TCONS_00049242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049242
Unique NameTCONS_00049242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049242 ID=TCONS_00049242|Name=TCONS_00049242|organism=Clytia hemisphaerica|type=transcript|length=2259bp
AGAAGATGTGAAAGATATCATGCGAAAAATGAAGCATGCCAAGGCCAGTT
TGGGTCAAGGTTTAGGTTTAGCTGTCAATCCCATGCAGTATCAATATCAA
TCGAGAGGTAGATCGCCCTCGGATGTTGGCCCTCCTCGCCGTCAAGACTC
GTATACGAAAAATCGTGTTGCTCAAGTCAGAAGGCCTGGTAACCCATACG
GCAGTCAATCTTATCAGAATGATGGACGATATGGGCTTTATTATGGCGGT
CGTTCTCGACGCCATCGTGCCAAGAAACCCACTGTTTATAAaacgaaaat
ctttttcaaagacGGTAAATTAACAGACTCGAATGGTCAGAAACTGAATT
TAACGGTTGGCGATAAAGCGATATTGATTCATTATTATCCGTTGTTTGGG
ACGGCTACTTATTATCTAGCAACCCCAACGATACGCCGCTCTATGTGGAA
ATACAAGACTTTCTTGTCTAAATGTCGGACTGAAGGAAATCTACCCTTAT
TTTCCGGTGTAGCCGTTGGTGTTGTTAACGAATACATGAAAGCAGTcaag
aaaaaacataaaagTAAATACAAGTTGAAGAAGATAGTGAATGTGGAAGA
AAACCATGACGTATTACGTGGTGATCGTTATCTTATCGAAATAgaattat
CAGTGGAAAATGAAGCATCAACAAGACGATTGTCAACCTATATATACCGC
GATGCAGTCAAAAACAAACTATACCGTCCCAGTGGTTTTGTTTGGAATCC
CAAAGCTACTGTCCACGTAATTGTACCAGtCAAGAATCAGGGACGATGGG
TACAACATTTCATTGATAACATGGAACAGGTCTATCTGGAAACACAGGAT
GTGAATTTGAACGTGATAATTGCTGATTTCAACTCCTCTGATATTGATAT
CAAGAAAAGTTTCGACAGAAGTCGACTCAAAAGGTACAACTTTCTTAACT
TGGACGGCCCATTTGAAAGAGCTTTCGGCTTACAAGCTGGCGCTGATCTT
GTGAAGAACGAAGATGATATAATATTCACCTGTGATTTGCATTTGGACAT
CCCACCTATTCTCATCGATACCATACGAAAGCATACGATTAAGAAACGAT
TGAGTTTTGCACCAATGGTCCATCGCTTAAGCTGTGGCTACACACCAGAT
CTCCCCTATGGACTATGGGAGACAGAAGGTTACGGATTGTTTTCTATCAC
CAAACATGATTTTGACCGCATTGGTGGAATGAACACTAaagaattcaaaa
caaaatggggCGGAGAGGATTGGGAATTCCTTGACAGAGCGTTAGGCCAT
GGACTGGAAGTGGAACGTCTTCGTGTGCCAAACTTCTTTCACCACTATCA
TTCACGTAAGAAAATGTGGCAAGCATCAACATCATCCAGCAAGTCTTCTA
CCATCGTCCCTCAATCAGCTTATTATAATTCTCGGGATAGCAGCAGCAAC
ACTGTTGTTAAAACTACTTCGACTACACCTAATCCATTCCCAGAGTAAGG
TACATTTTGCTCTGTTTCCTCTTTAACTAGCCTACTACGTGCCTCGAGAT
ATAGCACCAGCAACACTGTGGTTAAAATCACCTCGACCGAATTATTTTCC
TTTCTCAATCCCAAAGCCCCATGTTGCGTTAGGAAAGATTGGTGTATATT
TAAACGAATCAATCCTTTGATACATCTTTAGTAAAAAAGTGTTTATTAAC
AGAAGCTTCTTGatcattttttctaaaatttatttgTAGACGTTTCGGCT
TCTCAACAGAGAACCATCCTCAGTACAGTAAAAATTGAGTATATTTCTTG
CTTTAAATTCTTGCTGTGCACTCTTTAGTTATACCGATTCTTTTACAACA
ACCTTATAGAAACATATTTGACAGTAATGCCTTTTTAGATTTGTGAAGTA
GTGATTGATAGTTGGATATCTATTTCACACTTTAGGTTTCGTATTAGCTA
GCAATGAACTTACGTAGTACCTACttatttaaagccaattttatttAGTC
AATCAAGATAACCGAGAAATATATCATATATCATTCTTTAAgcatttatt
tttagaaatattcttaagggctacatacactgcacaatatattgtcagac
aatatattgatgatatattgctgagtgccggcaatatattgaaatggtgc
cggcaatatattgaaatggtgtccgcaatatattgtcagcttgatttgca
attttccaacaatatagggggattgtttaaaaaaagatttcctttttata
atagagcac
Run BLAST on NCBI

