TCONS_00049731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049731
Unique NameTCONS_00049731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049731 ID=TCONS_00049731|Name=TCONS_00049731|organism=Clytia hemisphaerica|type=transcript|length=745bp
CATTGATGAAAATTGCCCCCattttattatatatatagAAATGACTGCGT
TAAAatcgttttaattttttttctttatatttcagTATCAttaaaactta
aagaaacaaaaaataaataaacaattcAAGATGTGGACACCAGAGTTAGA
AGTCAACTTATTCCATGCACTAAAAGGTCACAAACCAACTGGTATCAACC
GTTATTTCCATATGGCTTGCATCCATAACAAAATGCAAAATGCCACTTGT
GATTCAAAAGATTTACAACCAAAAGATATTTGGACACATTTAACAAACAT
GTATAATATTGAAACATTAAATGAACTTGATGAACTTCCTTTCCCTAATA
ATACAACTGATTTTAATTTGCCTGAAGAAATGACAAATCCAGAATTTATG
TCAAACCCATCATCCCCAGCTACCTCAATAGCTTCAAACGAAGATGCTCC
TTTATCAAGACCCAGTAATTTGACCTTATCGAACCTGAAAACAAGCTCTT
TGGCTTCTTCGACACCTGAAAGCTTAGCTTCTCCTAAACGTAAACGCACT
GCTAGAACCGCTCAACTGTCATCAAGCAGCTCTCAACCTAACTCACCAGC
AACACCTGGCAGTGctacaaaaagaagaagataGTTTATGATGGTTAATT
ACGGATGATGGATGATGAATGATTGATACAAAATTTGGTAGCTCAAATTA
TATACAGGGTGTTCCGATAAAAAGTTCTGTGTCAAACCAGGTCAA
Run BLAST on NCBI

protein sequence of TCONS_00049731-protein

>TCONS_00049731-protein ID=TCONS_00049731-protein|Name=TCONS_00049731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
MWTPELEVNLFHALKGHKPTGINRYFHMACIHNKMQNATCDSKDLQPKDI
WTHLTNMYNIETLNELDELPFPNNTTDFNLPEEMTNPEFMSNPSSPATSI
ASNEDAPLSRPSNLTLSNLKTSSLASSTPESLASPKRKRTARTAQLSSSS
SQPNSPATPGSATKRRR
Run BLAST on NCBI

transcript from alignment at scaffold_165:312979..313723

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049731 ID=TCONS_00049731|Name=TCONS_00049731|organism=Clytia hemisphaerica|type=transcript|length=745bp|location=Sequence derived from alignment at scaffold_165:312979..313723 (Clytia hemisphaerica)
TTGACCTGGTTTGACACAGAACTTTTTATCGGAACACCCTGTATATAATT
TGAGCTACCAAATTTTGTATCAATCATTCATCATCCATCATCCGTAATTA
ACCATCATAAACtatcttcttctttttgtagCACTGCCAGGTGTTGCTGG
TGAGTTAGGTTGAGAGCTGCTTGATGACAGTTGAGCGGTTCTAGCAGTGC
GTTTACGTTTAGGAGAAGCTAAGCTTTCAGGTGTCGAAGAAGCCAAAGAG
CTTGTTTTCAGGTTCGATAAGGTCAAATTACTGGGTCTTGATAAAGGAGC
ATCTTCGTTTGAAGCTATTGAGGTAGCTGGGGATGATGGGTTTGACATAA
ATTCTGGATTTGTCATTTCTTCAGGCAAATTAAAATCAGTTGTATTATTA
GGGAAAGGAAGTTCATCAAGTTCATTTAATGTTTCAATATTATACATGTT
TGTTAAATGTGTCCAAATATCTTTTGGTTGTAAATCTTTTGAATCACAAG
TGGCATTTTGCATTTTGTTATGGATGCAAGCCATATGGAAATAACGGTTG
ATACCAGTTGGTTTGTGACCTTTTAGTGCATGGAATAAGTTGACTTCTAA
CTCTGGTGTCCACATCTTgaattgtttatttattttttgtttctttaagt
tttaaTGATActgaaatataaagaaaaaaaattaaaacgatTTTAACGCA
GTCATTTctatatatataataaaatGGGGGCAATTTTCATCAATG

