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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049895 ID=TCONS_00049895|Name=TCONS_00049895|organism=Clytia hemisphaerica|type=transcript|length=2327bp taaaaataaaaatgaaaaatcatttgACTGTGAATATTGGCAACAATCCT CCCTCCATATTTTACTGGTGTGATGCAGATTCATATGacaatttgaagaa aagtattgaaaaaCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAAC ATCAAGGAATTATTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAA CGATTGCAGTTTGATATTAAACTTGATGTTATTATTGATGATAGTACTGG TAACTTGATTGATTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGG AAAAAAGTTCAGGAATAAGGAATATAAAAATTATTGATTTATCTAGACAC TTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGATATCAATACAAC GGTACTAGATCTGAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaat CGACTAAcagaataaattttatttatgGTAAACTTATGATTCTCACAGAC AATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCA ATTCTCTTTCAATATCGTAGTTATCACAGTGGATGATTGTATATTCGATA TGTTTGAGAATGATGATGAAAATACTACAATCAATATCAAATTCcgtgaa atcaaaatttcaatgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCC AATATTCGATATAGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCA AAGACATGTATCAGATTCCTATTGAAGAACAGACTTTTGGATATTGTGAC GGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCG ATCTTATCAACTAGAAAATGTGGAGCTTCAGCTATACGTTCATTACACTG ACAAAACTGAGTTAAAGGAAATTTATGGTCAGAACGATACAAAAATGATG GAACCTTCAAAAATTGTTAGtggaaacaagaaaaatatttggtATTATTA TTATAGAGGGAACAATGGACCATCTCTTAATGATTTTCTTCATGAAACCT TTAGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCAAAAT CGTGTCAAATATTCAcaaattgacatttttagaTGTAAAAAAATCAGACT AGCAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAAC CATTAGGTTTATCTAGAGTCGGTTCAATTATTATTAAATGCCCTAATACC GGTTCAACGTTCTGTAGTATACCTTTATCGCAATGGGAATTTTTTGTTAA TCCTGAAGATGTGTGCAATGAGATTATTAAAAAACATCGAGAATTTTTCT ATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACC ATCATAGAAAGCTTATTCataagagaaaatgaaattttcgaaaacGTCGA CGTAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAA TGCATCATTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGT CAATTTACAATAGATTTGTTTCAGCAAGAAACTCTGTTAACTGTTGGAGA TCTCAAAAGAACAATCTATGAAATAAAAGACATTGCACCACATTTGCAAT CACTGTTTTGTTACAAATTTAATGATTTTCAGTTAGAAGGTTTCATGgaa atattttcactttcaaCGGTTGTCAAAGAAAATGATTCGATTACTCTTAA CTTGATTGTCAAACCAGCAAAAGAATTACAAGTAGTTATCAAATGTGCTG GACATCTTCTCAGTGAAACTATCGATTTAAATATGAAGGAAACAGATACG ATATCAGATATTAAGAAGGAAATATCAAAAATTACCAATCATCCGTCTTC CATTATATCAATCCTAAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGA ATATAGTTGGATTTGATGACAATGACCAACTTTggaatctgaaattttca gaaaccATTTCAATTAAATTATATGCAATGTTGCAGGTATTGGTTTCGAT TAAAGCTACTGATTTAACCATCCACCAACGTTCATTTCGAATTACCAACT TCAAATCCAATAGAATCAGAAACATTGCTCAAGCcttagaaaaagagaaa aatctttttggatCTACTCCAAAGCTTGTTACAAAACCAGGCATCACCCT GGAAACAAAGTTAATAGATATTGGTGAAGAATTAATTGAATTTGTTTCGC AACCTTCTTCCACCAAATGTTTATTGtcataaaataatatttgtgtATCT TAAAGAGAAGTCATTTTAACAGTAAAg Run BLAST on NCBI transcript from alignment at scaffold_167:420183..427771+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049895 ID=TCONS_00049895|Name=TCONS_00049895|organism=Clytia hemisphaerica|type=transcript|length=7589bp|location=Sequence derived from alignment at scaffold_167:420183..427771+ (Clytia hemisphaerica) taaaaataaaaatgaaaaatcatttgACTGTGAATATTGGCAACAATCCT
