TCONS_00049935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049935
Unique NameTCONS_00049935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049935 ID=TCONS_00049935|Name=TCONS_00049935|organism=Clytia hemisphaerica|type=transcript|length=1539bp
gttttttagcattttattTTACTGTGGTTTGCTTAAAAATTTTAGTCCTT
GCCTCGTCTTCAAACTTCTAAGTTATGGTATGAGATGGGTAACAAATTGA
TTCAAAAGAGTTTTCTTATCGTGCTTTCAAATAAAACATATGACAATGGG
GAAAATTAGAACCTTGCTTTGACTTTATTTGTTGTTCTCCTCTGCAAAGA
AATCTCATTGTACGTCTATAAACTTTGTGGTGGTTCGAGACATATGGGGT
TTTTGTTTTGCTCTTCAAACAGGGTTTCAAAGTTGTTGAATTCTTTTTAA
CACGCTTCTGGATGTATGATGGAAAAGAGAAACGACGTGAATTGATTGAC
GAACTGCGTAGTACGCATGCGCTACAACAAGCAGAGATCAGtttgaagaa
gaaggagaaacaATCTATCCTTCAATTACAAAGACAAGAAAAACTCACCG
AACATTACGAATCGAATGTGGATGAGATCATTGGTGAATTGGAAGGATCA
TGTTTGGGTGATATGCTTGACTTCTTGAGTAAAGAACTCGTCAGGTTCCA
GGAAGAGCGACGTATCCATGCATTTGCCATGCTCGCTGAGCGACAACGCC
GCATACGTGAAGCGGAAGAAAGTGGCCGAAGACAGTTGGAGGAGAGGCGA
AGACGTGAAGAAGATGAGATCTTTAAACAGGTGATTGGTGTTCATCAAGA
GACAGTAGAAAGCTATTTGACCAACATTATATCTGGAGCTATCGAGACAA
CAGCAGAGGATCAAGCAAGACGAGAAGTTGAAGAAATGGCCGCCAAAATA
AATCAAGTTGCTCACGACATGGAAGCTTCCCGAACGCAATTGCAAAGTGA
AGAAATCGTGGCAGaattagtgacgtcatttttattacctgAAGTTCAAA
AGATCAGCATGAGAGAAAATGTCAAGAGAAACCAGCGAAAGAACTTACTA
GCTGCTCACCGAATCATACACGATGAAGTTGATGACATTGCACCGGCAGA
AAAAATAATCGAGCCCGACGAATCGAAATCGAGGAGGAGCAGTGTGCGGA
GAAACAGTGTGAGAAGGAATAGCATTCTAAAGAATAGCGTGAATGCTTCT
ACAAAAACGACTGaaataaaggaagaaaaataaaagttcTATTACCTATA
tatttttataagttttttaTGTAAATTATTCCCTGACAACGATATGATGT
GTACATATATGATATGATGATATAGTGAACAAAATAATATACTAACGAAT
AAACAAGCTTACTCTCTTCTAGCCTCGTCTTGGGGGTAATCGAGGACGCT
tgcgtttttgaaaaatataactgaAACAGCTCTGAGATATCATTGATTAC
TTTTAGCACTAAAATATATAGCATGTGAAGGGTGAGAGGTGTTATATTTA
TATTTCTTTAACATTCTTTTTTGTTCTACTAGCCTAAGCGGGGTTACCAA
TACTACACAGGTTGACTTAGGGCACATCATTTTATAAAAGCACAAAGTCT
TTTTATGATAAGATAGTCTAATAATAAGACAGCGACGAG
Run BLAST on NCBI

transcript from alignment at scaffold_167:1072369..1077553+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049935 ID=TCONS_00049935|Name=TCONS_00049935|organism=Clytia hemisphaerica|type=transcript|length=5185bp|location=Sequence derived from alignment at scaffold_167:1072369..1077553+ (Clytia hemisphaerica)
gttttttagcattttattTTACTGTGGTTTGCTTAAAAATTTTAGTCCTT
GCCTCGTCTTCAAACTTCTAAGTTATGGTATGAGATGGGTAACAAATTGA
TTCAAAAGAGTTTTCTTATCGTGCTTTCAAATAAAACATATGACAATGGG
GAAAATTAGAACCTTGCTTTGACTTTATTTGTTGTTCTCCTCTGCAAAGA
AATCTCATTGTACGTCTATAAACTTTGTGGTGGTTCGAGACATATGGGGT