transcript from alignment at scaffold_154:781327..792953+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049242 ID=TCONS_00049242|Name=TCONS_00049242|organism=Clytia hemisphaerica|type=transcript|length=11627bp|location=Sequence derived from alignment at scaffold_154:781327..792953+ (Clytia hemisphaerica)
AGAAGATGTGAAAGATATCATGCGAAAAATGAAGCATGCCAAGGCCAGTT
TGGGTCAAGGTTTAGGTTTAGCTGTCAATCCCATGCAGTATCAATATCAA
TCGAGAGGTAGATCGCCCTCGGATGTTGGCCCTCCTCGCCGTCAAGACTC
GTATACGAAAAATCGTGTTGCTCAAGTCAGAAGGCCTGGTAACCCATACG
GCAGTCAATCTTATCAGAATGATGGACGATATGGGCTTTATTATGGCGGT
CGTTCTCGACGCCATCGTGCCAAGAAACCCACTGTTTATAAaacgaaaat
ctttttcaaagacGGTAAATTAACAGACTCGAATGGTCAGAAACTGAATT
TAACGGTTGGCGATAAAGCGATATTGATTCATTATTATCCGTTGTTTGGG
ACGGCTACTTATTATCTAGCAACCCCAACGATACGCCGCTCTATGTGGAA
ATACAAGACTTTCTTGTCTAAATGTCGGACTGAAGGAAATCTACCCTTAT
TTTCCGGTGTAAGTATATTGTATACAGGTTTTGACTAAGTTACTCAACTA
AATTACCATTTGGGGAGAAAATATTGGAATCGCGTAAGGGATTGCctcaa
aaacaaaactaaaatattTCTTCCTTAATGACAGATCTTTTATAACAATT
CTGAAACACTTGCATACCCCCCCCCCTAAGTAAACCGCTTTTAGATATTA
CTTTTGGgtctttttgaaaatccttttaaaGTTTCCATTTTGAACCACTT
GAATGGACTTGTGTACTTTCTTGGGGTCGGGTAAAGTGAATTTTCATGTC
TCATCTTGTCTTTATTCATCCTGAGATtatgttctcaaattttttttttt
tttttttgaatgtgaAGTCGGAATTTCTTGTCACGtgacaaataaatttt
caacatccAATGAATTTATACTTGTTATACATGTTCTCAAAATTGCGTGT
TTTTGCTTATAAATAACAATGACATATGCACaaacaaatttcttttccat
AGGTAGCCGTTGGTGTTGTTAACGAATACATGAAAGCAGTcaagaaaaaa
cataaaaggTATAATTAATTTTCTATATTATAAGCAATGTTACGTAATAA
ACAGTACTGGATATCAATCACTACAAATAGACCTTGtcggagtttttaat
ttttctaaaaaagcgatgtattgtgggattgtttcgaggaGGAATCGTTG
ATAAAGCGTACCAAGGGTCTTGATTAGCCTGTACCACCTCAGTGCAAGCG
AAACAGCTGATTTCTTACCTCGCAACCTTTAGGGAAAAAAGGGGCAGAGA
AGGTTTTGAAacgaggcccggaattcccgagttattttttccgagttaaa
aaaaccgacttaaaaaaaaccgagttaccccgagttatgacgtcattttt
ggaatttagtgacgtcatttttcatttcataactcggtttattttgcttc
ccttaactttccgagttattttccattcttaactcgggaatttttgcttc
ctttaactttccgagttattttccattttttaactcgggaatttttgctt
ccttcaactttccgagttatttttgaatttttaactcgggaatttttgct
tcctttagctttccgagttatttttcttcataaaaaaacaccagttttaa
tctattgatcccataccaacctaaatcaaagacataaccatccattacca
actagaaaaaccttaacctgcttaataaaatgaataatcaacaaacacgt
gaataattgaaaagcaagaactgaagttaaaacctgctagataaacaaag
tgtaagcccttcaaaaatattacagcatagataaaatctcaaaaaataca
acagttaagtgatgagataaagctatttcaaaatttatatttcctCCCTA
TTTCATTAGAATACTGTAAGTGACATGACAAGATTCTCAGAAAAATTCAC
CGAgtccttcccccttcgctgtaaaaattttgaatgaatcacCAACGATT
TTTGAATCAATCATTTCACAGACAATTCGTAGATTTTTATGAgagatgtt
aaaaaataaataaataaaactgtCCAGAGTGCACACACTCACCAAATCAA
CTtacagaaaaacattcgaaagtttcTCGCGCGCGTGTGACCtttgcaaa
acattcgaattatgaatcgaatctttttgtgtcataaggctctaattaga
ctTGCGGTAAAAAACATTCCGGGGGTCAAATAcgctaatttttcaaaatg
gaaagTCTTTAAATGTTGACCTGTAGGTATATTGTTATTCGAATGTTAAC
