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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049896 ID=TCONS_00049896|Name=TCONS_00049896|organism=Clytia hemisphaerica|type=transcript|length=397bp
GTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATT
TAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACA
ATAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAG
AACAATCTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTT
GTTACAAATTTAGTGATTTTGAGTTAGAAGGTTTTATGGAAATATTTTCA
CTTTCAACAGTTGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGT
CAAACCAGCAAAAGAATTACAAGTAGCTATCAAACTTGCTGGACATCTTC
ACAGTGAAACTATCGATTTAAATATGAAGGAAACCGATACGATATCA Run BLAST on NCBI protein sequence of TCONS_00049896-protein >TCONS_00049896-protein ID=TCONS_00049896-protein|Name=TCONS_00049896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
FVLPNKRVKEVCEMHHLVYLKEINVKFLTGQFTIDLFQQENLLTVGDLKR
TIYEIKDIAPHLQSLFCYKFSDFELEGFMEIFSLSTVVKENDSITLNLIV
KPAKELQVAIKLAGHLHSETIDLNMKETDTIS Run BLAST on NCBI transcript from alignment at scaffold_167:421642..422773+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049896 ID=TCONS_00049896|Name=TCONS_00049896|organism=Clytia hemisphaerica|type=transcript|length=1132bp|location=Sequence derived from alignment at scaffold_167:421642..422773+ (Clytia hemisphaerica)
GTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATT
TAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACA
ATAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAG
AACAATCTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTT
GTTACAAATTTAGTGATTTTGAGTTAGAAGGTtttatggaaatattttca
cttttaacAGTTGTCAAAGAAAATGATTCGATTACTCTAAACTTGATTGT
CAAACCAGCAAAAGAATTACAAGTAGCTATCAAACTTGCTGGACATCTTC
ACAGTGAAACTATCAATTTANCAAATCCTGTCAAACATTCACAAATTGAC
CTTTTTAGATGTAAAGAAATCAATTTAGCAATTCAAGTAGATGATGATGA
AACAGACTTATTGAAACACCTTGAACCATTAGGTTTATCTAGAGTCGGTT
CGATTATTATCAAATGCCCTAATACCGGTTCAGTTTTCTGTAGTATACCC
TTATCGCAATGGAAATTTTTTGTCGATCTTGAAGATGTGTGCAATGAGAT
TAttaaaaaccatcaaaaacttttctttacaaaaatttGGCTTGCTCATG
ATGGTAACAAGTTAGACAAAGATACCATCATAGAAAGCTTATTCATTAGA
GAAAATGAAATTTTCGAAAACGTCGACTTAACCTTGTTCGTCCTACCCAA
TAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTATACTTGAAAG
AAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGATTTGTTTCAG
CAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAGAACAATCTATGAAAT
AAAAGACATTGCACAACATTTGCAATCACTGTTTTGTTACAAATTTAGTG
ATTTTGAGTTAGAAGGTTTTATGGAAATATTTTCACTTTCAACAGTTGTC
AAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAACCAGCAAAAGA
ATTACAAGTAGCTATCAAACTTGCTGGACATCTTCACAGTGAAACTATCG
ATTTAAATATGAAGGAAACCGATACGATATCA Coding sequence (CDS) from alignment at scaffold_167:421642..422773+ >TCONS_00049896 ID=TCONS_00049896|Name=TCONS_00049896|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_167:421642..422773+ (Clytia hemisphaerica)
TTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTT
AGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAA
TAGATTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAGA
ACAATCTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTTG
TTACAAATTTAGTGATTTTGAGTTAGAAGGTTTTATGGAAATATTTTCAC
TTTCAACAGTTGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTC
AAACCAGCAAAAGAATTACAAGTAGCTATCAAACTTGCTGGACATCTTCA
CAGTGAAACTATCGATTTAAATATGAAGGAAACCGATACGATATCATTCG
TCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTA
TACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGA
TTTGTTTCAGCAAGAAAATCTGTTAACTGTTGGAGATCTCAAAAGAACAA
TCTATGAAATAAAAGACATTGCACCACATTTGCAATCACTGTTTTGTTAC
AAATTTAGTGATTTTGAGTTAGAAGGTTTTATGGAAATATTTTCACTTTC
AACAGTTGTCAAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAAC
CAGCAAAAGAATTACAAGTAGCTATCAAACTTGCTGGACATCTTCACAGT
GAAACTATCGATTTAAATATGAAGGAAACCGATACGATATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049896-exon-scaffold_167-1491911889:421642..421871 | TCONS_00049896-exon-scaffold_167-1491911889:421642..421871 | Clytia hemisphaerica | exon |
| TCONS_00049896-exon-scaffold_167-1510915933:421642..421871 | TCONS_00049896-exon-scaffold_167-1510915933:421642..421871 | Clytia hemisphaerica | exon |
| TCONS_00049896-exon-scaffold_167-1575043694:421642..421871 | TCONS_00049896-exon-scaffold_167-1575043694:421642..421871 | Clytia hemisphaerica | exon |
| TCONS_00049896-exon-scaffold_167-1491911889:422607..422773 | TCONS_00049896-exon-scaffold_167-1491911889:422607..422773 | Clytia hemisphaerica | exon |
| TCONS_00049896-exon-scaffold_167-1510915933:422607..422773 | TCONS_00049896-exon-scaffold_167-1510915933:422607..422773 | Clytia hemisphaerica | exon |
| TCONS_00049896-exon-scaffold_167-1575043694:422607..422773 | TCONS_00049896-exon-scaffold_167-1575043694:422607..422773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:421642..422773 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029071 | Ubiquitin-rel_dom |
Blast
The following BLAST results are available for this feature:
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