TCONS_00049895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049895
Unique NameTCONS_00049895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049895 ID=TCONS_00049895|Name=TCONS_00049895|organism=Clytia hemisphaerica|type=transcript|length=2327bp
taaaaataaaaatgaaaaatcatttgACTGTGAATATTGGCAACAATCCT
CCCTCCATATTTTACTGGTGTGATGCAGATTCATATGacaatttgaagaa
aagtattgaaaaaCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAAC
ATCAAGGAATTATTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAA
CGATTGCAGTTTGATATTAAACTTGATGTTATTATTGATGATAGTACTGG
TAACTTGATTGATTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGG
AAAAAAGTTCAGGAATAAGGAATATAAAAATTATTGATTTATCTAGACAC
TTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGATATCAATACAAC
GGTACTAGATCTGAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaat
CGACTAAcagaataaattttatttatgGTAAACTTATGATTCTCACAGAC
AATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCA
ATTCTCTTTCAATATCGTAGTTATCACAGTGGATGATTGTATATTCGATA
TGTTTGAGAATGATGATGAAAATACTACAATCAATATCAAATTCcgtgaa
atcaaaatttcaatgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCC
AATATTCGATATAGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCA
AAGACATGTATCAGATTCCTATTGAAGAACAGACTTTTGGATATTGTGAC
GGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCG
ATCTTATCAACTAGAAAATGTGGAGCTTCAGCTATACGTTCATTACACTG
ACAAAACTGAGTTAAAGGAAATTTATGGTCAGAACGATACAAAAATGATG
GAACCTTCAAAAATTGTTAGtggaaacaagaaaaatatttggtATTATTA
TTATAGAGGGAACAATGGACCATCTCTTAATGATTTTCTTCATGAAACCT
TTAGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCAAAAT
CGTGTCAAATATTCAcaaattgacatttttagaTGTAAAAAAATCAGACT
AGCAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAAC
CATTAGGTTTATCTAGAGTCGGTTCAATTATTATTAAATGCCCTAATACC
GGTTCAACGTTCTGTAGTATACCTTTATCGCAATGGGAATTTTTTGTTAA
TCCTGAAGATGTGTGCAATGAGATTATTAAAAAACATCGAGAATTTTTCT
ATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACC
ATCATAGAAAGCTTATTCataagagaaaatgaaattttcgaaaacGTCGA
CGTAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAA
TGCATCATTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGT
CAATTTACAATAGATTTGTTTCAGCAAGAAACTCTGTTAACTGTTGGAGA
TCTCAAAAGAACAATCTATGAAATAAAAGACATTGCACCACATTTGCAAT
CACTGTTTTGTTACAAATTTAATGATTTTCAGTTAGAAGGTTTCATGgaa
atattttcactttcaaCGGTTGTCAAAGAAAATGATTCGATTACTCTTAA
CTTGATTGTCAAACCAGCAAAAGAATTACAAGTAGTTATCAAATGTGCTG
GACATCTTCTCAGTGAAACTATCGATTTAAATATGAAGGAAACAGATACG
ATATCAGATATTAAGAAGGAAATATCAAAAATTACCAATCATCCGTCTTC
CATTATATCAATCCTAAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGA
