATCCAAAC
TGCGATAGGACTTTATGCCAATGGGGACGAAAATCACTTTTTATTATTGA
TGGGGTTTTAAATTTCTAGCGTTTACAGCTCAAAAGATTCAATAAGGATG
GAATTATGGGCTTTGTTTTATGTCAATCCATGGGTTTGAAGAATCACTTG
TCTTTAAAGGGGTTGAAGTCCTCGCTGTTTTTCCCAGTGGAAGAGTTGGT
AGCTGTATTTTCCTAAAAAGGATGGAGTTCCAGGGTGGCTTTTGCTGATT
CTGGGTATGTAATATGGGGAAGTATTGAGTGTAAACTATTCTAAACTGTA
CCGTCCTACTGGAATAATATCCTGATCTCATTGCGATTTTATATTACAGA
ACAATCCATTTGAGCCGGTCCATGATGTGGagtttaaaattgaaaactgG
GATTTTCCGACAGAGTTTACACCAGAGAAGACAGAAACCAGCGTTCCGCC
AGTAAAAGAGCGCCAAAAAGCACATTATAAACAAAATGATCACGTGGAAA
TGAAACCGTCAGAATCAGTTGTAAGTTTTTTAAcaagacaatttttttct
caataataTGTATTCAGAGCATTAGATAAAGCTTACTAAAAACTTACTAA
AAAGGAGCAAATAGTCCAGTTTTTTTGGAGGGATTTAAACTTTTGATCTT
AAAAATAAtatatgaaaaatctgaaaactgattttgaagtcagtaaaaaa
aagtgaattattattttttggttCCAGTAGaaagtttaatttttgaaata
tcttccCTAGAGGTATTATTGTTGAAACtatatctttttctttcaaCTGG
AAACGAGGAAATAGAATTTAtaaatagaacttttcaaaattatagtttaa
ggggggggggctctatCTCTCTTGGTTCCATTTCTCTATTACCAGATAAG
GCCAGTTAGATAAACCTTTTTCTATTATTTGCATGTCTATAGTGAAATAA
TATTTATTAATAAGACagtgaatttttcatagaaTGGCTTCTTGAACGTG
CACTTTTGGGGTAGTTTTTGTGGCTCACGTATTGAAGATTTGAAACGAAA
CATTCATTTCCCGTACTATCCATCCGAAGTATCAAGCCTTACCAAATTTT
ATATACAACGATATGAGACTGGTTATGGACAAAGAATCTTTGGATATCTA
CATCCACCAGAATCAGGTATAATTAAATTAAGTTATGTAATTTTTGCTAC
TTCCGTCAGTGATCACCCCTACAGAAcatttatttccataatggtagaAA
TTACGTAACTTGGCAAATCATGAAAAATCTATATCCATCCATACATTTTG
ATATTTATATAGAAGGGTCCGAAAACAGGGAAGTTGAATCTAATCTCAAT
CGCAGAAACCTAAAAGGGGCTTGATATACAGAGCGCAAAACTAAAGGCGG
TTTAtagacaaaaacttttttcatgatcTTAACTATTCGAAGATTTTAGG
CAAGAAAATCCAAAGACGTAGGGAGGGATCTTGTACTAATTTTCATAATT
GACGAATTCTATTTCAAATTTCAGGAGAATTCACGTTCGCTGTTTCATGT
GACGACAATTGTGAGGTCTGGTTAAGCTCCTCTGACAATCCAAACAACAT
GAAACTAATTGCCAGCGTTGGTACCTTCAAAGACCCTGCCAATACAAAAA
TTGCTGATTTCCAAGCTTATCCTTCACAAATCTCAAAACCGATTCTatta
aacaaaaacaataaatactATGTAGAAGTGTTACACAAACAAGGAGCTTA
CAAAGACCATGTACTGTTAACCTGGCTAGCTCCAACTTGGGATCACATCC
GAACTATAAATGCTAGTTACATTTCAAGCTACATCGATGTGAACGAGCAA
ATCCATGACGTAAACGACTATAGATACCTAATACCGGTGACAAAGGCATG
TCAAGGTTTGGAAGATCTTGACGTCACCAATAGTATTTACTACTACAATC
GAACACATAATTCATTCACCATGTACGATTATCgtgaagattttttcaaa
ctcaaatcaGTGGATATGTCGGATTTCACCAACTTATTACCCAGAATCCA
TTACAATCCGACTTACGTTTTAGACTTTATGCCGAAGCGATATGAAGGTG
TTAAATTGATGCACGAGAGCTCCATCTATCCGTCCGATTACACTGAACTC
ACACATATGACNCGTGAAGTTAATGCACGAGAGCTCCATCTATCCGTCCG
ATTACACTGAACTCACACATATGACTAGATATACCAATTGTAAATCACCG
CGCGAGACCGACTCTCATTATCATTATTTGGAAGGTTTTGAACCACGCGA
TGATGACGAGGGATATGGGACCGACTTAGCAAGGGATAACTATAATGATG
ACTATATAGCTGTTAGGAAGAAGGTTTCACTAAAACGGCTAAAATCTAAA
GAAGGTTCTTTTGCAACAGACAATGTTGAGGATTTACGTAAAATGAATGC
AAAGTCTAAACACCATATTGGTAAAAAGGGTACAGGAAAGTCTGGTTCTA
TCCAATCCAATAGAAATGAGAAGATTCATTTTAATTCTCGTAATTTAATG
