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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049916 ID=TCONS_00049916|Name=TCONS_00049916|organism=Clytia hemisphaerica|type=transcript|length=4657bp
aacaaaatttgaaagATAAGATCAATTTTGAGAGCGAAGATGACGTTATC
CATTCATACAGTGATACAAGTGGTTGAGTTTTGGTTGAGACTCGCTACTT
TCTTACACGAACCTTTAAAACAAGCTTTATTAAGAATTCTTCATGACCCA
AACTACAATGGATTACCGATCAATCCTCAACAACTCTACATCGAGCTGTC
AACAAAATACCAAAAGAAAATCACTaaattaaaaaacaagaaaattttac
aGCAAGATCAAGTGGATAAATTATTACCTCCAAATAGTAATGCAACAGAT
TCCAGTCAGTTTGATATCACCTTGATTTGTATCCTTATCAGGAATTGCAC
TAAATTGCCAGGACCTCTTAATGGATGGGATGACAATAAACCACCACCTC
ACGATCAAAGTCTTGCAGCTTTCGTTATCCGTGCCAGAGAATGGAGAAAT
TTTGTGCACCATACAGAACCTAAGAATATCACTTTGGCGATTTTCCAGCA
GAAATGGGCGGAAGGAGCAACCATTATTCACAAACTTGGATTCCAATATG
ATACGAACAAACTGCTCAACATTTCTCTGGATCCACAacacaaaacattt
ttaaaaccaCTCTTTCACTACTTCAAAAATGTTCAAGACTCTCTTACCAA
ACAACACAAGGCTCTCGATCAACAACAACAGACTTTGACTCAAGATATAG
CTgatttagaaaaacaacaaTCAAAAAACACACACGACATCGCAGACCTT
ATGTACCAGCAACAGTGCGCTGAACAAGAACAAATATTTCTAAAGCAGCA
ACAAAAAATCACAGAACAAACATCTGACTCcaatacaaaagaaatcaaaa
aattgaccGACCAACTGAATCTTACCTTGGACCAAGTCTCATCTTTATTG
GAGCAATTAGAAATAATAAGAGATGAAGTAGAGGACTTGAAAGAAAAGAA
GTTCCTTTCTTCAGGATCACACTGCCTGGAAGAGGTTCTCCAGAAAATCG
AACAACTATTAACCGATCAAGAACACAGGAGACTCCTGAAGAATCTTGGC
ATAGAATATGAAGAAGGAATGACGATACAAGAACTTTTGGAGAGTGTACC
ATGGAAAGATCTCAAGAAAGAATTGGAAATGATGAGAAGATACAACGTGG
TGGAGCACATTCAGAAAACTACCTTGATTACAAATGgttagtcaattttt
ttatatctcAAGTTTGAGTGTATCGAAAGGGTGTATACGTATTACAGGCG
CAGTAGTGGTTATCTATCTTGACCACCGTTAAGGAACCGACCTCCTTAAC
GGTTCGGTGGTGTGATTCACTTGGAAAGTAGGTGTGCCTTTGCCAGGGTT
TACCCATCCTATGTGAGGGGCATTTGGTAGACTAAAACTCGAGAAACCTG
TCGGCATCGATTCCACAATACATCGTGGATGAAGTGAGAGTGCGTTGGCC
TTGTTCCCCAGTTTTTCACGCTGTATAAACTAAAGCGTAAGACGATTCTA
ACGAGACGATTCTAACNGTGCGTTGGCCTTGTTCCCCAGTGGTTTACGCT
GTATAAACTAAACTAAAGCGTAAGACGATTCTAACGAGACGACTCCTAGA
CCGCTCAAAACAAAACCGGGCATCCCTGTAAGGAAAAGCaagtcatcaaa
atcatttgtaTTACAAAATTCAAAGCTAAAAGCATAATCCTCATTTTAAT
AGGCTGTTGGTGACAAGGGGCATCATTAAAACTGAGATATGTCATTCATC
GGcaattatttcaaatttgtattttcatGAGCTTGAATCCATTTCAATCA
AGGTTCTTTATTCTTCTTTGATTTCAGCTCTTCAAACAGCGTCAAACAAA