TTTTGTTTTGCTCTTCAAACAGGGTTTCAAAGTTGTTGAATTCTTTTTAA
CACGCTTCTGGGTGAGTAAAAACCTTTATAACTCTGGTCAAAAGAGAAAT
GCTATTCCTAATCCCACGCAAATTTCCTTATCTTGATACACAGTCGTCTT
TCATAGTTTTCTTTCCTCATCAATTTTGCTCGATCTTAAAATTTTCCCCA
ATTTTCCCCTTcgtttatattttttcttctgtattttcttattttttgag
gaaaatatCTTGAATTATTAAAAATGTTTGTCAGTCTGTATGTATCGttg
tattttttggacttgcTTTTGGAATTGATCCTTTTGATTTCGTACGCTTT
ACATAAGACgatcaaaattttgaacttcACATTTCCAATGAATATTTCTG
AAAGTCCTGAATATACAAAAGTTCGTCACTGTATCTTGAAATTATTATTC
ACTGAGACATATTTAAAGGTAtctcattttcaaaatcttctaCAGCATTT
TGATCTTCACTTTTTTCAATCTGTTTGAAATCAATCAGGTTCTTGGACCG
GCTtgtgatttttctaattttgaattttataagTAGGAAAATCATTAATA
TTTAGGAAAAATTATCCGACTGCaaggtcaatatttttttaagagtTGAG
TGGAACAATACTTTTCCATTTAAAATTGTCTGCAATACTTGTAGCAACAA
TATTCCGGACGCTTTCGTACATTATGTACGGCAGCTGCATGATTTTTACA
TTAGAAAAACTCTTTTGGATGGCGAAATTAGGaatatttaagaaaatttt
taagctTATAAAACCCGATTTTTTGACGATGTGTTCTTGTTTACGTTTGA
GTGATGAAGGCTCTAATGTACTTTCATACCTTCTATCCTTTACTTAGATG
TATGATGGAAAAGAGAAACGACGTGAATTGATTGACGAACTGCGTAGTAC
GCATGCGCTACAACAAGCAGAGATCAGtttgaagaagaaggagaaacaAT
CTATCCTTCAATTACAAAGACAAGAAAAACTCACCGAACATTACGTAAGT
TTCAAAATagcggagtctctttaactcgaacctctataactcgaatgtct
ccttaactcgaacctctataactcgagtgtctccttaactcgaacctcta
taactcgagtgtctccttaactcgaacatctataactcgaatgtctcctt
aactcgaacctctataactcgaatgtctccttaactcgaacctctataac
tcgagtgtctccttaactcgaacatctataactcgaatgtctccttaact
cgaacctctataactcgaatgtctccttaactcgaacctctataactcga
gtgtctccttaactcgaacatctataactcgaatgtctccttaactcgaa
cctctataactcgaatgtctccttaactcgaacctctataactcgaatgt
ctccttaactcgaactcTTAACTTAACTCTCCTTAACGTgcatttggagt
tatggtgacTCCACTGTAACAATACTCTGTCAATTTTTGACCTAAATTTC
TTTCCTGTGGAGAGTCTGAAACTGGAGGGTTAGATATAAGGTAGATATAC
TTCAAAGAAACTCCAAAAAGAGAAGCTTAGTTATAGCATTTTGAAGGAAC
TGTGTGCGTTTTCAGTCAGAACACAGCACAATTTACAACGCCAGTTTTCT
TGCTTTATTCACCATCTTTCGTGCCTTAGAGTATGCTTcatatttcaaat
atatttgGTTAAATCATTACATTTGATTGGATTATTTAATGATCATTAAT
TGTGCAAATTAGATGAACCGTATGACTTTTGTGGGTAAAAATAAAACTGA
GCTCAAGAATCACCATCTTTTATATGAGGCATTGTAGAAGATTTGGAATA
TATTCGTAAATGGTCGTGATATTCGGATGTATTTCATGACCCTCTGATTA
GAATCCTAAAGGAAGGAATCTAAAAGAACTCGAGTCCATAGTTTTTTAGC
ATTACCTATTGagtgattctaaaaactttgaaagtctTCAAATTCGCGTT
CTGTTCAACCGTTTGGAGAAGTTCAAGTAAAAACGAGTCCTTTTGAGGCA
TTTATTAGCTGAAAACTGGGGTGAACAACTTTttgattcgaattaaagag
aattacatttcattcttttctttttgtgatTGATTACAGGAATCGAATGT
GGATGAGATCATTGGTGAATTGGAAGGATCATGTTTGGGTGATATGCTTG
ACTTCTTGAGTAAAGAACTCGTCAGGTTCCAGGTAATAACATCACAACAA
TACTTCAGTTTGtgaaaaaagcatgaaacttgGCACAGGCATGCACAATT