ATATAGTTGGATTTGATGACAATGACCAACTTTggaatctgaaattttca
gaaaccATTTCAATTAAATTATATGCAATGTTGCAGGTATTGGTTTCGAT
TAAAGCTACTGATTTAACCATCCACCAACGTTCATTTCGAATTACCAACT
TCAAATCCAATAGAATCAGAAACATTGCTCAAGCcttagaaaaagagaaa
aatctttttggatCTACTCCAAAGCTTGTTACAAAACCAGGCATCACCCT
GGAAACAAAGTTAATAGATATTGGTGAAGAATTAATTGAATTTGTTTCGC
AACCTTCTTCCACCAAATGTTTATTGtcataaaataatatttgtgtATCT
TAAAGAGAAGTCATTTTAACAGTAAAg
Run BLAST on NCBI

transcript from alignment at scaffold_167:420183..427771+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049895 ID=TCONS_00049895|Name=TCONS_00049895|organism=Clytia hemisphaerica|type=transcript|length=7589bp|location=Sequence derived from alignment at scaffold_167:420183..427771+ (Clytia hemisphaerica)
taaaaataaaaatgaaaaatcatttgACTGTGAATATTGGCAACAATCCT CCCTCCATATTTTACTGGTGTGATGCAGATTCATATGacaatttgaagaa aagtattgaaaaaCGTTATGAGATTCCAGCTTCATGTCAAGGCATTGAAC ATCAAGGAATTATTTTGAACACAGAAACTTTTGAAGAACTTTATCAAAAA CGATTGCAGTTTGATATTAAACTTGATGTTATTATTGATGATAGTACTGG TAACTTGATTGATTATACCTTAGTGCATACCCGTAGAAATCTTGCCTTGG AAAAAAGTTCAGGAATAAGGAATATAAAAATTATTGATTTATCTAGACAC TTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGATATCAATACAAC GGTACTAGATCTGAAAAAAAGAGTTTATGCTgaaaaaaggataaaagaat CGACTAAcagaataaattttatttatgGTAAACTTATGATTCTCACAGAC AATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTTAAAGTATACTCA ATTCTCTTTCAATATCGTAGTTATCACAGTGGATGATTGTATATTCGATA TGTTTGAGAATGATGATGAAAATACTACAATCAATATCAAATTCcgtgaa atcaaaatttcaatgcAAGGAATAGAAGCTATAAGGCAAATCGGATATCC AATATTCGATATAGGTTCTTTTTATCCTGAGGACATGAAAGTATGGATCA AAGACATGTATCAGATTCCTATTGAAGAACAGACTTTTGGATATTGTGAC GGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATCG ATCTTATCAACTAGAAAATGTGGAGCTTCAGCTATACGTTCATTACACTG ACAAAACTGAGTTAAAGGAAATTTATGGTCAGAACGATACAAAAATGATG GAACCTTCAAAAATTGTTAGtggaaacaagaaaaatatttggtATTATTA TTATAGAGGGAACAATGGACCATCTCTTAATGATTTTCTTCATGAAACCT TTAGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCCAAAT CCTGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCAATTT AGCAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAAC CATTAGGTTTATCTAGAGTCGGTTCGATTATTATCAAATGCCCTAATACC GGTTCAGTTTTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGA TCTTGAAGATGTGTGCAATGAGattattaaaaaacatcaaaaacttttCT ATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACC ATCATAGAAAGCTTATTCataagagaaaatgaaattttcgaaaacGTCGA CGTAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAA TGCATCATTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGT CAATTTACAATAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGA TCTCAAAAGAACAATCTATGAAATAAAAGACATTGCACCACATTTGCAAT CACTGTTTTGTTACAAATTTAGTGATTTTGAGTTAGAAGGTtttatggaa atattttcacttttaacAGTTGTCAAAGAAAATGATTCGATTACTCTAAA CTTGATTGTCAAACCAGCAAAAGAATTACAAGTAGCTATCAAACTTGCTG GACATCTTCACAGTGAAACTATCAATTTANCAAATCCTGTCAAACATTCA CAAATTGACCTTTTTAGATGTAAAGAAATCAATTTAGCAATTCAAGTAGA TGATGATGAAACAGACTTATTGAAACACCTTGAACCATTAGGTTTATCTA GAGTCGGTTCGATTATTATCAAATGCCCTAATACCGGTTCAGTTTTCTGT AGTATACCCTTATCGCAATGGAAATTTTTTGTCGATCTTGAAGATGTGTG CAATGAGATTAttaaaaaccatcaaaaacttttctttacaaaaatttGGC TTGCTCATGATGGTAACAAGTTAGACAAAGATACCATCATAGAAAGCTTA TTCATTAGAGAAAATGAAATTTTCGAAAACGTCGACTTAACCTTGTTCGT CCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTAT ACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGAT TTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAGAACAAT CTATGAAATAAAAGACATTGCACAACATTTGCAATCACTGTTTTGTTACA AATTTAGTGATTTTGAGTTAGAAGGTTTTATGGAAATATTTTCACTTTCA ACAGTTGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAACC AGCAAAAGAATTACAAGTAGCTATCAAACTTGCTGGACATCTTCACAGTG AAACTATCGATTTAAATATGAAGGAAACCGATACGATATCAGATATTAAG AAGGAAGTATCAAAAATTACCAATCATCCATCTTCCATTATATCAATCCT AAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAATATAGTTGGATTTG ATGACAATGACCAACTTTGGAATCTGaagctttcagaaaacaattcaaTT GAATTTTTTGCATTCTTGCAGGTATTGGTTTCAATTAAAGCTACTAATTC AGCCATCCACCAACGTTCATTTCGAATTACCAACTTCAAATCCAATAAAA TCAGAAACATTACCCAAGTcttagaaaaagagaaaaagctTTTCGGATCT ACTCCAAAGCTTGTTGAAAAACCAGGCATCACCCTGGAAACGAAGTTAAT AGATATTGGTGAAGAATTAATTGAATTTGTTTCGCAATCTTCTTCCACCA AATGTTTATTgtcatgaaaataatatttatatTCCAAAAGCTCTTTCAAT ACATTTGCgagtttctaaatttttaaatcaCTGGTAATGTTAATGCTATT AAACCATTTGAATCTTAACTTTTCTCTTTCTACGGCTTTGGCTCCTATCA GAATCTTAATCAATATTAGTATAAATATCATTTTGAATCAACATCTGCAA ATTATTAATTTTAATGATCCAGTGTGTCACCataaaaacgaacaaattta ttttataaagTAACCTCCTCAAAACTCATTATCTTAACTTTTTAATTGCA GTAAACATTcaagaagaaatatttaaaatgagtAATAACAATTTTTCACA CAAGAACATTATTAATAACACTACCTATCATCAAGTATGTTTCAATTGTc aaaaaaacctgatttttgaagccagaaCTTTCTTAAAATTGCCGGAACCA TGGCTttgcagcaggttttaggtgacccctaagatttaggtaacccctgg ttgccaaatattttaggtgacccctaatcCAATGACATNCACATTTCTGA GAATAAAATTCCAAAAGCTCTTTCAATACATTTGCGAGTTTCTAGATTTT TAAAACACTGGTAATGTTAATGCTATTAAACCATTTGTATCTTAACTTTT CTCTTTCTACGGCTTTGGCTCCTNgtcaaattttttcgaaaatccttttt aaacaatcaaataaatacaacagttagtttagcttattgctgAATAAaat aaatgccctaagaaatAAGTAAATGACACAGGATTAAAGAACttttacag atcagtgccgtaggaagcattttcatattagtGTTGGGCTGAAGTTTTGT GACAcagcgagggccaaccatggtttggcNAAATGACACAGGATTAAAGA ACttttacagatcagtgccgtaggaagcattttcatattagtGTTGGGCT