CTCCGGAAGAAGTATAGAAAAGACCTCATAAAATGTCTTGTAGAGCAACC
TCTCTCCTCAACGGAGATGACAGAGATAAACGTATTTAGGGAAGACATTT
TCATTGACCTTATGGTACTCCCATCATCAGAAGTCGATAGAAAGTGGAAC
AACTCGGATCGAGAAGCACTGATGGAGCAACAATATCTTCCCAAGTCAAC
AACCCACAATGCAGTTGATCAAATCTTCACTGAAGATGACGAGCTAGCAT
TCATCCGCGGGTATTGGAAAGTCAAGCTTAATTGATATGTTCACCTTTAA
GTGGGCTAAAGAAGAACTCAAAACAGACATTAAGGTGGATTTTCTGTTCA
AATTTACATGCCGTGAACTCAACAACCTGTCaagtaaattttcaaatttg
gagGAACTTTTCAAACTGAATGTGAAATACAAGGATATATTTCGTGATAT
CACATTCGATGATCTGATGGAGATTTCTGACAGAGTGCTTGTGGTGATCG
ATGGTGTTGACGAACTGAAAGACATCTATTTGATGGGGAATCCATCCTGC
AAAAACCAGCTCATACTCGATCTTATAGACCCGAAAGCTATTTGGCTTCC
AAACCATAAGTCTATAGTCTGCGGTCGACCCAAAGCTTGTGAACTGGTTA
AAAGGCAATTTAAATGTTACCATAAAACGATTGAAGTTTGTGGCTTTAGC
GAGGAAAATGTTAACAATTACATCAAGAAATTTTTCGGTGAGCATTACGA
ACAGAAAGGTGTCGCTGTACAGAAATTAATAGAGAGCTCGTACAATCTTC
GTTCGCTGAGTCGAGTACCAGTCTTCTTGTGGGTCATTTGTAATATTTAC
AAGGAAGACAAAATAACTGCACCCATCAACACATATACAGAGTTGTGTTT
CTACTCCTGCTTGATATTACTCAAAAAACATTTTggtgaaaaatccaaaa
actttACCAAATTAATGGATGTTGTCTTAGATCAGGATATCATGCAAGTT
TTACATTCTATCGTGGTACTTTCAGTTAAAACGTACATGGACAATAAAGT
AGTGTTCACCGAAGATGATATCAAATCTTTAAATTATTCTTACCACCTCG
AGGAGACAGGATTTATTACCAAGTACGAAGGCACTAATGATATTGAACCG
AACTACCAGTTTAGACACTTGGTGCTTCAGGAGTTTCTTTGTTCCCTCTA
TATTTGTATAACCAAAGGTATCTCATCATATTATCTATCGAATCGTGAAT
TGTCAAGCTGTAAACCAACAATTTTAGGAATCCATCGACTTTTACGAATG
AAAGATAATAATCTATTCCTCAAATTTTACGACTCTCTAACAAAAATTAA
CGAATCACATTCCAGCTATCTTTCAAAGATGTCCAGACCTTTCAATATTT
TATGGTTCAACCGGTTTGTCATGAAAAACACATTGGAAGTTCCAGATCAA
ATGATCAAAGGAGAAAAACTTGTTATCTCTACATTCAATCCAGTTTGCTC
AGAGTTTTTAGCATTCTACAAGGAATCGAACATTCATGAACTAAATGTCC
CAACAATCACATCAGTTGATATTCTTCTACTAAGCTCTTACAAAGACTAC
AAAAATATCGGTAATCTAATCAAAGACTTGGGAATTAATAACAACATAAC
TATTCAGGAAGGTTTCCATCCAAATTACATTGCAATTGACAATCTTAGCT
TTGCACAGCTAGCTCTTGGGAAAGAATATGACGTTAAAATTTTCCCTATT
TATGATTCTTCTAACGTACGGGAGCGTGCTTCTAACGTACGGGAGCGTGT
TTTTTATGAAAGGAGTAAGGCAACATTGATTTTAGATGTGGAAGCAAGAA
ATGCACCAATATTGACCAGCGAAGGTCTACCATATGGCACCAACAGATAT
CTGAGAGGGGAAATCGTCAAAAACGCCAGAAATGTTTACCTCGATTATGA
TGGCCTAGGTAACATCAGAACATTGAGAACAATTTCAGCGATAATAGAAG
TTCTCGCAAAGGAATACTCGTGTAGAAAGATTCTGATATCGTCCAGAGTT