CCccgtctttttataaaaataattcgaacATCAAACCCCATTCTGCGCAA
TGTGAAGTGAAAGAtactggaaaattttacttaagcaACGAGGAAACTGC
TACTCGAGTTTTTTGTCACTCGTTGTCACACGTACAAAGAATAAACGTAA
CGTAAGCGAATGAATGAACACCAAATTTTCGTAAGGTCTTaggtaaaatt
ttacgtgcatgtgagaaaatttttagaaGCAGAAAAGTCGCCCTTGGCTT
GGCACATCCCtgtgttattgaaaaacaatggaGGGATCGTGTAAGACCCG
TTCGGCTTTATAGAAGCCCCGgggatactagggttgcgagctgacgggta
tgtgccgcaaaaatcgagaaaaaaatgatttttcgggattttgtgaccct
tattggaacttttggctgtttttacaagccaaaaaaaaaatggaaaataa
ctcggaaagctaaaggaagcaaaaattcccgagttaaaaattcaaaaata
actcggaaagctaaaggaagagAAAATTCCCGAGTTAAAAAATGAAAAAT
AACTCGGAAAGTTAAAGGAAGCAAAACTTcccgagttaaaaaatggaaaa
taactcggaatgttaaaggaagcaaaaattcccgagttaaaaaatggaaa
ataactcggaaagttaaaggaagcaaaaaacccgagttaaaaaatggaaa
ataactcagaaaattaaaggaagcaaaataaaccgagttatgaaatgaaa
atcgacgtcactaaattccaaaaatgacgtcataactcgggataactcgg
gtcttttttaactcggtttttttaactcggaaaaaataactcgggaattc
ggGGCCTCGTTTGAAACAGGCTAGGCTCGAGGTAAGAGTATGTACTCGGT
CGAATCGTAAAATATTgtttttcgtttgtttttttaCAGTAAATACAAGT
TGAAGAAGATAGTGAATGTGGAAGAAAACCATGACGTATTACGTGGTGAT
CGTTATCTTATCGAAATAGTAAGTGTTCAACAGTAAGTGTTCAAGGATTG
TTGTTTAGTCTAGCATGCCAGACGATTGGATTTGGAAGAGAGGGTAGTAT
GGTCAAAGGCCCCGGTGAGACGTTTGAAGTGGGGtggtcaaaacttttga
aacatttttcagtttttgcgcCTTGTAAACACCTTAAAACGCTTTTTAGT
TGGATAAAGCAGGATTTGGACTTTTTAGACTGCAAAATATTCGGTTGGTC
ATGCCCCTAGTATTTCATCGCTTCAGATTTCTTTTAGAAATATAAATATA
TCTAGCCTTTCCCACTCTTAATGCTCTTACCACGGTCGATTTTTGCAGGC
TTTTTTCCTGCGAAGAAGAATTtggtaaatttttcttttttttcaggaat
tatCAGTGGAAAATGAAGGTAagtgcattttttattttcctttgaTTGTA
TTAATACACTCAAATCAACATTAGCGTCACTACAGCGTGTCCCAAAAAAG
CGGACGAATTTATATAAAGTAAATTTCTCATTATTTATTTCAACTACGCG
GTTTAGAtataggattttattttatataaagATTTGTCCGCTTATTTCAG
GACACACTGTATAAGGGAATTGATTCGTGTGTACAAGGGTCGATTGATGT
CAACTATATGTATTTTTGAGCATGCCAATTATTGCAATGACTTCAATGAC
CCCCAGCTGAGCTATCGGAGTGCTTATTTCATTTCCATCCAATAGAAGAT
CATTTTTCGAACTGTCATTTAATTATATAATGCAAAGACATTTTAGTTAT
ACGAAATGTCCTTGGTATACACATTTTTGATACGTTTTCTTTGTTATCTT
AGCATCAACAAGACGATTGTCAACCTATATATACCGCGATGCAGTCAAAA
ACAAACTATACCGTCCCAGTGGTTTTGTTTGGAATCCCAAAGCTACTGTC
CACGTAATTGTACCAGGTAAGAGCCATTCACggatttagccaaattttat
actcttttataagaacaaatatataagaacatcaggcttcgatggccaaa
atattaagaaaaattttaaaaacattttaaggcttcgcagactctaaaac
acccaatttcttagaaaattgctgaaaaatactcaaaaatggtgaaagta
agaacgtttttaagaacatttttaggctttaaactcaaaagtTTAAGAGC
atcagaaatcttcaaaaaattagaTATTCTTACAAAAACAAACGTGTACG
CTAATATTTTCTATTTACGCTTTTTTTTGTGTTTCATAACTTTACACTGC
ATTTTTACtggatttttccaaaatttccaaagcTAGTGGCGTCAAGTTAA
TAGAACATAGAAAATAATCAACAAAATATTTGGTACTTACTTTGGCCTTT
TAGTACactttcttttattattttagtCAAGAATCAGGGACGATGGGTAC
AACATTTCATTGATAACATGGAACAGGTATTGATCATtttcattctatca
tttagaaaatcaaaaaaatcgatTATTTAAAAATGTCGAGCTTTCATGAA
CTTTATAAACCCCAGAATGtaccttatcggtagaaaattcgtcgaCAAAC