Coding sequence (CDS) from alignment at scaffold_165:312979..313723

>TCONS_00049731 ID=TCONS_00049731|Name=TCONS_00049731|organism=Clytia hemisphaerica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_165:312979..313723 (Clytia hemisphaerica)
CtatcttcttctttttgtagCACTGCCAGGTGTTGCTGGTGAGTTAGGTT
GAGAGCTGCTTGATGACAGTTGAGCGGTTCTAGCAGTGCGTTTACGTTTA
GGAGAAGCTAAGCTTTCAGGTGTCGAAGAAGCCAAAGAGCTTGTTTTCAG
GTTCGATAAGGTCAAATTACTGGGTCTTGATAAAGGAGCATCTTCGTTTG
AAGCTATTGAGGTAGCTGGGGATGATGGGTTTGACATAAATTCTGGATTT
GTCATTTCTTCAGGCAAATTAAAATCAGTTGTATTATTAGGGAAAGGAAG
TTCATCAAGTTCATTTAATGTTTCAATATTATACATGTTTGTTAAATGTG
TCCAAATATCTTTTGGTTGTAAATCTTTTGAATCACAAGTGGCATTTTGC
ATTTTGTTATGGATGCAAGCCATATGGAAATAACGGTTGATACCAGTTGG
TTTGTGACCTTTTAGTGCATGGAATAAGTTGACTTCTAACTCTGGTGTCC
ACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031536XLOC_031536Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049731-proteinTCONS_00049731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049731-exon-scaffold_165-1491911889:312979..313723TCONS_00049731-exon-scaffold_165-1491911889:312979..313723Clytia hemisphaericaexon
TCONS_00049731-exon-scaffold_165-1510915933:312979..313723TCONS_00049731-exon-scaffold_165-1510915933:312979..313723Clytia hemisphaericaexon
TCONS_00049731-exon-scaffold_165-1575043694:312979..313723TCONS_00049731-exon-scaffold_165-1575043694:312979..313723Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_165supercontigscaffold_165:312979..313723 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.2451	11.6827	10.1174	12.5378	44.6303	31.1765	28.2524	30.7515	23.6494	21.2793	20.1848	16.4867	14.9671	14.3091	14.5829	13.6733	17.0928	20.4735	8.65443	12.664	21.8867	21.8193	28.6872	31.4625	40.9335	34.1855	14.703	11.4296	19.4684	18.1136
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012423Eaf7/MRGBP
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0043189H4/H2A histone acetyltransferase complex
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0043189 H4/H2A histone acetyltransferase complex
cellular_component GO:0005634 nucleus
Blast
[Close]
BLAST of TCONS_00049731 vs. Swiss-Prot (Human)
Match: MRGBP (MRG/MORF4L-binding protein OS=Homo sapiens GN=MRGBP PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.336e-23
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 2 
Query:  131 MWTPELEVNLFHALKGHKPTGINRYFHMACIHNKM-QNATCDSKDLQPKDIWTHLTNMYNIETLNELDELPFPNNTTDFNLPEEM 382
            +W+PE+EV LFHA+ GHKP G+NR+FHM CI +K  QN     + +  K IW HL+ MY+++ L+E + LPFPN   +F LPEE+
Sbjct:   30 VWSPEVEVCLFHAMLGHKPVGVNRHFHMICIRDKFSQNI---GRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEI 111
The following BLAST results are available for this feature:
BLAST of TCONS_00049731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRGBP1.336e-2350.59MRG/MORF4L-binding protein OS=Homo sapiens GN=MRGB... [more]
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