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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049932 ID=TCONS_00049932|Name=TCONS_00049932|organism=Clytia hemisphaerica|type=transcript|length=2189bp
gaattatttGTTTATATTCCCCTGGGGAGAACCCTTTTTCTTTATGGTTT
GAGGGGTCTCTCTGTAGTTAGTATAGTTTTGTGAAGTTAAAGAGTGTTAA
AGTTCGTTCAAAACACACGAAAATATGGATAAATTTATTCAATGGATGAG
TTAGACCGCCCTGGAGATATTCCACCTCCCAAGACATTGAAAACAAACGC
CCAACACACCATGGGAAACCGCCCTCCTGTTGCAATGGATCAAAGCGATG
CTATGGATGAAGTAGATCAAGTAGCGAAACCAACAATTTCACAAGCTGGG
GAAAGTGGAACAACTGAGCGCCCCTCGGTGATCATACCCGCCCCTGGTCA
ACAACAACCGCCCGACCTTGAACGTAAAGAGTCCGAAATATTATCCAGTA
TCGCAATGGACGAAACACCACCCGTTTTCCCGACTAANGATATTATCTAG
TATCACAATGGACGAAACACCACCCGTTTTCCCGACTAAGAAGCCCGAAA
AACCGGTTGAAGAAATGCTTTCAACTATTGACATTCCTTTCGACAATGAT
AAATTTCAACTAGAGGAGATACGACCTGAATCACCTGGCGCTGATGCGAC
GGACGCCCCAGCTTCGAGCCAAACTGATGGTCCTTTTAcgtcaacatttt
tcaaaccaGCGCAACCGATCCAGCAATTAGTTCAACATCGTTCAGAACGT
AAGAACAGAGAAGGGATTACCATCAAACATACCACTTATCACCCTAAACC
TTTGGAAAAGAATTCCAAAATGAGTGACCACGCATCGAACATTTATTCTG
ATAGTTTTTACAAAATGGACTGTTTTCCACGTGGGAAATTAACATTGATC
AATGTTAAACATTTCACACGTGCTTCTGGTATGGGAGATTATCCACGTGA
GGGTACCAATAGGGATGCAGAGGGCTTGACCGACTTATTTCTAGATCTTG
GTTTTGTCGTTGATCGTTTTGATAACCCCTCTAAGAAGGAGATCCTAGCC
ATTGTCAAAGCTGCTGCAAATGAGGATTATTCAAAACAAGCGTGTTGCGC
ATGTGCAATTTTGAGTCACGGCGAAGAAGGCATTATTTACGGTAACGACg
attttgtgaaaattcgtGACATCACCAAAATGTTTCGTACGCGTGGCCTA
GCTGGGAAGCCGAAATTTTTCTTATTCCAAGCGTGTCAAGGCTCAGAGTA
CATGAATCCGTACGATGCAGTGGACGGGAAACCCGGTCAAAGATTATCAG
AGGAAGAAATGGCATTGACGCTACCGTCAGAAGCTGACTTTTTGTACGCT
TACTCCACGGTGCCTGGCTACTACTCTTGGAGAAATTCTAGACGGGGATC
CTGGTTCATGGAAGCATTGGTTCAAGTTTTCCGTGAAAATGCTCATCGTA
TGGATGTCATGCGAATGTTGGTTAGAGTCAATGATATCATTTCATATCGC
AAATCGCGTACTGATGAAATAAAAACCGATAATAAACGACAGATTGCTTC
ATTGATcactcaaatgagaaaagatttCTTCTTGTTCCCACCATACGGAC
CTTTGAAACATGCTCAATAAACTCATGTTTTTGTGTAGGTAGTAGCTTCA
TTGCGTTTTATTATAACTTTGATGTTGAATTATctcttatattttttaaa
aattttgtataTAAAACTGGCACTCATCTTGGGTTCTAAAGACCCTTTAA
AAAATACTCCTGCTCAAGATGTTGATATACAATAAATTTGTATCAGTGCA
AAGGTCAGTGACTCCGGTAGTACTCCGGTGACGGAACACAGTTTCCGTGT
TCAATGATCTTGAATAAAAGGAAAACTCGTGAAGGTTTCTGCCTGAAAGA
AAACTTGATTAAAGTTGATTTCTTCTTCAGTGGGAAAAACTAACAAAATT
AACCAGTGGGATAGTCTTCCATTTTCAACCAAGCCTAGTTTTTTAAACTC
