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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049928 ID=TCONS_00049928|Name=TCONS_00049928|organism=Clytia hemisphaerica|type=transcript|length=3605bpRun BLAST on NCBI protein sequence of TCONS_00049928-protein >TCONS_00049928-protein ID=TCONS_00049928-protein|Name=TCONS_00049928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=820bp MFYSNDSLYFYHGKLSRDQASQILLRHGNGKDGYYLIRDCSRSPGDYVLSRun BLAST on NCBI transcript from alignment at scaffold_167:1022117..1032229+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049928 ID=TCONS_00049928|Name=TCONS_00049928|organism=Clytia hemisphaerica|type=transcript|length=10113bp|location=Sequence derived from alignment at scaffold_167:1022117..1032229+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:1022117..1032229+ >TCONS_00049928 ID=TCONS_00049928|Name=TCONS_00049928|organism=Clytia hemisphaerica|type=CDS|length=34482bp|location=Sequence derived from alignment at scaffold_167:1022117..1032229+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049928 vs. Swiss-Prot (Human)
Match: ZAP70 (Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 8.772e-67 Identity = 119/259 (45.95%), Postives = 173/259 (66.80%), Query Frame = 1
Query: 1669 QTVIQKDSLELGQ-ELGVGEFGSVLKGVWKSPSGEKISVALKTLHKDKLLQGEKEFLREARVMSQLDHPCIVRLLGVCLGPPMILVQELVTMGAXXXXXXXXXXXXGEIDLKLWAAQIAWGMMYLEQKRFVHRDLATRNILLYNKSQAKISDFGLSRAVGAGSDYYQAQQGGRWPVKWYSPESINYGTFSQKSDVWSYGVTLWEMFTFGELPYGEMTGAEVISLLEQGQRLERPEDCPQHTYSIMLRCWHIDPAQRPTF 2442
+ +++D+L + ELG G FGSV +GV++ ++I VA+K L + +E +REA++M QLD+P IVRL+GVC ++LV E+ G L L+ +++I ++ Q++ GM YLE+K FVHRDLA RN+LL N+ AKISDFGLS+A+GA YY A+ G+WP+KWY+PE IN+ FS +SDVWSYGVT+WE ++G+ PY +M G EV++ +EQG+R+E P +CP Y++M CW RP F
Sbjct: 329 KLFLKRDNLLIADIELGCGNFGSVRQGVYRM-RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDF 586 The following BLAST results are available for this feature:
BLAST of TCONS_00049928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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