GCTTTTATTGATACTCAAACTAATCAAAATTCTGGACCCGTTTACAATAA
AAGAGATAGTTTGAAAGGTACGGATTTTGGCTATAATAAAGAAGATGTGA
AAGATATCATGCGAAAAATGAAGCATGCCAAGGCCAGTTTGGGTCAAGGT
TTAGGTTTAGCTGTCAATCCCATGCAGTATCAATATCAATCGAGAGGTAG
ATCGCCCTCGGATGTTGGTCCTCCTCGCCGTCAAGACTCGTATACGAAAA
GTCGTGTTGCCCAAGTCAGAAGGCCTGGTAACCCATACGGCAGTCAATCA
TATCAAAATGATGGACGATATGGGCTTTATTATGGCGGTCGTTCTCGACG
CCATCGCGCGAAGAAACCCACTGTTTATAAaacgaaaatctttttcaaag
acGGTAAATTAACAGACTCGAATGGTCAGAAACTGAATTTAACGGTTGGC
GATAAAGCGATATTGATTCATTATTATCCGTTGTTTGGGACGGCTACTTA
TTATCTAGCAACCCCAACGATACGCCGCTCTATGTGGAAATACAAGACTT
TCTTGTCTAAATGTCGGACTGAAGGAAATCTACCCTTATTTTCCGGTGTA
AGTATATTGTATACAGGTTTTGACTAAGTTACTCAACTAAATTACCATTT
GGGGAGAAAATATTGGAATCGCGTAAGGGATTGCctcaaaaacaaaacta
aaatattTCTTCCTTAATGACAGATCTTTTATAACAATTCTGAAACACTT
AGTTACATACCCCCTAAGTAAACCGCTTTTAGATATTACTTTTTGGTCtt
tttaaaaatccttttaaaGTTTCCATTTTGAGCCACTTGAATGGACTTGT
GTACTTTTTTGGGGTCGGGTAAAGTGAATTTTCATGTCTCATCTTGTCTT
TATTCATCCTGAGATTATGTTCTCCAAATTGTGTGTTTTCGCTTATCACA
AACAAATTTCTTTTCCGCAGGTAGCCGTTGGTGTTGTTAACGAATACATG
AAAGCAGTcaagaaaaaacataaaaggTATAATTAATTTTCCATATTATA
AGCAATGTTACGTAATAAACANTAAAGAAGATGTGAAAGATATCATGCGA
AAAATGAAGCATGCCAAGGCCAGTTTGGGTCAAGGTTTAGGTTTAGCTGT
CAATCCCATGCAGTATCAATATCAATCGAGAGGTAGATCGCCCTCGGATG
TTGGCCCTCCTCGCCGTCAAGACTCGTATACGAAAAATCGTGTTGCTCAA
GTCAGAAGGCCTGGTAACCCATACGGCAGTCAATCTTATCAGAATGATGG
ACGATATGGGCTTTATTATGGCGGTCGTTCTCGACGCCATCGTGCCAAGA
AACCCACTGTTTATAAaacgaaaatctttttcaaagacGGTAAATTAACA
GACTCGAATGGTCAGAAACTGAATTTAACGGTTGGCGATAAAGCGATATT
GATTCATTATTATCCGTTGTTTGGGACGGCTACTTATTATCTAGCAACCC
CAACGATACGCCGCTCTATGTGGAAATACAAGACTTTCTTGTCTAAATGT
CGGACTGAAGGAAATCTACCCTTATTTTCCGGTGTAAGTATATTGTATAC
AGGTTTTGACTAAGTTACTCAACTAAATTACCATTTGGGGAGAAAATATT
GGAATCGCGTAAGGGATTGCctcaaaaacaaaactaaaatattTCTTCCT
TAATGACAGATCTTTTATAACAATTCTGAAACACTTGCATACCCCCCCCC
CTAAGTAAACCGCTTTTAGATATTACTTTTGGgtctttttgaaaatcctt
ttaaaGTTTCCATTTTGAACCACTTGAATGGACTTGTGTACTTTCTTGGG
GTCGGGTAAAGTGAATTTTCATGTCTCATCTTGTCTTTATTCATCCTGAG
ATtatgttctcaaattttttttttttttttttgaatgtgaAGTCGGAATT
TCTTGTCACGtgacaaataaattttcaacatccAATGAATTTATACTTGT
TATACATGTTCTCAAAATTGCGTGTTTTTGCTTATAAATAACAATGACAT
ATGCACaaacaaatttcttttccatAGGTAGCCGTTGGTGTTGTTAACGA
ATACATGAAAGCAGTcaagaaaaaacataaaaggTATAATTAATTTTCTA
TATTATAAGCAATGTTACGTAATAAACAGTACTGGATATCAATCACTACA
AATAGACCTTGtcggagtttttaatttttctaaaaaagcgatgtattgtg
ggattgtttcgaggaGGAATCGTTGATAAAGCGTACCAAGGGTCTTGATT
AGCCTGTACCACCTCAGTGCAAGCGAAACAGCTGATTTCTTACCTCGCAA
CCTTTAGGGAAAAAAGGGGCAGAGAAGGTTTTGAAacgaggcccggaatt
cccgagttattttttccgagttaaaaaaaccgacttaaaaaaaaccgagt
taccccgagttatgacgtcatttttggaatttagtgacgtcatttttcat
ttcataactcggtttattttgcttcccttaactttccgagttattttcca