GAAGTTTCGTGACAcagcgagggccaaccatggtttggtNTAATTTTAAT GATCCAGTGTGTCACCataaaaacgaacaaatttattttataaagTAACC TCCTCAAAACTCATTATCTTAACTTTTTAATTCCAGTAAACATTCAAGAA GAAATGTTTACAATGAGTAATAACAATTTTTCCACACAATAACATTATTA ATAACACTACCTATCATCAAGTATGTTTCAATTGTcaaaaaaacctgatt tttgaagccagNgtcaaattttttcgaaaatcctttttaaacaatcaaat aaatacaacagttagtttagcttattgctgAATAAaataaatgccctaag aaatAAGTAAATGACACAGGATTAAAGAACTTTTACAGATCAGTGCACTG AAGATAATACAttagataccaaattgtcagtttttgagcattgcttagat taaaatataagaaGAGAAAGTGCCAACCCTATGGTCTGGTAGGCTGCTTA TAATTcaatcaccaaacatagaatctagcccccaggtccatctggaaaaa tttaggtgacccctaacatggttagtcccccctagccacaggctaaaacc aggtaccaattgctgcttgaccttttagccccccccctcaggccaggggg gggggggttccagccatgCGGAACAATCCATTATCGCCtgaaaaacaagt tttcttgaatttctcgagctgtacttaatatttttcataaagttttgaac aCTGATGCAAATTGGCAATATCTAAAATGTGACTGAGCATGATTCTCAAC AAACATACTTTTCCGGCCTAAattgccggaaatatgctggaaaaccagtt tttggcattttttagagatttcataatcagtttttatgatttttgcacaa agatgcgtattagcaatgtccaaaacatggttgatttggatttttgagaa aaatattttccggtcGAAATGCTTGAAATATGGTGTTTCTTattttactt actttttttattaCCATTCTATATTAtttatcatcaggtaggtccaatat aCATTGTACTTGTTTACTTTTATTCCTATCTTGAGATTTAAGCAATTAAT TTGCTCAAAATTCAACTAATTCAGGCTGATGATTGTTCTTATATTGTTCT TATTATTTGACATTCTTGGAGCCTTATAGTTCTTATTGTGTTGTTCTTGT AAAAGAAGAAGAGTGTTTGTCAGGTATCAGCTATCTTTTTCCTAAAGATG TAAGCAATCACGACGCttgaaaatgataaacaataaaaaaatcaattttt gtccttttttttctttcagagtaaaaataaaaatgaaaaatcatttgACT GTGAATATTGGCAATAACCCTCCCTCCATATTTTATTGGTGTGATGCAGA TTCATATGACAATTTGAAGAAAAGCATTGAAAAACGTTATGAGATTCCAG CTTCATGTCAAGGCATTGAACATCAAGGAATTATTTTGGATACAGAAACT TTTGAAGAACTTTATCAAAAACGATTGCAGTTTGATATTAAACTTGATGT TATTATTGATGATAGTACTGGTAACTTGATTGATTCTACCTTAGTACATA CCCGAAGAAATCTtgccttgaaaaaaaattcaggaataaggaatataaaa attattgatttgtctagACACTTGTATCAATCCTGTCAAATTATTTATAA AGATTTGGATATCAATACAACGGTACTAGATCTGAAGAAAAGAGTTTATG CTgaaaaaaggataaaagaatCGACTGAcagaatcaattttattgatgGG TTTATGATTCTCACAGACAATCAATTGTTGGTCGATTTATTCCTGGATGG ATTCTTAAAGTATACTCAATTCTCTTTCAATATCGTAGTTATTACAGTGG ATGATTGTATATTCGATATGTTTGAGAATGATGATGAAAATACTACAATC GATATCAAATTCcgtgaaatcaaaatttcaatgcACGGAATAGAAGCTAA AAGGCAAATTGGATATCCAATATTATATATAGGTTCTTTTTATCTTGAGG ACATAAAAGTATGGATCAGAGACTTGTATCAGATTCCTATTGAAGAACAG ACTATTGGATATTGTGACGGACCAATTTTTACCAATAACTTGTCACGTGT CTGGCTCGATCGATCTTATCAACTAAAAAATATGGAGCTTCATCTATACG TTCATTACACTGACAAAACTGATTTAAAGGAAATTTATACTCAGAACGAT ATAAGAATGATGGAACCTATAAAAATTGTTAGTGGAAACGAGGAAaatat ttggtatttttattatAGAGGGAACAATGGACCATCTCTTAATGATTTCC TTCATGAAACCTTTGGAATTCGAAAAGATATACGTAggtttcttttcttt