TATGAAATGTGCAATGAAAGTATTGACGAGTCAGCGCGTTCTTTACTGCA
AGTAGTGGTATCTGAGGGATACAGTACATATTTAGATAAATTGAATGTGT
ACTGCTTTTAGTTTTACCGTGATATTATACTATGATATTATACGAAATTT
TATATTTACTTTAGGAACTTGTTGtatatttaaaagatttttgtccACTC
GAAATTCGTAGTATGAAAACCTTTATTTAAGTAGTTTTATTCAATTCTGT
CTCCATAAGGCTCATTTTTCCATCCACAACACCTTTACTTTATCAAAGCC
ATTTATGATTTAGATTGTTAAACATATCACATTACGTAGTGTAACTTTTC
CTCGAGTTCAATTTCTTGATAAGTCATTTCATTGAAACGAAATATCTATC
GTATCGTCATTTTAAAGTGCCTCGAATGGGCTTAGAAATTTCCTGTTTCG
ATTTCCATGAAGTTCTCTAGATCCTTTTTCCGATCAGAATCTCATTGAAA
AGGGCGCCATTCCTTTAAAATCTTTACATCACTCCAATTGATCCAAAATA
GTATTCGACAGAATTTCAGTGGAATGGTAATCAAGCATGATCACTGTTTA
TCCATATTAGTACTCCATTGAAAAGCGCATCTTTCTCTTAAAATCCTTAC
ACCGTACTGATTCCATTCTTTGCGAGAGATCCACAATTCTTGGGAACTAT
CCAGAATGCTTAGCACGCCACCTCCTTTCCAACCAGCCGTTCGTGGGTCA
TTttcct Run BLAST on NCBI transcript from alignment at scaffold_167:767331..773025+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049916 ID=TCONS_00049916|Name=TCONS_00049916|organism=Clytia hemisphaerica|type=transcript|length=5695bp|location=Sequence derived from alignment at scaffold_167:767331..773025+ (Clytia hemisphaerica)
aacaaaatttgaaaggtatgttttaaattttattaatgTTGTCCATTTGC
TGGGAATAACGGACGTTTTAATCGTACAGTAAGTGAAACATGTTTTCGTA
ATTTCATAATATCCCATAAAAAATGTTCATGGTCGAAAAAAGTATATCAG
GGGGCTTTCTTcaaaagattaataaaatacacgcttcttttataaaaacc
agtaaattttggatGAGCCTGAGattattcttaaatttataTTGTCAGTA
AGTTTTGGCAGAGACTTAAATTGttctaaaatttcttttgttccaAACAA
GAAATGAGCTATTGTTCTGAGGGCCTAAATCTGAGGTTTTGGTGTTCTTA
TGAATTTGTTCTTACAAACAAAGAAGCGTGTAGACTTATTAATGGGAAGA
GTTGAAAATCAAGAACCTTCTATCAATTCTAGAgtttataccgtgagatt
gggtaacttgcatcagtggaggctaacatacatagccctcaaatgaaaga
tctggctggtcattaaaatgcaaagttaaatcaaaacaaaaatggtagag
taaagatgcgagcggagctgcgtagttgtattttaatgaccagccaggtc
attcattttagggctatgtatgttagcctccactgatgcaagttacccaa
tctcacggtatagaCCTAGACTATAAATCTTACCTCACTTTATCTATAGA
TAAGATCAATTTTGAGAGCGAAGATGACGTTATCCATTCATACAGTGATA
CAAGTGGTTGAGTTTTGGTTGAGACTCGCTACTTTCTTACACGAACCTTT
AAAACAAGCTTTATTAAGAATTCTTCATGACCCAAACTACAATGGATTAC
CGATCAATCCTCAACAACTCTACATCGAGCTGTCAACAAAATACCAAAAG
AAAATCACTaaattaaaaaacaagaaaattttacaGCAAGATCAAGTGGA
TAAATTATTACCTCCAAATAGTAATGCAACAGATTCCAGTCAGTTTGATA