AGCTGATGATTGAGAAGAATAGGGGTATGgtttttgactgattttatgcg
ttaagattttttaatatttgaattTATCATTATTTACCATCATCAAAATT
GAGTATAATCGTTTATATTtaggaaagaatttttttgatatttataaaat
gtgtattttgacgaaatttgtaaaaggaaaaatattgattgcttttatat
ttcattgattgaaaattgttttgaaaatttattttgtac Run BLAST on NCBI transcript from alignment at scaffold_167:1042802..1048520+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049932 ID=TCONS_00049932|Name=TCONS_00049932|organism=Clytia hemisphaerica|type=transcript|length=5719bp|location=Sequence derived from alignment at scaffold_167:1042802..1048520+ (Clytia hemisphaerica)
gaattatttGTTTATATTCCCCTGGGGAGAACCCTTTTTCTTTATGGTTT
GAGGGGTCTCTCTGTAGTTAGTATAGTTTTGTGAAGTTAAAGAGTGTTAA
AGTTCGTTCAAAACACACGAAAATATGGATAAATTGtaagtttttgtatt
ttatgaCATACAAGGCCATATCCTAAAAAGGGAGATCTATCTATCTAAAA
GGATCTACACGTTTNTTTTTAAAATCAAATGTATGAAtggttcaattttt
aatttcagaaatatATATTTCGTACTCTACTGAGAGCCCGTTACTCGTAT
TATTTAAAAACAGAGACAAAGGATTGCAGGCTAGAAATCAGACAGACaga
caaaaattttccattgGCACAAGGCCCTATCCTAAAAAGGGAGATCTAAA
AGGATCTAAAAAGCTGAGAATGATTACTAAATTTATAATACGTAATAATA
AGTCTTTTGAGCAAAATTCAAACTTgaagaagaaaatcttttttttactt
tctcgCCTTTCCTTATTccaattttaagaatatttttcagaatttcctTC
ATATTCAATCTAGATGTAAAGAAGAAGTTGCTTCCTTCCTAgtcaaaaaa
agcaaaacgtaaACAAATTTGCAAAAAGGAAGTTCTTCAGTCTTCATAGC
TCTTGATCATTCATAGCAACAGTGTCTATACTatgttctttttctttcaa
gttTCAAATCGCTGTTCTTAGGTCTGTATTTTATAGaggaaagattaaaa
aaaaaattttttagcattttattTAGACTAATACATCTCCCTCTCACAGG
GTGGGATTTCATctgccagtgggggtaaaaataactaaccaaaactcgat
ggggattgatattctatatttttttatggctaaggatttgaattccattg
tttcctagccagaaaattcagtggggatggaaaaaagagcgcaatatttt
gcagtggggattTGCCTATATGACTATTTTCAACGGGGACAAAAataaga
gtataattttccaccagggacgatactttgaccaatttttccagtttgaa
gggtcccagtgggtctgtgagaagggggtgtactaAGTCATTCAAATTTC
CAGTTTCATTTTGCATTACATCTTCTTTAAAACCTCTAAAGCTTAGAACT
TTAGAATAGCATAGAAGGACAAATTTTCAGACCAGGAAGTTGCTAAGAAT
AATTAGCTCACCTGAATCAACGATTCTGCGAAATAGGAATGCCTATTTCT
TCGTAGAAAGTCTTATCTCTTCTAATTTGAGCGTTTTTTGTTAATGAACA
CTGCGAAATTGATTTGTTCAAAATTTACGGATTGTAATTGTCATTGAATT
TACTCTAAAGTTTAGCTTTTTATCGAATTTCGAGTTTTATGGCTTAAAAG
TCGTCTTTGCATGCACgaatttttttacttattttcccTTGGATACTgtg
taattcatgatattcgtgacgtaatgctttctacggaaagaccccggttt
ttgccagtagtggcaaattttatacaactttcgCCTagttaaatttgcca