gtaaatCAAAATCGTGTCAAATATTCAcaaattgacatttttagaTGTAA AAAAATCAGACTAGCAATTCAAGTAGATGATGATGAAACAGACTTATTGA AACACCTTGAACCATTAGGTTTATCTAGAGTCGGTTCAATTATTATTAAA TGCCCTAATACCGGTTCAACGTTCTGTAGTATACCTTTATCGCAATGGGA ATTTTTTGTTAATCCTGAAGATGTGTGCAATGAGATTATTAAAAAACATC GAGAATTTTTCTATACAAAAATTTGGCTTGCACATGATGGTAACAAGTTA GACAAAGATACCATCATAGAAAGCTTATTCataagagaaaatgaaatttt cgaaaacGTCGACGTAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAG AAGTTTGTGAAATGCATCATTTAGTATACTTGAAAGAAATTAACGTTAAA TTTCTGACAGGTCAATTTACAATAGATTTGTTTCAGCAAGAAACTCTGTT AACTGTTGGAGATCTCAAAAGAACAATCTATGAAATAAAAGACATTGCAC CACATTTGCAATCACTGTTTTGTTACAAATTTAATGATTTTCAGTTAGAA GGTTTCATGgaaatattttcactttcaaCGGTTGTCAAAGAAAATGATTC GATTACTCTTAACTTGATTGTCAAACCAGCAAAAGAATTACAAGTAGTTA TCAAATGTGCTGGACATCTTCTCAGTGAAACTATCGATTTAAATATGAAG GAAACAGATACGATATCAGATATTAAGAAGGAAATATCAAAAATTACCAA TCATCCGTCTTCCATTATATCAATCCTAAGTGTGGAAAACTGTTTATGGA AATTTGGTGAGAATATAGTTGGATTTGATGACAATGACCAACTTTggaat ctgaaattttcagaaaccATTTCAATTAAATTATATGCAATGTTGCAGGT ATTGGTTTCGATTAAAGCTACTGATTTAACCATCCACCAACGTTCATTTC GAATTACCAACTTCAAATCCAATAGAATCAGAAACATTGCTCAAGCctta gaaaaagagaaaaatctttttggatCTACTCCAAAGCTTGTTACAAAACC AGGCATCACCCTGGAAACAAAGTTAATAGATATTGGTGAAGAATTAATTG AATTTGTTTCGCAACCTTCTTCCACCAAATGTTTATTGtcataaaataat atttgtgtATCTTAAAGAGAAGTCATTTTAACAGTAAAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031630XLOC_031630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049895-exon-scaffold_167-1491911889:420183..421257TCONS_00049895-exon-scaffold_167-1491911889:420183..421257Clytia hemisphaericaexon
TCONS_00049895-exon-scaffold_167-1510915933:420183..421257TCONS_00049895-exon-scaffold_167-1510915933:420183..421257Clytia hemisphaericaexon
TCONS_00049895-exon-scaffold_167-1575043694:420183..421257TCONS_00049895-exon-scaffold_167-1575043694:420183..421257Clytia hemisphaericaexon
TCONS_00049895-exon-scaffold_167-1491911889:426520..427771TCONS_00049895-exon-scaffold_167-1491911889:426520..427771Clytia hemisphaericaexon
TCONS_00049895-exon-scaffold_167-1510915933:426520..427771TCONS_00049895-exon-scaffold_167-1510915933:426520..427771Clytia hemisphaericaexon
TCONS_00049895-exon-scaffold_167-1575043694:426520..427771TCONS_00049895-exon-scaffold_167-1575043694:426520..427771Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:420183..427771 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0.049377 0 0 0 0 0.0371385 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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