GTATTCTGAACCAAAATATTATAAAGGTCGTTTCTACGCGAAATGAGAGA
ATTGAGTATGATATGGACCCCTGCAATAACTTCGCAAAATGATATAACTT
AACTGGTTTTTTCAATACATCACTTTCCATCAATCAGCTGTTCtaaaagt
gacgtaatgtcagaagacatcaCACGCATGGTTATACGAACTTCCAAATA
CTACCTAGTGATCATAAAAATTCCTCTTTTAATTTACCATTTGTATAACC
AGCATCATATAACAATTAGGAGTAGATATCCATGTACTTTATATGCTTTT
CCAAAGATAACCATAATGTgaccaaaaataaagttttttctgcTGCACGA
GAGCACGAATAATATCATAGCGGAAGTTTTTAGTGTTGCACATAATGCAT
AAAAAAATTGCTACGATCTCCTAACTCTCCTAAATGATGATGAATCTGCT
CCTTGTGCTGTGAAATACTCTAGATGAGTCCTTTCAATAGATAAGTCTTT
TTCCAAACAATGAGCAGATAGAgtcactaaaatattttttgtttatcatA
ATGCATTATACCAAGTGTAAATAAAAATCCCTTGTTTCGATTATTTTTAT
TTAGGAAGAGCGACGTATCCATGCATTTGCCATGCTCGCTGAGCGACAAC
GCCGCATACGTGAAGCGGAAGAAAGTGGCCGAAGACAGTTGGAGGAGAGG
CGAAGACGTGAAGAAGATGAGATCTTTAAACAGGTAAGATTCCAACGATG
TCGACGACTATAAGTctcaaatttataacaaaagtaCCCCGTCTTTTATA
CTGTATTGTTGGACTGAAGCTGTTTTTTCATAGATTTCAACTTTTGGAAC
AGATGATTAAAAATACTTCAAGTATCTCAAAGTTGCTTTAAACGAATGAA
TTTTTAACTTATTCTTGCCCACCCAGGTGATTGGTGTTCATCAAGAGACA
GTAGAAAGCTATTTGACCAACATTATATCTGGAGCTATCGAGACAACAGC
AGAGGATCAAGCAAGACGAGAAGTTGAAGAAATGGCCGCCAAAATAAATC
AAGTTGCTCACGACATGGAAGCTTCGTAAGTTTTCTTCTTATgatcaaat
tttcaactttttttaataatttaaacTCTTCAATCACACGTCTTGGATGT
TTGACTACCCGTTTCCCGCAAAATTAGAGGTTGAATTTTCCCACGACTTA
CGACGCTCATCCTGTGGATACATGTCACAATTTAATTTTGGCTTTTCATT
TTGTTTAGCCGAACGCAATTGCAAAGTGAAGAAATCGTGGCAGaattagt
gacgtcatttttattacctgAAGTTCAAAAGATCAGCATGAGAGAAAATG
GTAAGACGcaagtttctttctttttgaattgtgtcaaggccggtctccac
tttcgcgcgaaatgagcgacagtttttttcttaaccttttttgcctgaag
aaagaattacgtcataaaaaagttttgcgcgaacaaaaaaaagttgaggg
aagttctactttttttatccgttacgtcaatttcgaccaatggaattgct
tcatttttcaaccgaccaatgaccttacaaatagggtaaaaagtttttgc
ttgcccgagagtggagaccggcctttatacGTAAGTCGTCGGTTATAGAA
TGGTCTATCCAACCTTTGTTCACTTAAGTACAGAAACCTGGCGACATACG
CCAAATACCAAAAACAACGAAAGATTTTACTAAAGATTCTTTTCTTAGAC
CACATAGAATGctcgtttttttctttaaaaatgccCTAAAAGAATGAATA
TACAGAAAGCGTGGTATGGGAAAAACTTTCCAACAAAGTTCCCTCTTTTA
TTACAAATATAAATTTAGGTGGTGAAACAAAGGGAAACGATCCCTTTTTA
ATGATTTCCGTAGAATAATTTAATTCATGATATAgatctaagaacatttt
tcatttGTCTTATCTAGTCAAGAGAAACCAGCGAAAGAACTTACTAGCTG
CTCACCGAATCATACACGATGAAGTTGATGACATTGCACCGGCAGAAAAA
ATAATCGAGCCCGACGAATCGAAATCGAGGAGGAGCAGTGTGCGGAGAAA
CAGTGTGAGAAGGAATAGCATTCTAAAGAATAGCGTGAATGCTTCTACAA
AAACGACTGaaataaaggaagaaaaataaaagttcTATTACCTATAtatt
tttataagttttttaTGTAAATTATTCCCTGACAACGATATGATGTGTAC
ATATATGATATGATGATATAGTGAACAAAATAATATACTAACGAATAAAC
AAGCTTACTCTCTTCTAGCCTCGTCTTGGGGGTAATCGAGGACGCTtgcg