AGCGAcgaaaaaagtgttttgtgACGAACTTTTTTACCGACGATTGATTT
TTGCCGacgaaaattttttcgaaatagaTGACAAGTGACGAAAGTTTATG
CCAACGAAAATGTTTTGCTGACGAAAATACACCTTTGCCATCtataaaat
tcttttgttttaatatcTGCTTTGTCAGCAGAAGACACACGCCTTGCTTT
GAACATCAACGAACTGTCTTTAATTGGCTTTATCTTTCAGGTCTATCTGG
AAACACAGGATGTGAATTTGAACGTGATAATTGCTGATTTCAACTCCTCT
GATATTGATATCAAGAAAAGTTTCGACAGAAGTCGACTCAAAAGGTGAAA
GTTATTTCCAATAGTGACAGTATGCATAGCGTCAACCCCCTGACATTGGG
GGGGGGCGTTACGCCCAAAAAATAACCCTAATTTAAAATCACGACATCAC
GCAAACTGCTATGGGCCTTACGTTGTTGTAAACACGACTAATAGTCTGTA
TACATGAACTTTTCCCCATCTCAGCTCACATTagtgaaaaattattacag
GGTGATATGGTATCTTGGAGTGATTTGAATTTTGACTGTTTTCAAAtatt
gaccaatcaaaacatCAGAAAGACCAATCGATAAATTAAAATTATGCCCT
TCTGATAACGTATGGTATCTTGGAGTGATTTGAATTTTGACTGTTTACAA
AtattgaccaatcaaaacatCAGAAAGACCAATCGATAAATTAAAATATG
TCCTTTTGATAACGTATGGTCTGTTGGAGTGATTTGAATTTTGACTGTTT
ACAAAtattgaccaatcaaaacatCAGAAAGATCAATCGATAAATTAATA
TATGCCCTTCTGTTAACGTATGATCTCTTGGAGTGATTTGAATTTTGACT
GTTTACAAATATTGACCAATCGAAACATCAGAAAGACCAATCGATAAATT
AAAATTATGCCCTTCTGATAACGTATGGTATCTTGGAGTGATTTGAATTT
TGACTGTTTACAAAtattgaccaatcaaaacatCAGAAAGACCAATCGAT
AAATTAAAATATGTCCTTTTGATAACGTATGGTCTGTTGGAGTGATTTGA
ATTTTGACTGTTTACAAAtattgaccaatcaaaacatCAGAAAGACCAAT
CGATAAATTAAAATATGTCCTTTTGATAACGTATGGTCTGTTGGAGTGAT
TTGAATTTTGACTGTTTACAAAtattgaccaatcaaaacatCAGAAAGAC
CAATCGATAAATTAAAATATGTCCTTCTGATAACGTATGGTCTGTTGGAG
TGATTTTGACTGTTTACAAAtattgaccaatcaaaacatCAGAAAGACCA
ATTAATGAATTAATATGGTGTGCTCTTCTGTTTACGATAAGGATTTTGGT
tgagaaagaaatcaaaaattagTTCAAAGTTATTTATCCGGCATTTGATA
GTGAGTGTGATGCACTTAAACATTTTAACTCTAAtaaccccaagcttttt
tgatttttgtatccggggggggggggggggagaactGAACacccccactt
tttttttttttttttccggggggggggggggttaagaatctaccaccctc
gattactTTTTATCTAGATGAGtaatggccatgaaatttggtacagatgt
tctccatcatgacacaaatttccaggaagaaaaaaaattttgatgacgcc
ATTTTAAaagcgatgacgtcatcacaaaattttcacctgtcgaaaaaaag
ccaaatatatggtttacaaattACAAAAACGTCTATCACGGTCGAACCAA
taagatatttagattctgtttaaagatcagtcattattttcgaatttttt
tgtttaattttcagATTCACATTGTCAATGCCTATCctgtgtcaaaattt
gaaaatgattgaataaatagttatCAGcgctttaaaattttgagttttaa
gcgattttagctgggttttacgTCATGTTTCACAATTAAGTCAggaagtt
tcaagtcgtttaaaactttttctatacacaaaaaaactccagcgtggtag
attctatcCTACCATCTCTtagggctaatagggttaaagtaTTTAAAACG
AAAGAGTGATATTTCACTGTTATTTTTTCCTTGATTTTATGATGTTATTC
TTCTAGGTACAACTTTCTTAACTTGGACGGCCCATTTGAAAGAGCTTTCG
GCTTACAAGCTGGCGCTGATCTTGTGAAGGTATGAACCGTATATGAAGTC
TGTATAGTATTCCTTATTTATGTACAATACCCCTTACACTACACAATATT
TCAGCGGGTTACATAGTCTGAAAAAGGGCAGAGCAAATTACTTCAANCCT
TACACTACACAATATTTCAGGGGGTTGCACAGTctgaaaaagggtaaaat
tAGAGCAAATTACTTCAATTGACAAATTGTCGGATACTGAGGTATTATAA
GCGACCTTTTTCTTGCGGACCCAAGAATTATTGGTCATGACTGCATCTTT
AGGCCAAATTTGCACAAAGtactaaattgaaaatcagCTTTTAAGTGAAT