TCACCTTGATTTGTATCCTTATCAGGAATTGCACTAAATTGCCAGGACCT
CTTAATGGATGGGATGACAATAAACCACCACCTCACGATCAAAGTCTTGC
AGCTTTCGTTATCCGTGCCAGAGAATGGAGAAATTTTGTGCACCATACAG
AACCTAAGAATATCACTTTGGCGATTTTCCAGCAGAAATGGGCGGAAGGA
GCAACCATTATTCACAAACTTGGATTCCAATATGATACGAACAAACTGCT
CAACATTTCTCTGGATCCACAacacaaaacatttttaaaaccaCTCTTTC
ACTACTTCAAAAATGTTCAAGACTCTCTTACCAAACAACACAAGGCTCTC
GATCAACAACAACAGACTTTGACTCAAGATATAGCTgatttagaaaaaca
acaaTCAAAAAACACACACGACATCGCAGACCTTATGTACCAGCAACAGT
GCGCTGAACAAGAACAAATATTTCTAAAGCAGCAACAAAAAATCACAGAA
CAAACATCTGACTCcaatacaaaagaaatcaaaaaattgaccGACCAACT
GAATCTTACCTTGGACCAAGTCTCATCTTTATTGGAGCAATTAGAAATAA
TAAGAGATGAAGTAGAGGACTTGAAAGAAAAGAAGTTCCTTTCTTCAGGT
AACTTCAATATTTGTTTCTAATGCGTTTGTTTCTAGAAGAATTGGANCCT
TTCTTCAGgtaacttcaatatttttttctaatgcGTTTGTTTTTAGAAGA
ATTGGACGGCAAGACTCTGGCACAAATCATCTCCCTAGTGACTTTCTTAA
TTTTATTCAATACCGATTGCTTCAAATAAACGCTCCGGtagttttttaag
ttttttggttTCTAGGAGGGGCGTTCATTCGAGGGGTGTTTATTTGAGGG
AAGAGGGTGTATAAAAGAAGGGAAAGtctattcgaagtaatacggtatgt
gTATGTACTTGAATATAATTGATAAATTCTTATCAAATCATTCATTTCTA
AGGATCACACTGCCTGGAAGAGGTTCTCCAGAAAATCGAACAACTATTAA
CCGATCAAGAACACAGGAGACTCCTGAAGAATCTTGGCATAGAATATGAA
GAAGGAATGACGATACAAGAACTTTTGGAGAGTGTACCATGGAAAGATCT
CAAGAAAGAATTGGAAATGATGAGAAGATACAACGTGGTGGAGCACATTC
AGAAAACTACCTTGATTACAAATGgttagtcaatttttttatatctcAAG
TTTGAGTGTATCGAAAGGGTGTATACGTATTACAGGCGCAGTAGTGGTTA
TCTATCTTGACCACCGTTAAGGAACCGACCTCCTTAACGGTTCGGTGGTG
TGATTCACTTGGAAAGTAGGTGTGCCTTTGCCAGGGTTTACCCATCCTAT
GTGAGGGGCATTTGGTAGACTAAAACTCGAGAAACCTGTCGGCATCGATT
CCACAATACATCGTGGATGAAGTGAGAGTGCGTTGGCCTTGTTCCCCAGT
TTTTCACGCTGTATAAACTAAAGCGTAAGACGATTCTAACGAGACGATTC
TAACNGTGCGTTGGCCTTGTTCCCCAGTGGTTTACGCTGTATAAACTAAA
CTAAAGCGTAAGACGATTCTAACGAGACGACTCCTAGACCGCTCAAAACA
AAACCGGGCATCCCTGTAAGGAAAAGCaagtcatcaaaatcatttgtaTT
ACAAAATTCAAAGCTAAAAGCATAATCCTCATTTTAATAGGCTGTTGGTG
ACAAGGGGCATCATTAAAACTGAGATATGTCATTCATCGGcaattatttc
aaatttgtattttcatGAGCTTGAATCCATTTCAATCAAGGTTCTTTATT
CTTCTTTGATTTCAGCTCTTCAAACAGCGTCAAACAAACTCCGGAAGAAG
TATAGAAAAGACCTCATAAAATGTCTTGTAGAGCAACCTCTCTCCTCAAC
GGAGATGACAGAGATAAACGTATTTAGGGAAGACATTTTCATTGACCTTA
TGGTACTCCCATCATCAGAAGTCGATAGAAAGTGGAACAACTCGGATCGA