tttttgaaaaatataactgaAACAGCTCTGAGATATCATTGATTACTTTT
AGCACTAAAATATATAGCATGTGAAGGGTGAGAGGTGTTATATTTATATT
TCTTTAACATTCTTTTTTGTTCTACTAGCCTAAGCGGGGTTACCAATACT
ACACAGGTTGACTTAGGGCACATCATTTTATAAAAGCACAAAGTCTTTTT
ATGATAAGATAGTCTAATAATAAGACAGCGACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031650XLOC_031650Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049935-exon-scaffold_167-1491911889:1072369..1072679TCONS_00049935-exon-scaffold_167-1491911889:1072369..1072679Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1072369..1072679TCONS_00049935-exon-scaffold_167-1510915933:1072369..1072679Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1072369..1072679TCONS_00049935-exon-scaffold_167-1575043694:1072369..1072679Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1491911889:1073516..1073662TCONS_00049935-exon-scaffold_167-1491911889:1073516..1073662Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1073516..1073662TCONS_00049935-exon-scaffold_167-1510915933:1073516..1073662Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1073516..1073662TCONS_00049935-exon-scaffold_167-1575043694:1073516..1073662Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1491911889:1074808..1074900TCONS_00049935-exon-scaffold_167-1491911889:1074808..1074900Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1074808..1074900TCONS_00049935-exon-scaffold_167-1510915933:1074808..1074900Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1074808..1074900TCONS_00049935-exon-scaffold_167-1575043694:1074808..1074900Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1491911889:1075573..1075701TCONS_00049935-exon-scaffold_167-1491911889:1075573..1075701Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1075573..1075701TCONS_00049935-exon-scaffold_167-1510915933:1075573..1075701Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1075573..1075701TCONS_00049935-exon-scaffold_167-1575043694:1075573..1075701Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1491911889:1075895..1076043TCONS_00049935-exon-scaffold_167-1491911889:1075895..1076043Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1075895..1076043TCONS_00049935-exon-scaffold_167-1510915933:1075895..1076043Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1075895..1076043TCONS_00049935-exon-scaffold_167-1575043694:1075895..1076043Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1491911889:1076227..1076318TCONS_00049935-exon-scaffold_167-1491911889:1076227..1076318Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1076227..1076318TCONS_00049935-exon-scaffold_167-1510915933:1076227..1076318Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1076227..1076318TCONS_00049935-exon-scaffold_167-1575043694:1076227..1076318Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1491911889:1076936..1077553TCONS_00049935-exon-scaffold_167-1491911889:1076936..1077553Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1510915933:1076936..1077553TCONS_00049935-exon-scaffold_167-1510915933:1076936..1077553Clytia hemisphaericaexon
TCONS_00049935-exon-scaffold_167-1575043694:1076936..1077553TCONS_00049935-exon-scaffold_167-1575043694:1076936..1077553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1072369..1077553 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.8419	0.300877	0	0.263114	0	0.236374	0.488562	0.527786	0.879491	0.484088	0.208546	1.1947	1.78599	0.358986	0	6.43943	4.12205	6.68931	9.80291	19.505	18.9014	19.6165	14.8582	8.84851	8.51461	2.09567	2.66318	8.93453	5.76869
Blast
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BLAST of TCONS_00049935 vs. Swiss-Prot (Human)
Match: CFA91 (Cilia- and flagella-associated protein 91 OS=Homo sapiens GN=MAATS1 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 9.219e-62
Identity = 142/226 (62.83%), Postives = 173/226 (76.55%), Query Frame = 3 
Query:  312 MYDGKEKRRELIDELRSTHALQQAEISLKKKEKQSILQLQRQEKLTEHYESNVDEIIGELEGSCLGDMLDFLSKELVRFQEERRIHAFAMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXIFKQVIGVHQETVESYLTNIISGAIETTAEDQARREVEEMAAKINQVAHDMEASRTQLQSEEIVAELVTSFLLPEVQKISMRENVKRNQRKNLLAAHRIIHDEVDDI 989
            M++GKEKR ELI ELR+ HALQ+ E  +KK EKQ  L LQRQ  L EH  S V+  +  LEG  L DM DFLSKELVR QEERRIHAF MLAERQRR+REAEESGRRQ+E++R REEDEIFK+V+ VH  T+ SYL +II      TAE+QAR E+E+MA KIN +A++ME+ RT LQSEEIVAELV SFL+PEVQK  ++E V+  QRK++LAAH+IIH   + +
Sbjct:  348 MFEGKEKRLELIQELRTCHALQEDEKLVKKAEKQVTLALQRQRNLHEHKVSLVENHLAGLEGRALADMFDFLSKELVRLQEERRIHAFVMLAERQRRVREAEESGRRQVEKQRLREEDEIFKEVVKVHHSTISSYLEDIILNTEANTAEEQARAEIEKMAEKINDIAYEMESRRTYLQSEEIVAELVYSFLIPEVQKYFVKEKVRNAQRKHILAAHQIIHSYTESM 573
The following BLAST results are available for this feature:
BLAST of TCONS_00049935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CFA919.219e-6262.83Cilia- and flagella-associated protein 91 OS=Homo ... [more]
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