TTACAGCATATACCACCCCTTAGTACAATTTTGACCACCCACCCGGCAGT
GGTCCCTACAACTTAGTATAGACCCCCTAAATATTTTACTTAAAGCTTTT
AAGAGCAAGTGTAAATGCTTCCAAAATTGTACGAAATTTTGTCGTTACTA
TCAAATTGAGCAATTCCAAAGTTTGATAGTTCAATTTtatcacgtttttt
tttaaaaggatTTTTGCAATTcacagaaataaaaaaaaatccacgTTGCT
TTGCCTGTTCATAAAAGAAATGAAACCTGTAATACAATTTCTTATATCTT
GACAAAAGTTATAATATAAGGTGATTTAAATCACAAATCTTCATGAATCT
TTTTATACTTATCTTTTAGAACGAAGATGATATAATATTCACCTGTGATT
TGCATTTGGACATCCCACCTATTCTCATCGATACCATACGAAAGGTGACC
TTGATTttaattatttcattattttacgCATCTTTTTAGATTAATTATCA
AAAGGACACTCAATTTTCGCCTACAAATTCAGAAACTAATCGGAACAATa
ttcatttagaaatttaaagACCCATTAAAACCCTTACCattatgaatttt
aaaaaaattgtgttaTTCCTGGGAGAACTTATTTTATCCCCGCGGTAAGG
AGGTAAACTTTTTTTACCGCGAAGGGGTGCCTTCAAAAAGCTGGAtaaaa
aataacacaaaaaaTTCGAATGAATGTCTTCGAACTAACGTGTTGCAACT
AACTctaacgaactaactaactaatGTTAAATGGGGTACGTTATATGCTT
ATAACCTTGAGCTCTTTAGAGGATTCTTCTAGCTTTAAGGGttggaaaat
tgaaatttatttccTCGTCTacaccactgacctttatatgccctggacaa
agcttctcaatcccagccaagcaaaatctttgatcggagttttttgaaaa
ttgcactactcgatagcggtgtaaatgcatcgagagcgctaggtctactt
ttcctcgaattcttttgatgatgtagcggcgttagacgttcatttttagc
attgcaatggcttctccttgggtaccaattctaaaaaaactccaatcaaa
gatggcagatattgcttggtccagggttatataaaagTCAGTGGTCTACA
CCTATATTGCTGTGCAACGTCATATTTAATCATTATAACAAGGAAGTAAG
TCTCTGAGTcagcatagtgtcctcccccccctttataaagggggggggga
ttctgattttggcccttttttcaaagtatgggggaaaatgaaaaatttga
aatttgctgggggaaaataaagaggggggaaaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacca
acccaggaggacactatgctGAGGGTGTTGATCAACCCTTCCAGGTGATA
TCTTTCAAAATATTCCACATGTTAGAATATCcatcatatttttttatata
ttcagCATACGATTAAGAAACGATTGAGTTTTGCACCAATGGTCCATCGC
TTAAGCTGTGGCTACACACCAGATCTCCCCTATGGTGAGCTGTCGTTTTA
GAAAGTAACAAATTTATTATTGTTAGTGCTATGACTCAATGGTTAACCTA
TTCTCGATGTTTAAGTGGAGACGGAGGATGTCGAGGAGAGATCTATTTTA
AAGGGCTTTGTACACTCTAGAATATATTGTCAGACAATATATCAACAATA
TACTGGCAATATGCCGGCAATAATGAAAATGTGTCTGCAATATATATTGT
CAGTTTCATTTGCAATATCCCAacaatttttcctatttttccgacatTAG
TAGGACTGGACTGAAAtctgatttttcgattttcccaacccttacaggga
ctgccAGGTTCTGAAAAAGGCACCCTTTAAGGGCGGCACTtacccgtacc
cttcacttgcctaGGTACCCCCGTCCCTGGGTGTAATTTTTATTACTTAA
AGTTCCATGCTGTCCGTATGAACGACAGTCATCAGCCAAATAAAATATGT
TACGATTCCAAATTCAATAAGTAGCCTATGTTTATAAggtttttgataac
ttaaatttgaaaatctacataCATAGATATGGACGACCATTGGATGAAAG
TGAAGCTAATGGAAACAACGATACGCCCATAAAAAGATTccttacatttc
aaaataatttcaaaataaggCCGGTCTGTCTCAATAAAAATGATTTACAA
TCTAGGCTACTTTGATAACCTTCCTTGTTTTTTTACAGGACTATGGGAGA
CAGAAGGTTACGGATTGTTTTCTATCACCAAACATGATTTTGACCGCATT
GGTGGAATGAACACTAaagaattcaaaacaaaatggggCGGAGAGGATTG
GGAATTCCTTGACAGGTAACTATAGCAACCTATTGAATGTCAACTGACAA
GTGATGGAAAACAAGATTATCGTTGTCAATTTGCCTGTCGCGAACAATTC
TTTTTGATCAATGTtgacatatttttttcataaggaaacatctataagaa
cacgaggctcaTTATTTCTTAAAACCTAAGAACTAAGAATGAACTAAGAA