ctactggttaacaccggggtatttccgtagaaaacattacgtcatgaata
ttatgAATAAAGTTTCAAATCTCATCGTGTGCCTTCTCTTTCTCAGAAGT
CAGTGTTCGTTTTTGTTGTTCCATTGTTTACTCaagtttcaaattttatc
ataacatTTAAACATTATTTTCACACGGAATcttaaaaattctttgaata
cCAATACTTTCTTTTGCTTTATTAAGGCTTTAAAATTAgatcaaattttt
ataattGTTTCTGAAAATGTTTCCATACCATTATTAGGACTCGAGTCTTT
GCCAATCGACATGATTTTGTCCAAGTAACTCTCTACCCTATCAACATTTT
CATGGTCTTTCTATTGACAATCATCATGTCTCAATTCTCTCCAAACATTT
ACTTATCAATACCAACTAAAGAAAAGTGGGAATTTTTAAACGATCTTATC
TCGCTTTTCATTGACTTATAAAGCCCCCTCTAAAACCAATTTATCAGTTT
ATATTCGAAACAgtttttagtttaactttcagTTATAAATAGCGAGTCAT
CTGTTGTGGCGTGGACTagttattacaattttagtcCAGTTTGGAATTTA
TTTTACTACTGTTTTCTTAAAGTTGTCTATTTGCCAGGTTAGTCGACCAT
TATATAGTTATTTAGTTATATACTAATCTCCTTCGAGCCTAATTACCGAT
GCACTTTCAAATTGTAACTTGATTAATTGTTCAATTGCTCAAAATATGTA
TCGATGAATAATTACAAGAAATGTTAGTTAAGATtatttatctatatatt
aaaCCTCTATTACCCAATTTACTAAGGAGATTTACCCCTGTCTCGATAAA
CCTTACTGATTTTCCATGACATACCTTTTATCTAGAACACTTTCAATAAT
TCAGGCTTCATTTCTTCCAGAAAATAACATTCTTATTTGTCTTCCCATTT
TTCAGTATTCAATGGATGAGTTAGACCGCCCTGGAGATATTCCACCTCCC
AAGACATTGAAAACAAACGCCCAACACACCATGGGAAACCGCCCTCCTGT
TGCAATGGATCAAAGCGATGCTATGGATGAAGTAGATCAAGTAGCGAAAC
CAACAATTTCACAAGGTAACTCATtataaaacactttttttataagaaca
tcaaatttCTTTGTAACCTTCGGACGCTCTTTACTTTTTTGGTTatgagc
ctaaaaatgtccCTAACATGTTCCTCATTTTATGAGTAGTGTTGTCTATT
TTTCTAggaaatcgggtgttttggaGTCCTCAGCCAAagcattaaaatgt
ttttaacttgttcttatcgAGGGCTgatgttcttgtatagtttgctCATA
TAAGAAACCGTTTATTTTATCCCATAACAGCTCATTAGGAAACCAAggta
cagtggaacctctaattagcggacagcatcggggaaaggggttagtgtcc
gctaattagaagtgtccgccttttagaatcttttgatctcggagctccaa
ttttgaaattaggccatcccagggtgtcgaaaatacaaaattggggtcta
aagtacttatctgcagacactaggccatagaagaacaagaaaaatgttat
taaaacgcaacaatttagtttttaactaataaaagaaaatccaGAAATAT
AACACCAAGATTGAAAATAcaattcgttgaatgggtctcagttttttttt
cgatttaggacgtctaattggagagctaaaataggggttttggccatttc
gtgcgaaaaaaattgtccgctaatcagagggtccgctaattgagtgtccg
ccttttagaaacttttttatgaggatttgactaggaaacgaccggggaaa
atgaaattgtccgctaatcagagggtccgctaattgagtgtccgcctttt
agaaacttttttatgaggatttgactaggaaacgaccggggaaaatgaaa
ttgtccgctaatcagaggtgcccgcattttagagtgtccgttaattagag
gttttactgtagtTTCATTCTCTGCTCTGAAGGGATTCGATGAATGTGAA
ACTTCCTTCGCTCTATATATAATTCAGATAGCGCGCTGCATCTACCAGTT
AAAATTGGTCTAGTTCTGATTGCTTGAGCTGAAGGGTGAATTCACgttct
