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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049824 ID=TCONS_00049824|Name=TCONS_00049824|organism=Clytia hemisphaerica|type=transcript|length=1497bp
AAAACAACAAGGCAaactattttctaaaaatttggaTACACTTTCGTTGT
TATAATGCAGTTCCACCTGTCAAGGTTAGGGATCAGTAAGACAATGGGAT
AAGCAGGAAAAACAGTGAGAGAGTATATGAAATTCTAAACATAACAATTA
AAATTAAACACTATTACATGTATATtgttttatatataaaaaagaagGTA
TTTTCTTAGAGATTGGCTTTAGAATTTCCAGAAAATAAATCCAACAGCTT
GAACACAAAATATAATAGGAATTTGAGATAATAGAAGAAACTAAACTGAT
AAAACCTTTCAACTTGAtgcaaatttatcaaatttcaattattttaaaga
GAGATTCTAGCTATAATATTCCAAATAAAATATACAAGTATATGTGAATA
AAAAAGTATGTTATACCTGCATCTAACTGatgtacaaaaacaaaaaaggg
ggTGAAGCTTTTCCTGAAACAACATTTAGCCCATACAGCAAGCCATAGCA
CATTAAGAAACGTCTTATAATTTATACGAGTAAaccaatttttaaatttg
gacTTCCTTGCAATCTAagaccatttaaaaaaaatgtgacAGCAGTTCTT
TATTAAGCAATACAATATTCACACAATCTCATTGGCAACAATCAGGgtca
atgaaaaacatttaaagctagagaatgaaagaaagaaattctAAAATAAA
TTACATACAAAAAGATACAATTAGAATTACTAAAAACTACAATAAAGCTA
TAAGCATAttgtttttttacaatttagtttGAGTAGCTTAAAGTTGCTAA
AGAAAAgatgtaacttttttatttagtcATGAATCATTCCCAATAAAACG
TCTCTGGTACTTCCCATTTTCTCATTCAAACCATTCAAAGATCTGATTGG
ATAACAACTACATCCATTTAAAATCCAAATCCAAGTAAAACAATACAAAA
TGAGCccacaatttcataaaatttcaatttcgataACCCTCAAGCCTCTT
TCCATTGGACTAACAATTGCCAATCCTTTAGGATTGTACAATGATTCATT
TTGTTCGTGAATAAATTGCCCTAACTTTTTCATACATTTTTCATAGTGTG
TATCAAcacaaaaatataacaaatagCCTGTTAAACAGGCACAACAACCC
CTACATAAAGAAGCTCCATCAGTTTTTTCTgcttcagtgaaaaattgatt
tattttttggactGTCTGTTCAAATGATGACCTTGAGATTCTACCCTCCA
ATTCCAAAgggaatttcttttgaaattgaacTGCTGTTCCTTCAGAATAA
TCCCGTTGCACAAAAACTTTGTTTATTCTATTANTGCTGTTCCTTCAGAA
TAATCCCGCTGCACAAAAACTTTGTTTATTCTATTACTATTTGCATGAGC
CATTTCTCCTCTGAACAAATGTTTAGAGGACTGTCAACATCTATTGAAAA
CCATTAATTCAAAAACcaagaaatttaaaactttaatgTAATTTATA Run BLAST on NCBI transcript from alignment at scaffold_166:650769..652337- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049824 ID=TCONS_00049824|Name=TCONS_00049824|organism=Clytia hemisphaerica|type=transcript|length=1569bp|location=Sequence derived from alignment at scaffold_166:650769..652337- (Clytia hemisphaerica)
AAAACAACAAGGCAAACTATTTTCTAAAAATTTGGATACACTTTCGTTGT
TATAATGCAGTTCCACCTGTCAAGGTTAGGGATCAGTAAGACAATGGGAT
AAGCAGGAAAAACAGTGAGAGAGTATATGAAATTCTAAACATAACAATTA
AAATTAAACACTATTACATGTATATTGTTTTATATATAAAAAAGAAGGTA
TTTTCTTAGAGATTGGCTTTAGAATTTCCAGAAAATAAATCCAACAGCTT
GAACACAAAATATAATAGGAATTTGAGATAATAGAAGAAACTAAACTGAT
AAAACCTTTCAACTTGATGCAAATTTATCAAATTTCAATTATTTTAAAGA
GAGATTCTAGCTATAATATTCCAAATAAAATATACAAGTATATGTGAATA
AAAAAGTATGTTATACCTGCATCTAACTGATGTACAAAAACAAAAAAGGG
GGTGAAGCTTTTCCTGAAACAACATTTAGCCCATACAGCAAGCCATAGCA
CATTAAGAACCNAAAAAAGGGGGGTGAAGCTTTTCCAGAAACAACATTTA
GCCCATACAGCAAGCCATAGCACATTAAGAAACGTCTTATAATTTATACG
AGTAAACCAATTTTTAAATTTGGACTTCCTTGCAATCTAAGACCATTTAA
