TCONS_00049939 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049939
Unique NameTCONS_00049939
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049939 ID=TCONS_00049939|Name=TCONS_00049939|organism=Clytia hemisphaerica|type=transcript|length=322bp
TCGCCTTTCCCCGAAGAATCATTCTTCCTTTTAAGCTCTTTTTTCGTGCT
GCGCATTATTCCGCACTTGGTTGGAATCAATAAAATCTCAGCAAATTTAA
CTATTTGCATAAGGTCCAACTTTGTTCGTCCACTTGCATCTCCCATCATG
GCGGCCGGACAGAAGAAGGGAAAAGTTGGTCTTACCCAAGAGCAAATCAT
CACAAAATTCAATCAAATGCGACAAGAACAGCGAATTGTTATTAATAAAA
TTAGTGAATTAGAAGCTGAAGTTAGTGAACACAGGCACAGCATGGTTAGG
AAACAATATCATACTCctggat
Run BLAST on NCBI

protein sequence of TCONS_00049939-protein

>TCONS_00049939-protein ID=TCONS_00049939-protein|Name=TCONS_00049939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
SPFPEESFFLLSSFFVLRIIPHLVGINKISANLTICIRSNFVRPLASPIM
AAGQKKGKVGLTQEQIITKFNQMRQEQRIVINKISELEAEVSEHRHSMVR
KQYHTPG
Run BLAST on NCBI

transcript from alignment at scaffold_167:1157087..1157499+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049939 ID=TCONS_00049939|Name=TCONS_00049939|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at scaffold_167:1157087..1157499+ (Clytia hemisphaerica)
TCGCCTTTCCCCGAAGAATCATTCTTCCTTTTAAGCTCTTTTTTCGTGCT
GCGCATTATTCCGCACTTGGTTGGAATCAATAAAATCTCAGCAAATTTAA
CTATTTGCATAAGGTCCAACTTTGTTCGTCCACTTGCATCTCCCATCATG
GCGGCCGGACAGAAGAAGGGAAAAGTTGGTCTTACCCAAGAGCAAATCAT
CACAAAATTCAATCAAATGCGACAAGAACAGCGAATTGTTATTAATAAAA
TTAGTGAATTAGAAGCTGAAGTTAGTGAACACAGGTACAGTAATtgtcat
ttttgctttaaaccTTTTTCAAGTCGTAACACATCTTAAGCCGGCCATGC
GACAAGTTTTTTTTACGACCCACAGGCACAGCATGGTTAGGAAACAATAT
CATACTCctggat

Coding sequence (CDS) from alignment at scaffold_167:1157087..1157499+

>TCONS_00049939 ID=TCONS_00049939|Name=TCONS_00049939|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_167:1157087..1157499+ (Clytia hemisphaerica)
TCGCCTTTCCCCGAAGAATCATTCTTCCTTTTAAGCTCTTTTTTCGTGCT
GCGCATTATTCCGCACTTGGTTGGAATCAATAAAATCTCAGCAAATTTAA
CTATTTGCATAAGGTCCAACTTTGTTCGTCCACTTGCATCTCCCATCATG
GCGGCCGGACAGAAGAAGGGAAAAGTTGGTCTTACCCAAGAGCAAATCAT
CACAAAATTCAATCAAATGCGACAAGAACAGCGAATTGTTATTAATAAAA
TTAGTGAATTAGAAGCTGAAGTTAGTGAACACAGGCACAGCATGGTTAGG
AAACAATATCATACTCctggaTCGCCTTTCCCCGAAGAATCATTCTTCCT
TTTAAGCTCTTTTTTCGTGCTGCGCATTATTCCGCACTTGGTTGGAATCA
ATAAAATCTCAGCAAATTTAACTATTTGCATAAGGTCCAACTTTGTTCGT
CCACTTGCATCTCCCATCATGGCGGCCGGACAGAAGAAGGGAAAAGTTGG
TCTTACCCAAGAGCAAATCATCACAAAATTCAATCAAATGCGACAAGAAC
AGCGAATTGTTATTAATAAAATTAGTGAATTAGAAGCTGAAGTTAGTGAA
CACAGGCACAGCATGGTTAGGAAACAATATCATACTCctgga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031653XLOC_031653Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049939-proteinTCONS_00049939-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049939-exon-scaffold_167-1491911889:1157087..1157370TCONS_00049939-exon-scaffold_167-1491911889:1157087..1157370Clytia hemisphaericaexon
TCONS_00049939-exon-scaffold_167-1510915933:1157087..1157370TCONS_00049939-exon-scaffold_167-1510915933:1157087..1157370Clytia hemisphaericaexon
TCONS_00049939-exon-scaffold_167-1575043694:1157087..1157370TCONS_00049939-exon-scaffold_167-1575043694:1157087..1157370Clytia hemisphaericaexon
TCONS_00049939-exon-scaffold_167-1491911889:1157462..1157499TCONS_00049939-exon-scaffold_167-1491911889:1157462..1157499Clytia hemisphaericaexon
TCONS_00049939-exon-scaffold_167-1510915933:1157462..1157499TCONS_00049939-exon-scaffold_167-1510915933:1157462..1157499Clytia hemisphaericaexon
TCONS_00049939-exon-scaffold_167-1575043694:1157462..1157499TCONS_00049939-exon-scaffold_167-1575043694:1157462..1157499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1157087..1157499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
77.5414	88.7789	46.5641	62.9433	30.4816	35.796	39.9574	50.6326	33.5972	22.2824	29.5792	32.8252	32.362	37.5111	33.6914	35.5822	39.8279	39.373	19.0219	22.3495	23.9787	13.7687	39.5944	32.3974	60.6701	66.1792	35.2981	24.8078	20.2096	19.5253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049939 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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