GAAGCACTGATGGAGCAACAATATCTTCCCAAGTCAACAACCCACAATGC
AGTTGATCAAATCTTCACTGAAGATGACGAGCTAGCATTCATCCGCGGGT
ATTGGAAAGTCAAGCTTAATTGATATGTTCACCTTTAAGTGGGCTAAAGA
AGAACTCAAAACAGACATTAAGGTGGATTTTCTGTTCAAATTTACATGCC
GTGAACTCAACAACCTGTCaagtaaattttcaaatttggagGAACTTTTC
AAACTGAATGTGAAATACAAGGATATATTTCGTGATATCACATTCGATGA
TCTGATGGAGATTTCTGACAGAGTGCTTGTGGTGATCGATGGTGTTGACG
AACTGAAAGACATCTATTTGATGGGGAATCCATCCTGCAAAAACCAGCTC
ATACTCGATCTTATAGACCCGAAAGCTATTTGGCTTCCAAACCATAAGTC
TATAGTCTGCGGTCGACCCAAAGCTTGTGAACTGGTTAAAAGGCAATTTA
AATGTTACCATAAAACGATTGAAGTTTGTGGCTTTAGCGAGGAAAATGTT
AACAATTACATCAAGAAATTTTTCGGTGAGCATTACGAACAGAAAGGTGT
CGCTGTACAGAAATTAATAGAGAGCTCGTACAATCTTCGTTCGCTGAGTC
GAGTACCAGTCTTCTTGTGGGTCATTTGTAATATTTACAAGGAAGACAAA
ATAACTGCACCCATCAACACATATACAGAGTTGTGTTTCTACTCCTGCTT
GATATTACTCAAAAAACATTTTggtgaaaaatccaaaaactttACCAAAT
TAATGGATGTTGTCTTAGATCAGGATATCATGCAAGTTTTACATTCTATC
GTGGTACTTTCAGTTAAAACGTACATGGACAATAAAGTAGTGTTCACCGA
AGATGATATCAAATCTTTAAATTATTCTTACCACCTCGAGGAGACAGGAT
TTATTACCAAGTACGAAGGCACTAATGATATTGAACCGAACTACCAGTTT
AGACACTTGGTGCTTCAGGAGTTTCTTTGTTCCCTCTATATTTGTATAAC
CAAAGGTATCTCATCATATTATCTATCGAATCGTGAATTGTCAAGCTGTA
AACCAACAATTTTAGGAATCCATCGACTTTTACGAATGAAAGATAATAAT
CTATTCCTCAAATTTTACGACTCTCTAACAAAAATTAACGAATCACATTC
CAGCTATCTTTCAAAGATGTCCAGACCTTTCAATATTTTATGGTTCAACC
GGTTTGTCATGAAAAACACATTGGAAGTTCCAGATCAAATGATCAAAGGA
GAAAAACTTGTTATCTCTACATTCAATCCAGTTTGCTCAGAGTTTTTAGC
ATTCTACAAGGAATCGAACATTCATGAACTAAATGTCCCAACAATCACAT
CAGTTGATATTCTTCTACTAAGCTCTTACAAAGACTACAAAAATATCGGT
AATCTAATCAAAGACTTGGGAATTAATAACAACATAACTATTCAGGAAGG
TTTCCATCCAAATTACATTGCAATTGACAATCTTAGCTTTGCACAGCTAG
CTCTTGGGAAAGAATATGACGTTAAAATTTTCCCTATTTATGATTCTTCT
AACGTACGGGAGCGTGCTTCTAACGTACGGGAGCGTGTTTTTTATGAAAG
GAGTAAGGCAACATTGATTTTAGATGTGGAAGCAAGAAATGCACCAATAT
TGACCAGCGAAGGTCTACCATATGGCACCAACAGATATCTGAGAGGGGAA
ATCGTCAAAAACGCCAGAAATGTTTACCTCGATTATGATGGCCTAGGTAA
CATCAGAACATTGAGAACAATTTCAGCGATAATAGAAGTTCTCGCAAAGG
AATACTCGTGTAGAAAGATTCTGATATCGTCCAGAGTTTATGAAATGTGC
AATGAAAGTATTGACGAGTCAGCGCGTTCTTTACTGCAAGTAGTGGTATC
TGAGGGATACAGTACATATTTAGATAAATTGAATGTGTACTGCTTTTAGT
TTTACCGTGATATTATACTATGATATTATACGAAATTTTATATTTACTTT