CCCTCCATATTTTACTGGTGTGATGCAGATTCATATGacaatttgaagaa
aagtattgaaaaaCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAAC
ATCAAGGAATTATTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAA
CGATTGCAGTTTGATATTAAACTTGATGTTATTATTGATGATAGTACTGG
TAACTTGATTGATTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGG
AAAAAAGTTCAGGAATAAGGAATATAAAAATTATTGATTTATCTAGACAC
TTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGATATCAATACAAC
GGTACTAGATCTGAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaat
CGACTAAcagaataaattttatttatgGTAAACTTATGATTCTCACAGAC
AATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCA
ATTCTCTTTCAATATCGTAGTTATCACAGTGGATGATTGTATATTCGATA
TGTTTGAGAATGATGATGAAAATACTACAATCAATATCAAATTCcgtgaa
atcaaaatttcaatgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCC
AATATTCGATATAGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCA
AAGACATGTATCAGATTCCTATTGAAGAACAGACTTTTGGATATTGTGAC
GGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCG
ATCTTATCAACTAGAAAATGTGGAGCTTCAGCTATACGTTCATTACACTG
ACAAAACTGAGTTAAAGGAAATTTATGGTCAGAACGATACAAAAATGATG
GAACCTTCAAAAATTGTTAGtggaaacaagaaaaatatttggtATTATTA
TTATAGAGGGAACAATGGACCATCTCTTAATGATTTTCTTCATGAAACCT
TTAGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCCAAAT
CCTGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCAATTT
AGCAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAAC
CATTAGGTTTATCTAGAGTCGGTTCGATTATTATCAAATGCCCTAATACC
GGTTCAGTTTTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGA
TCTTGAAGATGTGTGCAATGAGattattaaaaaacatcaaaaacttttCT
ATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACC
ATCATAGAAAGCTTATTCataagagaaaatgaaattttcgaaaacGTCGA
CGTAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAA
TGCATCATTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGT
CAATTTACAATAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGA
TCTCAAAAGAACAATCTATGAAATAAAAGACATTGCACCACATTTGCAAT
CACTGTTTTGTTACAAATTTAGTGATTTTGAGTTAGAAGGTtttatggaa
atattttcacttttaacAGTTGTCAAAGAAAATGATTCGATTACTCTAAA
CTTGATTGTCAAACCAGCAAAAGAATTACAAGTAGCTATCAAACTTGCTG
GACATCTTCACAGTGAAACTATCAATTTANCAAATCCTGTCAAACATTCA
CAAATTGACCTTTTTAGATGTAAAGAAATCAATTTAGCAATTCAAGTAGA
TGATGATGAAACAGACTTATTGAAACACCTTGAACCATTAGGTTTATCTA
GAGTCGGTTCGATTATTATCAAATGCCCTAATACCGGTTCAGTTTTCTGT
AGTATACCCTTATCGCAATGGAAATTTTTTGTCGATCTTGAAGATGTGTG
CAATGAGATTAttaaaaaccatcaaaaacttttctttacaaaaatttGGC
TTGCTCATGATGGTAACAAGTTAGACAAAGATACCATCATAGAAAGCTTA
TTCATTAGAGAAAATGAAATTTTCGAAAACGTCGACTTAACCTTGTTCGT
CCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTAT
ACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGAT
TTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAGAACAAT
CTATGAAATAAAAGACATTGCACAACATTTGCAATCACTGTTTTGTTACA
AATTTAGTGATTTTGAGTTAGAAGGTTTTATGGAAATATTTTCACTTTCA
ACAGTTGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAACC
AGCAAAAGAATTACAAGTAGCTATCAAACTTGCTGGACATCTTCACAGTG
AAACTATCGATTTAAATATGAAGGAAACCGATACGATATCAGATATTAAG
AAGGAAGTATCAAAAATTACCAATCATCCATCTTCCATTATATCAATCCT
AAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAATATAGTTGGATTTG
ATGACAATGACCAACTTTGGAATCTGaagctttcagaaaacaattcaaTT
GAATTTTTTGCATTCTTGCAGGTATTGGTTTCAATTAAAGCTACTAATTC
AGCCATCCACCAACGTTCATTTCGAATTACCAACTTCAAATCCAATAAAA
TCAGAAACATTACCCAAGTcttagaaaaagagaaaaagctTTTCGGATCT
ACTCCAAAGCTTGTTGAAAAACCAGGCATCACCCTGGAAACGAAGTTAAT
AGATATTGGTGAAGAATTAATTGAATTTGTTTCGCAATCTTCTTCCACCA
AATGTTTATTgtcatgaaaataatatttatatTCCAAAAGCTCTTTCAAT
ACATTTGCgagtttctaaatttttaaatcaCTGGTAATGTTAATGCTATT
AAACCATTTGAATCTTAACTTTTCTCTTTCTACGGCTTTGGCTCCTATCA
GAATCTTAATCAATATTAGTATAAATATCATTTTGAATCAACATCTGCAA
ATTATTAATTTTAATGATCCAGTGTGTCACCataaaaacgaacaaattta
ttttataaagTAACCTCCTCAAAACTCATTATCTTAACTTTTTAATTGCA
GTAAACATTcaagaagaaatatttaaaatgagtAATAACAATTTTTCACA
CAAGAACATTATTAATAACACTACCTATCATCAAGTATGTTTCAATTGTc
aaaaaaacctgatttttgaagccagaaCTTTCTTAAAATTGCCGGAACCA
TGGCTttgcagcaggttttaggtgacccctaagatttaggtaacccctgg
ttgccaaatattttaggtgacccctaatcCAATGACATNCACATTTCTGA
GAATAAAATTCCAAAAGCTCTTTCAATACATTTGCGAGTTTCTAGATTTT
TAAAACACTGGTAATGTTAATGCTATTAAACCATTTGTATCTTAACTTTT
CTCTTTCTACGGCTTTGGCTCCTNgtcaaattttttcgaaaatccttttt
aaacaatcaaataaatacaacagttagtttagcttattgctgAATAAaat
aaatgccctaagaaatAAGTAAATGACACAGGATTAAAGAACttttacag
atcagtgccgtaggaagcattttcatattagtGTTGGGCTGAAGTTTTGT
GACAcagcgagggccaaccatggtttggcNAAATGACACAGGATTAAAGA
ACttttacagatcagtgccgtaggaagcattttcatattagtGTTGGGCT
GAAGTTTCGTGACAcagcgagggccaaccatggtttggtNTAATTTTAAT
GATCCAGTGTGTCACCataaaaacgaacaaatttattttataaagTAACC
TCCTCAAAACTCATTATCTTAACTTTTTAATTCCAGTAAACATTCAAGAA
GAAATGTTTACAATGAGTAATAACAATTTTTCCACACAATAACATTATTA
ATAACACTACCTATCATCAAGTATGTTTCAATTGTcaaaaaaacctgatt
tttgaagccagNgtcaaattttttcgaaaatcctttttaaacaatcaaat
aaatacaacagttagtttagcttattgctgAATAAaataaatgccctaag
aaatAAGTAAATGACACAGGATTAAAGAACTTTTACAGATCAGTGCACTG
AAGATAATACAttagataccaaattgtcagtttttgagcattgcttagat
taaaatataagaaGAGAAAGTGCCAACCCTATGGTCTGGTAGGCTGCTTA
TAATTcaatcaccaaacatagaatctagcccccaggtccatctggaaaaa
tttaggtgacccctaacatggttagtcccccctagccacaggctaaaacc
aggtaccaattgctgcttgaccttttagccccccccctcaggccaggggg
gggggggttccagccatgCGGAACAATCCATTATCGCCtgaaaaacaagt
tttcttgaatttctcgagctgtacttaatatttttcataaagttttgaac
aCTGATGCAAATTGGCAATATCTAAAATGTGACTGAGCATGATTCTCAAC
AAACATACTTTTCCGGCCTAAattgccggaaatatgctggaaaaccagtt
tttggcattttttagagatttcataatcagtttttatgatttttgcacaa
agatgcgtattagcaatgtccaaaacatggttgatttggatttttgagaa
aaatattttccggtcGAAATGCTTGAAATATGGTGTTTCTTattttactt
actttttttattaCCATTCTATATTAtttatcatcaggtaggtccaatat
aCATTGTACTTGTTTACTTTTATTCCTATCTTGAGATTTAAGCAATTAAT
TTGCTCAAAATTCAACTAATTCAGGCTGATGATTGTTCTTATATTGTTCT
TATTATTTGACATTCTTGGAGCCTTATAGTTCTTATTGTGTTGTTCTTGT
AAAAGAAGAAGAGTGTTTGTCAGGTATCAGCTATCTTTTTCCTAAAGATG
TAAGCAATCACGACGCttgaaaatgataaacaataaaaaaatcaattttt
gtccttttttttctttcagagtaaaaataaaaatgaaaaatcatttgACT
GTGAATATTGGCAATAACCCTCCCTCCATATTTTATTGGTGTGATGCAGA
TTCATATGACAATTTGAAGAAAAGCATTGAAAAACGTTATGAGATTCCAG
CTTCATGTCAAGGCATTGAACATCAAGGAATTATTTTGGATACAGAAACT
TTTGAAGAACTTTATCAAAAACGATTGCAGTTTGATATTAAACTTGATGT
TATTATTGATGATAGTACTGGTAACTTGATTGATTCTACCTTAGTACATA
CCCGAAGAAATCTtgccttgaaaaaaaattcaggaataaggaatataaaa
attattgatttgtctagACACTTGTATCAATCCTGTCAAATTATTTATAA
AGATTTGGATATCAATACAACGGTACTAGATCTGAAGAAAAGAGTTTATG