CAACGCCATCCTTAGATTTCAGATCCTGTCGCTGGGCAAAAGTTTTCTCT
GCTCTTTCTTAATTGTTGGGTAAACATTCATTAACGACTTTTAAGAGATA
ACCTTTTCATTccattatcaaaaaaaaaaaaaacgatgaaaattaagtGT
TTGTAGAAAACCGTCATCGAAATGTAATGTAAAAGGACTATATTTTTTTA
TACAGAGCGTTAGGCCATGGACTGGAAGTGGAACGTCTTCGTGTGCCAAA
CTTCTTTCACCACTATCATTCACGTAAGAAAATGTGGCAAGCATCAACAT
CATCCAGCAAGTCTTCTACCATCGTCCCTCAATCAGCTTATTATAATTCT
CGGGATAGCAGCAGCAACACTGTTGTTAAAACTACTTCGACTACACCTAA
TCCATTCCCAGAGTAAGGTACATTTTGCTCTGTTTCCTCTTTAACTAGCC
TACTACGTGCCTCGAGATATAGCACCAGCAACACTGTGGTTAAAATCACC
TCGACCGAATTATTTTCCTTTCTCAATCCCAAAGCCCCATGTTGCGTTAG
GAAAGATTGGTGTATATTTAAACGAATCAATCCTTTGATACATCTTTAGT
AAAAAAGTGTTTATTAACAGAAGCTTCTTGatcattttttctaaaattta
tttgTAGACGTTTCGGCTTCTCAACAGAGAACCATCCTCAGTACAGTAAA
AATTGAGTATATTTCTTGCTTTAAATTCTTGCTGTGCACTCTTTAGTTAT
ACCGATTCTTTTACAACAACCTTATAGAAACATATTTGACAGTAATGCCT
TTTTAGATTTGTGAAGTAGTGATTGATAGTTGGATATCTATTTCACACTT
TAGGTTTCGTATTAGCTAGCAATGAACTTACGTAGTACCTACttatttaa
agccaattttatttAGTCAATCAAGATAACCGAGAAATATATCATATATC
ATTCTTTAAgcatttatttttagaaatattcttaagggctacatacactg
cacaatatattgtcagacaatatattgatgatatattgctgagtgccggc
aatatattgaaatggtgccggcaatatattgaaatggtgtccgcaatata
ttgtcagcttgatttgcaattttccaacaatatagggggattgtttaaaa
aaagatttcctttttataatagagcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031264XLOC_031264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049242-exon-scaffold_154-1491911889:781327..781834TCONS_00049242-exon-scaffold_154-1491911889:781327..781834Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:781327..781834TCONS_00049242-exon-scaffold_154-1510915933:781327..781834Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:781327..781834TCONS_00049242-exon-scaffold_154-1575043694:781327..781834Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:782329..782384TCONS_00049242-exon-scaffold_154-1491911889:782329..782384Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:782329..782384TCONS_00049242-exon-scaffold_154-1510915933:782329..782384Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:782329..782384TCONS_00049242-exon-scaffold_154-1575043694:782329..782384Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:784566..784644TCONS_00049242-exon-scaffold_154-1491911889:784566..784644Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:784566..784644TCONS_00049242-exon-scaffold_154-1510915933:784566..784644Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:784566..784644TCONS_00049242-exon-scaffold_154-1575043694:784566..784644Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:785023..785044TCONS_00049242-exon-scaffold_154-1491911889:785023..785044Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:785023..785044TCONS_00049242-exon-scaffold_154-1510915933:785023..785044Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:785023..785044TCONS_00049242-exon-scaffold_154-1575043694:785023..785044Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:785479..785592TCONS_00049242-exon-scaffold_154-1491911889:785479..785592Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:785479..785592TCONS_00049242-exon-scaffold_154-1510915933:785479..785592Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:785479..785592TCONS_00049242-exon-scaffold_154-1575043694:785479..785592Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:786053..786102TCONS_00049242-exon-scaffold_154-1491911889:786053..786102Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:786053..786102TCONS_00049242-exon-scaffold_154-1510915933:786053..786102Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:786053..786102TCONS_00049242-exon-scaffold_154-1575043694:786053..786102Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:786467..786570TCONS_00049242-exon-scaffold_154-1491911889:786467..786570Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:786467..786570TCONS_00049242-exon-scaffold_154-1510915933:786467..786570Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:786467..786570TCONS_00049242-exon-scaffold_154-1575043694:786467..786570Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:788383..788455TCONS_00049242-exon-scaffold_154-1491911889:788383..788455Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:788383..788455TCONS_00049242-exon-scaffold_154-1510915933:788383..788455Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:788383..788455TCONS_00049242-exon-scaffold_154-1575043694:788383..788455Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:789146..789220TCONS_00049242-exon-scaffold_154-1491911889:789146..789220Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:789146..789220TCONS_00049242-exon-scaffold_154-1510915933:789146..789220Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:789146..789220TCONS_00049242-exon-scaffold_154-1575043694:789146..789220Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:790682..790760TCONS_00049242-exon-scaffold_154-1491911889:790682..790760Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:790682..790760TCONS_00049242-exon-scaffold_154-1510915933:790682..790760Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:790682..790760TCONS_00049242-exon-scaffold_154-1575043694:790682..790760Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:791465..791591TCONS_00049242-exon-scaffold_154-1491911889:791465..791591Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