ttcttaactcgggaatttttgcttcctttaactttccgagttattttcca
ttttttaactcgggaatttttgcttccttcaactttccgagttatttttg
aatttttaactcgggaatttttgcttcctttagctttccgagttattttt
cttcataaaaaaacaccagttttaatctattgatcccataccaacctaaa
tcaaagacataaccatccattaccaactagaaaaaccttaacctgcttaa
taaaatgaataatcaacaaacacgtgaataattgaaaagcaagaactgaa
gttaaaacctgctagataaacaaagtgtaagcccttcaaaaatattacag
catagataaaatctcaaaaaatacaacagttaagtgatgagataaagcta
tttcaaaatttatatttcctCCCTATTTCATTAGAATACTGTAAGTGACA
TGACAAGATTCTCAGAAAAATTCACCGAgtccttcccccttcgctgtaaa
aattttgaatgaatcacCAACGATTTTTGAATCAATCATTTCACAGACAA
TTCGTAGATTTTTATGAgagatgttaaaaaataaataaataaaactgtCC
AGAGTGCACACACTCACCAAATCAACTtacagaaaaacattcgaaagttt
cTCGCGCGCGTGTGACCtttgcaaaacattcgaattatgaatcgaatctt
tttgtgtcataaggctctaattagactTGCGGTAAAAAACATTCCGGGGG
TCAAATAcgctaatttttcaaaatggaaagTCTTTAAATGTTGACCTGTA
GGTATATTGTTATTCGAATGTTAACCCccgtctttttataaaaataattc
gaacATCAAACCCCATTCTGCGCAATGTGAAGTGAAAGAtactggaaaat
tttacttaagcaACGAGGAAACTGCTACTCGAGTTTTTTGTCACTCGTTG
TCACACGTACAAAGAATAAACGTAACGTAAGCGAATGAATGAACACCAAA
TTTTCGTAAGGTCTTaggtaaaattttacgtgcatgtgagaaaattttta
gaaGCAGAAAAGTCGCCCTTGGCTTGGCACATCCCtgtgttattgaaaaa
caatggaGGGATCGTGTAAGACCCGTTCGGCTTTATAGAAGCCCCGggga
tactagggttgcgagctgacgggtatgtgccgcaaaaatcgagaaaaaaa
tgatttttcgggattttgtgacccttattggaacttttggctgtttttac
aagccaaaaaaaaaatggaaaataactcggaaagctaaaggaagcaaaaa
ttcccgagttaaaaattcaaaaataactcggaaagctaaaggaagagAAA
ATTCCCGAGTTAAAAAATGAAAAATAACTCGGAAAGTTAAAGGAAGCAAA
ACTTcccgagttaaaaaatggaaaataactcggaatgttaaaggaagcaa
aaattcccgagttaaaaaatggaaaataactcggaaagttaaaggaagca
aaaaacccgagttaaaaaatggaaaataactcagaaaattaaaggaagca
aaataaaccgagttatgaaatgaaaatcgacgtcactaaattccaaaaat
gacgtcataactcgggataactcgggtcttttttaactcggtttttttaa
ctcggaaaaaataactcgggaattcggGGCCTCGTTTGAAACAGGCTAGG
CTCGAGGTAAGAGTATGTACTCGGTCGAATCGTAAAATATTgtttttcgt
ttgtttttttaCAGTAAATACAAGTTGAAGAAGATAGTGAATGTGGAAGA
AAACCATGACGTATTACGTGGTGATCGTTATCTTATCGAAATAGTAAGTG
TTCAACAGTAAGTGTTCAAGGATTGTTGTTTAGTCTAGCATGCCAGACGA
TTGGATTTGGAAGAGAGGGTAGTATGGTCAAAGGCCCCGGTGAGACGTTT
GAAGTGGGGtggtcaaaacttttgaaacatttttcagtttttgcgcCTTG
TAAACACCTTAAAACGCTTTTTAGTTGGATAAAGCAGGATTTGGACTTTT
TAGACTGCAAAATATTCGGTTGGTCATGCCCCTAGTATTTCATCGCTTCA
GATTTCTTTTAGAAATATAAATATATCTAGCCTTTCCCACTCTTAATGCT
CTTACCACGGTCGATTTTTGCAGGCTTTTTTCCTGCGAAGAAGAATTtgg
taaatttttcttttttttcaggaattatCAGTGGAAAATGAAGGTAagtg
cattttttattttcctttgaTTGTATTAATACACTCAAATCAACATTAGC
GTCACTACAGCGTGTCCCAAAAAAGCGGACGAATTTATATAAAGTAAATT
TCTCATTATTTATTTCAACTACGCGGTTTAGAtataggattttattttat