AGGAACTTGTTGtatatttaaaagatttttgtccACTCGAAATTCGTAGT
ATGAAAACCTTTATTTAAGTAGTTTTATTCAATTCTGTCTCCATAAGGCT
CATTTTTCCATCCACAACACCTTTACTTTATCAAAGCCATTTATGATTTA
GATTGTTAAACATATCACATTACGTAGTGTAACTTTTCCTCGAGTTCAAT
TTCTTGATAAGTCATTTCATTGAAACGAAATATCTATCGTATCGTCATTT
TAAAGTGCCTCGAATGGGCTTAGAAATTTCCTGTTTCGATTTCCATGAAG
TTCTCTAGATCCTTTTTCCGATCAGAATCTCATTGAAAAGGGCGCCATTC
CTTTAAAATCTTTACATCACTCCAATTGATCCAAAATAGTATTCGACAGA
ATTTCAGTGGAATGGTAATCAAGCATGATCACTGTTTATCCATATTAGTA
CTCCATTGAAAAGCGCATCTTTCTCTTAAAATCCTTACACCGTACTGATT
CCATTCTTTGCGAGAGATCCACAATTCTTGGGAACTATCCAGAATGCTTA
GCACGCCACCTCCTTTCCAACCAGCCGTTCGTGGGTCATTttcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049916-exon-scaffold_167-1491911889:767331..767345 | TCONS_00049916-exon-scaffold_167-1491911889:767331..767345 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1510915933:767331..767345 | TCONS_00049916-exon-scaffold_167-1510915933:767331..767345 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1575043694:767331..767345 | TCONS_00049916-exon-scaffold_167-1575043694:767331..767345 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1491911889:768030..768978 | TCONS_00049916-exon-scaffold_167-1491911889:768030..768978 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1510915933:768030..768978 | TCONS_00049916-exon-scaffold_167-1510915933:768030..768978 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1575043694:768030..768978 | TCONS_00049916-exon-scaffold_167-1575043694:768030..768978 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1491911889:769333..773025 | TCONS_00049916-exon-scaffold_167-1491911889:769333..773025 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1510915933:769333..773025 | TCONS_00049916-exon-scaffold_167-1510915933:769333..773025 | Clytia hemisphaerica | exon |
| TCONS_00049916-exon-scaffold_167-1575043694:769333..773025 | TCONS_00049916-exon-scaffold_167-1575043694:769333..773025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:767331..773025 + |
Blast
The following BLAST results are available for this feature:
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