ttgatattttcatcCAAACCATGATATTTTGCGAGCTCTGTATTTGTGGA
ATGTTGTAACTTGCTGCTATAAGCAAAGTAATTGTGCGAGAAATCAACCT
TAATAAAACCTTGTATTTATTTTAGCTGGGGAAAGTGGAACAACTGAGCG
CCCCTCGGTGATCATACCCGCCCCTGGTCAACAACAACCGCCCGACCTTG
AACGTAAAGAGTCCGAAATATTATCCAGTATCGCAATGGACGAAACACCA
CCCGTTTTCCCGACTAANGATATTATCTAGTATCACAATGGACGAAACAC
CACCCGTTTTCCCGACTAAGAAGCCCGAAAAACCGGTTGAAGAAATGCTT
TCAACTATTGACATTCCTTTCGACAATGATAAATTTCAACTAGAGGAGAT
ACGACCTGAATCACCTGGCGCTGATGCGACGGACGCCCCAGCTTCGAGCC
AAACTGATGGTCCTTTTAcgtcaacatttttcaaaccaGCGCAACCGATC
CAGCAATTAGTTCAACATCGTTCAGAACGTAAGAACAGAGAAGGGATTAC
CATCAAACATACCACTTATCACCCTAAACCTTTGGAAAAGAATTCCAAAA
TGAGTGACCACGCATCGAACATTTATTCTGATAGTTTTTACAAAATGGAC
TGTTTTCCACGTGGGAAATTAACATTGATCAATGTTAAACATTTCACACG
TGCTTCTGGTATGGGAGATTATCCACGTGAGGGTACCAATAGGGATGCAG
AGGGCTTGACCGACTTATTTCTAGATCTTGGTTTTGTCGTTGATCGTTTT
GATAACCCCTCTAAGAAGGAGATCCTAGCCATTGTCAAAGCTGCTGCAAA
TGAGGATTATTCAAAACAAGCGTGTTGCGCATGTGCAATTTTGAGTCACG
GCGAAGAAGGCATTATTTACGGTAACGACgattttgtgaaaattcgtGAC
ATCACCAAAATGTTTCGTACGCGTGGCCTAGCTGGGAAGCCGAAATTTTT
CTTATTCCAAGCGTGTCAAGGCTCAGAGTACATGAATCCGTACGATGCAG
TGGACGGGAAACCCGGTCAAAGATTATCAGAGGAAGAAATGGCATTGACG
CTACCGTCAGAAGCTGACTTTTTGTACGCTTACTCCACGGTGCCTGGCTA
CTACTCTTGGAGAAATTCTAGACGGGGATCCTGGTTCATGGAAGCATTGG
TTCAAGTTTTCCGTGAAAATGCTCATCGTATGGATGTCATGCGAATGTTG
GTTAGAGTCAATGATATCATTTCATATCGCAAATCGCGTACTGATGAAAT
AAAAACCGATAATAAACGACAGATTGCTTCATTGATcactcaaatgagaa
aagatttCTTCTTGTTCCCACCATACGGACCTTTGAAACATGCTCAATAA
ACTCATGTTTTTGTGTAGGTAGTAGCTTCATTGCGTTTTATTATAACTTT
GATGTTGAATTATctcttatattttttaaaaattttgtataTAAAACTGG
CACTCATCTTGGGTTCTAAAGACCCTTTAAAAAATACTCCTGCTCAAGAT
GTTGATATACAATAAATTTGTATCAGTGCAAAGGTCAGTGACTCCGGTAG
TACTCCGGTGACGGAACACAGTTTCCGTGTTCAATGATCTTGAATAAAAG
GAAAACTCGTGAAGGTTTCTGCCTGAAAGAAAACTTGATTAAAGTTGATT
TCTTCTTCAGTGGGAAAAACTAACAAAATTAACCAGTGGGATAGTCTTCC
ATTTTCAACCAAGCCTAGTTTTTTAAACTCAGCTGATGATTGAGAAGAAT
AGGGGTATGgtttttgactgattttatgcgttaagattttttaatatttg
aattTATCATTATTTACCATCATCAAAATTGAGTATAATCGTTTATATTt
aggaaagaatttttttgatatttataaaatgtgtattttgacgaaatttg
taaaaggaaaaatattgattgcttttatatttcattgattgaaaattgtt