ataaagATTTGTCCGCTTATTTCAGGACACACTGTATAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031264XLOC_031264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049238-exon-scaffold_154-1491911889:773152..773350TCONS_00049238-exon-scaffold_154-1491911889:773152..773350Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:773152..773350TCONS_00049238-exon-scaffold_154-1510915933:773152..773350Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:773152..773350TCONS_00049238-exon-scaffold_154-1575043694:773152..773350Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:777369..777466TCONS_00049238-exon-scaffold_154-1491911889:777369..777466Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:777369..777466TCONS_00049238-exon-scaffold_154-1510915933:777369..777466Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:777369..777466TCONS_00049238-exon-scaffold_154-1575043694:777369..777466Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:778051..778221TCONS_00049238-exon-scaffold_154-1491911889:778051..778221Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:778051..778221TCONS_00049238-exon-scaffold_154-1510915933:778051..778221Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:778051..778221TCONS_00049238-exon-scaffold_154-1575043694:778051..778221Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:778684..778867TCONS_00049238-exon-scaffold_154-1491911889:778684..778867Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:778684..778867TCONS_00049238-exon-scaffold_154-1510915933:778684..778867Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:778684..778867TCONS_00049238-exon-scaffold_154-1575043694:778684..778867Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:779226..780848TCONS_00049238-exon-scaffold_154-1491911889:779226..780848Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:779226..780848TCONS_00049238-exon-scaffold_154-1510915933:779226..780848Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:779226..780848TCONS_00049238-exon-scaffold_154-1575043694:779226..780848Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:782329..782384TCONS_00049238-exon-scaffold_154-1491911889:782329..782384Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:782329..782384TCONS_00049238-exon-scaffold_154-1510915933:782329..782384Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:782329..782384TCONS_00049238-exon-scaffold_154-1575043694:782329..782384Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:784566..784644TCONS_00049238-exon-scaffold_154-1491911889:784566..784644Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:784566..784644TCONS_00049238-exon-scaffold_154-1510915933:784566..784644Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:784566..784644TCONS_00049238-exon-scaffold_154-1575043694:784566..784644Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:785023..785044TCONS_00049238-exon-scaffold_154-1491911889:785023..785044Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:785023..785044TCONS_00049238-exon-scaffold_154-1510915933:785023..785044Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:785023..785044TCONS_00049238-exon-scaffold_154-1575043694:785023..785044Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1491911889:785227..785243TCONS_00049238-exon-scaffold_154-1491911889:785227..785243Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1510915933:785227..785243TCONS_00049238-exon-scaffold_154-1510915933:785227..785243Clytia hemisphaericaexon
TCONS_00049238-exon-scaffold_154-1575043694:785227..785243TCONS_00049238-exon-scaffold_154-1575043694:785227..785243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:773152..785243 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0654791	0.0391742	0	0	2.79666	2.10132	0.591616	1.01238	0.906619	0.935951	0.365315	0.907229	0.347613	0.734204	1.00458	0.770682	1.12107	1.32261	0.675132	0.597573	0.235214	0.410927	0	0.142233	0.822182	0.26887	0.45468	0	0.385687	0.0241953
Blast
[Close]
BLAST of TCONS_00049238 vs. Swiss-Prot (Human)
Match: B4GN3 (Beta-1,4-N-acetylgalactosaminyltransferase 3 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.560e-43
Identity = 102/275 (37.09%), Postives = 157/275 (57.09%), Query Frame = 1 
Query:  472 GFLNVHFWGSFCGSRIEDLKRNIHFPYYPSEVSSLTKFYIQRYETGYGQRIFGYLHPPESGEFTFAVSCDDNCEVWLSSSDNPNNMKLIASVG-TFKDPANTKIADFQAYPSQISKPILLNKNNKYYVEVLHKQGAYK-DHVLLTWLAPTWDHIRTINASYISSYIDVNEQIHDVNDYRYLIPVTKACQGLEDLDVTNSIYYYNRTHNSFTMYDYREDFFKLKSVDMSDFTNLLPRIHYNPTYVLDFMP-KRYEGVKLMHESSIYPSDYTELTHM 1287
            G  N+H +  +CGS I+ L+RN+HFP YP   ++L K  +    T YG RIFGYLHP   G+  FA++ DDN E WLS  D  + ++L+ASVG T K+   T   +F  + SQISKP+ L+ +++YY EVLHKQ     DHV + W         TI  S +S  +  NE    +++  + IP T A      +D +N++    +        D R+  +++  +  S   ++LP   Y P+Y++D +P +RY+G++ +H S +YP+DYT L+HM
Sbjct:  120 GRANLHVFEDWCGSSIQQLRRNLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDGKIQFAIAADDNAEFWLSLDDQVSGLQLLASVGKTGKE--WTAPGEFGKFRSQISKPVSLSASHRYYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDS-LSLSLFTNETFLQMDEVGH-IPQTAASH----VDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPYKPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHM 386
The following BLAST results are available for this feature:
BLAST of TCONS_00049238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN31.560e-4337.09Beta-1,4-N-acetylgalactosaminyltransferase 3 OS=Ho... [more]
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