AAAAAATGTGACAGCAGTTCTTTATTAAGCAATACAATATTCACACAATC
TCATTGGCAACAATCAGGGTCAATGAAAAACATTTAAAGCTAGAGAATGA
AAGAAAGAAATTCTAAAATAAATTACATACAAAAAGATACAATTAGAATT
ACTAAAAACTACAATAAAGCTATAAGCATATTGTTTTTTTACAATTTAGT
TTGAGTAGCTTAAAGTTGCTAAAGAAAAGATGTAACTTTTTTATTTAGTC
ATGAATCATTCCCAATAAAACGTCTCTGGTACTTCCCATTTTCTCATTCA
AACCATTCAAAGATCTGATTGGATAACAACTACATCCATTTAAAATCCAA
ATCCAAGTAAAACAATACAAAATGAGCCCACAATTTCATAAAATTTCAAT
TTCGATAACCCTCAAGCCTCTTTCCATTGGACTAACAATTGCCAATCCTT
TAGGATTGTACAATGATTCATTTTGTTCGTGAATAAATTGCCCTAACTTT
TTCATACATTTTTCATAGTGTGTATCAACACAAAAATATAACAAATAGCC
TGTTAAACAGGCACAACAACCCCTACATAAAGAAGCTCCATCAGTTTTTT
CTGCTTCAGTGAAAAATTGATTTATTTTTTGGACTGTCTGTTCAAATGAT
GACCTTGAGATTCTACCCTCCAATTCCAAAGGGAATTTCTTTTGAAATTG
AACTGCTGTTCCTTCAGAATAATCCCGTTGCACAAAAACTTTGTTTATTC
TATTANTGCTGTTCCTTCAGAATAATCCCGCTGCACAAAAACTTTGTTTA
TTCTATTACTATTTGCATGAGCCATTTCTCCTCTGAACAAATGTTTAGAG
GACTGTCAACATCTATTGAAAACCATTAATTCAAAAACCAAGAAATTTAA
AACTTTAATGTAATTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049824-exon-scaffold_166-1575043694:651837..652337 | TCONS_00049824-exon-scaffold_166-1575043694:651837..652337 | Clytia hemisphaerica | exon |
| TCONS_00049824-exon-scaffold_166-1575043694:650769..651764 | TCONS_00049824-exon-scaffold_166-1575043694:650769..651764 | Clytia hemisphaerica | exon |
| TCONS_00049824-exon-scaffold_166-1510915933:651837..652337 | TCONS_00049824-exon-scaffold_166-1510915933:651837..652337 | Clytia hemisphaerica | exon |
| TCONS_00049824-exon-scaffold_166-1510915933:650769..651764 | TCONS_00049824-exon-scaffold_166-1510915933:650769..651764 | Clytia hemisphaerica | exon |
| TCONS_00049824-exon-scaffold_166-1491911889:651837..652337 | TCONS_00049824-exon-scaffold_166-1491911889:651837..652337 | Clytia hemisphaerica | exon |
| TCONS_00049824-exon-scaffold_166-1491911889:650769..651764 | TCONS_00049824-exon-scaffold_166-1491911889:650769..651764 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_166 | supercontig | scaffold_166:650769..652337 - |
Blast
BLAST of TCONS_00049824 vs. Swiss-Prot (Human)
Match: GOGA7 (Golgin subfamily A member 7 OS=Homo sapiens GN=GOLGA7 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 3.408e-43 Identity = 69/123 (56.10%), Postives = 88/123 (71.54%), Query Frame = -1
Query: 952 KVFVQRDYSEGTAVQFQKKFPLELEGRISRSSFEQTVQKINQFFTEAEKTDGASLCRGCCACLTGYLLYFCVDTHYEKCMKKLGQFIHEQNESLYNPKGLAIVSPMERGLRVIEIEIL*NCGL 1320
KVF+QRDYS GT QFQ KFP ELE RI R FE+TV+ +N + EAEK G S GC ACLT Y ++ C++THYEK +KK+ ++I EQNE +Y P+GL + P+ERGLRVIEI I + G+
Sbjct: 11 KVFIQRDYSSGTRCQFQTKFPAELENRIDRQQFEETVRTLNNLYAEAEKLGGQSYLEGCLACLTAYTIFLCMETHYEKVLKKVSKYIQEQNEKIYAPQGLLLTDPIERGLRVIEITIYEDRGM 133
The following BLAST results are available for this feature:
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