ttgaaaatttattttgtac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049932-exon-scaffold_167-1491911889:1042802..1042936 | TCONS_00049932-exon-scaffold_167-1491911889:1042802..1042936 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1510915933:1042802..1042936 | TCONS_00049932-exon-scaffold_167-1510915933:1042802..1042936 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1575043694:1042802..1042936 | TCONS_00049932-exon-scaffold_167-1575043694:1042802..1042936 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1491911889:1045307..1045466 | TCONS_00049932-exon-scaffold_167-1491911889:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1510915933:1045307..1045466 | TCONS_00049932-exon-scaffold_167-1510915933:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1575043694:1045307..1045466 | TCONS_00049932-exon-scaffold_167-1575043694:1045307..1045466 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1491911889:1046627..1048520 | TCONS_00049932-exon-scaffold_167-1491911889:1046627..1048520 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1510915933:1046627..1048520 | TCONS_00049932-exon-scaffold_167-1510915933:1046627..1048520 | Clytia hemisphaerica | exon |
| TCONS_00049932-exon-scaffold_167-1575043694:1046627..1048520 | TCONS_00049932-exon-scaffold_167-1575043694:1046627..1048520 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1042802..1048520 + |
Blast
BLAST of TCONS_00049932 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.339e-53 Identity = 97/246 (39.43%), Postives = 150/246 (60.98%), Query Frame = 2
Query: 809 YKMDCFPRGKLTLINVKHFTRASGMGDYPREGTNRDAEGLTDLFLDLGFVVDRFDNPSKKEILAIVKAAANEDYSKQACCACAILSHGEEGIIYGNDDFVKIRDITKMFR---TRGLAGKPKFFLFQACQGSEYMNPYDAVDGKPGQRLSEEEMALTLPSEADFLYAYSTVPGYYSWRNSRRGSWFMEALVQVFRENAHRMDVMRMLVRVNDIIS-YRKSRTDEIKTDNKRQIASLITQMRKDFFL 1534
Y M+ GK +IN K+F + +GMG R GT++DAE L F LGF V +++ S ++ ++K A+ ED++ AC AC +LSHGEE +IYG D I+D+T FR + L KPK F QAC+G+E + A G ++ +P EADFL+AYSTVPGYYSWR+ RGSWF++AL + E+ +++M++L RVND ++ + +S++D+ K+QI +++ + K+ +
Sbjct: 60 YNMNFEKLGKCIIINNKNFDKVTGMG--VRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPIND--TDANPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYF 301
The following BLAST results are available for this feature:
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