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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049271 ID=TCONS_00049271|Name=TCONS_00049271|organism=Clytia hemisphaerica|type=transcript|length=4518bpRun BLAST on NCBI protein sequence of TCONS_00049271-protein >TCONS_00049271-protein ID=TCONS_00049271-protein|Name=TCONS_00049271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=729bp MMLNHVILVWILLILAMFTLVMSSQTKGNCKDKIITSQLHGQFSSPKYPKRun BLAST on NCBI transcript from alignment at scaffold_154:368300..486083- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049271 ID=TCONS_00049271|Name=TCONS_00049271|organism=Clytia hemisphaerica|type=transcript|length=117784bp|location=Sequence derived from alignment at scaffold_154:368300..486083- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:368300..486083- >TCONS_00049271 ID=TCONS_00049271|Name=TCONS_00049271|organism=Clytia hemisphaerica|type=CDS|length=26280bp|location=Sequence derived from alignment at scaffold_154:368300..486083- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049271 vs. Swiss-Prot (Human)
Match: MASP1 (Mannan-binding lectin serine protease 1 OS=Homo sapiens GN=MASP1 PE=1 SV=3) HSP 1 Score: 324.709 bits (831), Expect = 3.609e-95 Identity = 215/737 (29.17%), Postives = 346/737 (46.95%), Query Frame = 1
Query: 736 LVWILLILAM-FTLVMSSQTKGNCKDKIITSQLHGQFSSPKYPKAYPNNCQCKWNISVPLGYHLMLNFTQFELEWGEKCEYDYVTVKSKNGTFGKFCGQRNEIKSLAAPRDPLFIYDSNIQVNFHTDFSNEVEVHGFEAHFAAIDMDECLFNNG---GCNHFCHNFIGGYYCSCKIGYQLGPDKKTCIVKCSGIHLDQMRGIIKSPEYPLDYPPEADCDWSIHTTNGYYINLQFID-FHIEDHHDSLCPFDKLEIQDEHSKKGPFCGKQPPAPYRSMSNWLIVEFKSDNSQQAKGFQAKYWLEPKKCTELIPPEFGVMTGSK-NFTFKETLRFTCEPGFEYIDGTAER-----TCQADGTWTGKTGRCNQIICPFPRNRNYKTTIASNSNIIHHVNVTVKVIC-SLFYERIGSDTMV--CQRNRTWSN-----TDTYCLKTCGMAFRRHPTIEKCSAGKHRTITRKNSQPWMVAIVEKKPGSSPKIICSGVLINQEWFITVANCVAFTKERHG---------QKGYLEIILGNFEWDKPHQETAXXXXXXXXXXXXYDYG-LHSDIVLVQ-MDRPVKTDFIYVQPVCLPFGKKYRHIFNNVTNVATIGW----YSNGDRHLTDRCVKVVDQATCQKYVQATHSNIQRDVWGSSNGRKHIVPTELMCTEATVGTNDRCKILAGSALVTFDPNKRKWYLGGILSWGHKDLNTCKKHMTSYDMFTKIDKHIKWIRMVTKV 2844
+ W+LL A+ F+L +S + + + GQ SP YP +YP++ + WNI+VP G+ + L F F LE CEYDYV V++++ FCG+ ++ + S + + F +DFSNE GF+AH+ A+D+DEC C+H+CHN+IGGYYCSC+ GY L D +TC V+CS Q G+I SP++P YP ++C ++I G+ +NLQF D F IEDH + CP+D ++I+ GPFCG++ P P + S+ +++ F SDNS + +G++ Y +C EL PP G + S+ + FK+ + +C+ G++ + E C DGTW+ K C + C P + S N + +K C +Y+ + ++T + C W N + CL CG+ + + G+ +K + PW +A++ G + C G L+ W +T A+C+ + + +IILG + + +K +YD +D+ LV+ ++ PV F V P+CLP G + V GW L + + +VD +TCQK + RD ++C G D C +G +VT + + +WYL G +SWG + C K Y +++ I + WI+ VT V
Sbjct: 1 MRWLLLYYALCFSLSKAS------AHTVELNNMFGQIQSPGYPDSYPSDSEVTWNITVPDGFRIKLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGSFMSITFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSDNLFTQRTGVITSPDFPNPYPKSSECLYTIELEEGFMVNLQFEDIFDIEDHPEVPCPYDYIKIKVGPKVLGPFCGEKAPEPISTQSHSVLILFHSDNSGENRGWRLSYRAAGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTCLPVCGLPKFSRKLMARIFNGRP---AQKGTTPW-IAMLSHLNG---QPFCGGSLLGSSWIVTAAHCLHQSLDPEDPTLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAF--VMPICLPEGPQQEGAM-----VIVSGWGKQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRD---------------MICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWG----DDCGKK-DRYGVYSYIHHNKDWIQRVTGV 697 The following BLAST results are available for this feature:
BLAST of TCONS_00049271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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