:791465..791591TCONS_00049242-exon-scaffold_154-1510915933:791465..791591Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:791465..791591TCONS_00049242-exon-scaffold_154-1575043694:791465..791591Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1491911889:791982..792953TCONS_00049242-exon-scaffold_154-1491911889:791982..792953Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1510915933:791982..792953TCONS_00049242-exon-scaffold_154-1510915933:791982..792953Clytia hemisphaericaexon
TCONS_00049242-exon-scaffold_154-1575043694:791982..792953TCONS_00049242-exon-scaffold_154-1575043694:791982..792953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:781327..792953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25504	1.50634	0.741453	0.594035	8.85583	7.39708	6.2717	9.32955	5.0269	5.74116	4.28136	6.33559	3.03571	5.07185	3.704	5.4062	4.57953	4.45684	2.13216	2.59552	3.39456	3.23221	2.46702	4.80354	3.31023	3.68412	2.02427	1.65236	4.99179	5.14064
Blast
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BLAST of TCONS_00049242 vs. Swiss-Prot (Human)
Match: B4GN4 (N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1 OS=Homo sapiens GN=B4GALNT4 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.069e-87
Identity = 147/324 (45.37%), Postives = 199/324 (61.42%), Query Frame = 2 
Query:  470 KCRTEGNLPLFSGVAVGVVNEYMXXXXXXXXXXXXXXXIVNVEENHDVLRGDRYLIEIELSVENEASTRRLSTYIY------------------------RDAVKNKLYRPSGFVWNPKATVHVIVPVKNQGRWVQHFIDNMEQVYLETQDVNLNVIIADFNSSDIDIKKSFDRSRLKRYNFLNLDGPFERAFGLQAGADLVKNEDDIIFTCDLHLDIPPILIDTIRKHTIKKRLSFAPMVHRLSCGYTPDLPYGLWETEGYGLFSITKHDFDRIGGMNTKEFKTKWGGEDWEFLDRALGHGLEVERLRVPNFFHHYHSRKKMW 1369
            +C   GNL L    AV V  +YM+ +  +H  ++ L +IVNVE+  D  RG R+L+E+EL  E      RLS Y++                        R   + +L RP    W     VH IVPVKNQ RWV  F+ +M  ++  T D   +V++ DF S D+D++++   +RL RY +L   G FER+ GLQAG D V++   I+F CDLH+  PP ++D IRKH ++ RL+FAP+V RLSCG +P  P+G WE  G+GLF I K DFDR+GGMNT+EF+ +WGGEDWE LDR L  GLEVERLR+ NF+HHYHS++ MW
Sbjct:  704 RCNVSGNLQLPEAEAVDVTAQYMERLNARHGGRFALLRIVNVEKRRDSARGSRFLLELELQ-ERGGGRLRLSEYVFLRLPGARVGDADGESPEPAPAASVRPDGRPELCRPLRLAWRQDVMVHFIVPVKNQARWVAQFLADMAALHARTGDSRFSVVLVDFESEDMDVERALRAARLPRYQYLRRTGNFERSAGLQAGVDAVEDASSIVFLCDLHIHFPPNILDGIRKHCVEGRLAFAPVVMRLSCGSSPRDPHGYWEVNGFGLFGIYKSDFDRVGGMNTEEFRDQWGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSKRGMW 1026
The following BLAST results are available for this feature:
BLAST of TCONS_00049242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN41.069e-8745.37N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-a... [more]
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