CTgaaaaaaggataaaagaatCGACTGAcagaatcaattttattgatgGG
TTTATGATTCTCACAGACAATCAATTGTTGGTCGATTTATTCCTGGATGG
ATTCTTAAAGTATACTCAATTCTCTTTCAATATCGTAGTTATTACAGTGG
ATGATTGTATATTCGATATGTTTGAGAATGATGATGAAAATACTACAATC
GATATCAAATTCcgtgaaatcaaaatttcaatgcACGGAATAGAAGCTAA
AAGGCAAATTGGATATCCAATATTATATATAGGTTCTTTTTATCTTGAGG
ACATAAAAGTATGGATCAGAGACTTGTATCAGATTCCTATTGAAGAACAG
ACTATTGGATATTGTGACGGACCAATTTTTACCAATAACTTGTCACGTGT
CTGGCTCGATCGATCTTATCAACTAAAAAATATGGAGCTTCATCTATACG
TTCATTACACTGACAAAACTGATTTAAAGGAAATTTATACTCAGAACGAT
ATAAGAATGATGGAACCTATAAAAATTGTTAGTGGAAACGAGGAAaatat
ttggtatttttattatAGAGGGAACAATGGACCATCTCTTAATGATTTCC
TTCATGAAACCTTTGGAATTCGAAAAGATATACGTAggtttcttttcttt
gtaaatCAAAATCGTGTCAAATATTCAcaaattgacatttttagaTGTAA
AAAAATCAGACTAGCAATTCAAGTAGATGATGATGAAACAGACTTATTGA
AACACCTTGAACCATTAGGTTTATCTAGAGTCGGTTCAATTATTATTAAA
TGCCCTAATACCGGTTCAACGTTCTGTAGTATACCTTTATCGCAATGGGA
ATTTTTTGTTAATCCTGAAGATGTGTGCAATGAGATTATTAAAAAACATC
GAGAATTTTTCTATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTA
GACAAAGATACCATCATAGAAAGCTTATTCataagagaaaatgaaatttt
cgaaaacGTCGACGTAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAG
AAGTTTGTGAAATGCATCATTTAGTATACTTGAAAGAAATTAACGTTAAA
TTTCTGACAGGTCAATTTACAATAGATTTGTTTCAGCAAGAAACTCTGTT
AACTGTTGGAGATCTCAAAAGAACAATCTATGAAATAAAAGACATTGCAC
CACATTTGCAATCACTGTTTTGTTACAAATTTAATGATTTTCAGTTAGAA
GGTTTCATGgaaatattttcactttcaaCGGTTGTCAAAGAAAATGATTC
GATTACTCTTAACTTGATTGTCAAACCAGCAAAAGAATTACAAGTAGTTA
TCAAATGTGCTGGACATCTTCTCAGTGAAACTATCGATTTAAATATGAAG
GAAACAGATACGATATCAGATATTAAGAAGGAAATATCAAAAATTACCAA
TCATCCGTCTTCCATTATATCAATCCTAAGTGTGGAAAACTGTTTATGGA
AATTTGGTGAGAATATAGTTGGATTTGATGACAATGACCAACTTTggaat
ctgaaattttcagaaaccATTTCAATTAAATTATATGCAATGTTGCAGGT
ATTGGTTTCGATTAAAGCTACTGATTTAACCATCCACCAACGTTCATTTC
GAATTACCAACTTCAAATCCAATAGAATCAGAAACATTGCTCAAGCctta
gaaaaagagaaaaatctttttggatCTACTCCAAAGCTTGTTACAAAACC
AGGCATCACCCTGGAAACAAAGTTAATAGATATTGGTGAAGAATTAATTG
AATTTGTTTCGCAACCTTCTTCCACCAAATGTTTATTGtcataaaataat
atttgtgtATCTTAAAGAGAAGTCATTTTAACAGTAAAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049895-exon-scaffold_167-1491911889:420183..421257 | TCONS_00049895-exon-scaffold_167-1491911889:420183..421257 | Clytia hemisphaerica | exon |
TCONS_00049895-exon-scaffold_167-1510915933:420183..421257 | TCONS_00049895-exon-scaffold_167-1510915933:420183..421257 | Clytia hemisphaerica | exon |
TCONS_00049895-exon-scaffold_167-1575043694:420183..421257 | TCONS_00049895-exon-scaffold_167-1575043694:420183..421257 | Clytia hemisphaerica | exon |
TCONS_00049895-exon-scaffold_167-1491911889:426520..427771 | TCONS_00049895-exon-scaffold_167-1491911889:426520..427771 | Clytia hemisphaerica | exon |
TCONS_00049895-exon-scaffold_167-1510915933:426520..427771 | TCONS_00049895-exon-scaffold_167-1510915933:426520..427771 | Clytia hemisphaerica | exon |
TCONS_00049895-exon-scaffold_167-1575043694:426520..427771 | TCONS_00049895-exon-scaffold_167-1575043694:426520..427771 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_167 | supercontig | scaffold_167:420183..427771 + |
Blast
The following BLAST results are available for this feature:
|