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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049949 ID=TCONS_00049949|Name=TCONS_00049949|organism=Clytia hemisphaerica|type=transcript|length=2627bpRun BLAST on NCBI transcript from alignment at scaffold_167:1248383..1262722+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049949 ID=TCONS_00049949|Name=TCONS_00049949|organism=Clytia hemisphaerica|type=transcript|length=14340bp|location=Sequence derived from alignment at scaffold_167:1248383..1262722+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049949 vs. Swiss-Prot (Human)
Match: FND3A (Fibronectin type-III domain-containing protein 3A OS=Homo sapiens GN=FNDC3A PE=1 SV=4) HSP 1 Score: 331.643 bits (849), Expect = 7.244e-97 Identity = 213/586 (36.35%), Postives = 318/586 (54.27%), Query Frame = 1
Query: 895 IILTWD--ECILNNS-------HLQGCLFDLQMSDTRNKYKSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKTAITLKWNAPISDGGSSITSYTLQWIKGHEQGQYSDLFTGLQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTSAGPPAAPEAPKSVDCGTNFIRLIWCEPDNNGAPVEE---YKLEMEDPNDGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMTLPEAPGKMEKPKVNGKPKTNSISIKWEPPRDSGGNEAISYILEVDDGK-GGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPPTCH-KAEPTSLQLDWDEPET-GGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQAGTSLWSPVSTLTTXXXXXXXXXXXXXXFKTPTNLRLDWVEPVLHGAEVTSYTVE-KLEDDSFHKVYQGTCCFCEIKRNLNPATHYYFRIQAHSTAGDSSYSEVFTVEMPPSVPGPVTEIKVI 2604
++LTW ++N L G + + KYKS++ G+ + ++L+P Y ++ A +N+ +G S+A TTL +P P+ R+ +TK ++TL+W AP SD GS I ++ L+W +G G++ + G QKQFK + KL P C FR+ A N+ G+S +S+ + TS P+ P +P G ++ L W +P +G P +E Y LEME+ GYGF KY GE +Y +NLRR+T Y F++ A NS+G S PS + + T P+ PG KP V GK ++S I W+PP+D+GG Y++E+ +G G + +Y G+ RE L PGC Y++RV S GQ S L T V P C PP + + +QL W P GG+ IS Y ++M+ + E ++VY G + C V+ LLPG Y F+++A N+ G +S +TTAP PPD P V+ ++ T +++W P+ +G +VT Y +E + S Y G EIK L+PAT YY R+QA S G +SEV PPSVPG VT ++ I
Sbjct: 282 VVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRIANRTKNSLTLQWKAP-SDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKIT-KLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKP--SGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIK-GLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGIVTCLQEI 862 HSP 2 Score: 183.726 bits (465), Expect = 1.554e-47 Identity = 150/587 (25.55%), Postives = 254/587 (43.27%), Query Frame = 1
Query: 862 PPKTMAESPYAIILTWDECILNNSHLQGCLFDLQMSDTRNKYKSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKTAITLKWNAPISDGGSSITSYTLQWIKGHEQGQYSDLFTGLQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTSAGPPAAPEAPKSV-DCGTNFIRLIWCEP-DNNGAPVEEYKLEMEDPNDGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMTLPEAPGKMEKPKVNGKPKTNSISIKWEPPRDSGGNEAISYILEVDDGKGGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPP--TCHKAEPTSLQLDWDEPETGGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQAGTSLWSPVST---------LTTXXXXXXXXXXXXXXFKTPTNLRLDWVEPVLHGAEVTSYTVEKLEDDSFHKVYQGTCCFCEIKRNLNPATHYYFRIQAHSTAGDSSYSEVFTVEMPPSVPGP 2583
PP+ + ++ L W N S +Q + + ++ + G F+ ++L P FRLSA + FS+ V T P+ P+ + + T ++L+W+ P SY L+ + + + G + + L T+ F+V+A N G S+ S+V+ T P P P ++ ++ W P DN GA + +Y +EM + ++G + Y G + C L Y R+ + G S S + T PG P++ G+PK I ++W PP GG+ Y +E+ + + +YQGS+ E T+S+L PG TY R+ + +K G G +S +T P P C+PP TC A T Q++W+ P + G ++ Y ++ EG + Y G + L P T Y+ ++QA + G +S V + T ++ + T L + W +P HG+E+ +Y+++ D V + T I NL P T Y RIQA ++ G +S + ++ P P P
Sbjct: 376 PPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCAPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKN-LRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSA--TCAQVNWEVPLSNGTDVTEYRLEWG-GVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGIVTCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYSID-FGDKQSLTVGKVT---SYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDP 954 HSP 3 Score: 147.517 bits (371), Expect = 5.769e-36 Identity = 156/583 (26.76%), Postives = 255/583 (43.74%), Query Frame = 1
Query: 940 QGCLFDLQMSDTRNKY--KSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKT-AITLKWNAPISDGGSSITSYTLQWIKGHEQGQYSDLFTGLQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTSAGPPAAPEAPK-SVDCGTNFIRLIWCEP-DNNGAPVEEYKLEMEDPNDGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMTLPEAPGKMEKPKVNGKPKTNSISIKWEPPRDSGGNEAISYILEVDDGKGGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPPTC------------HKAEPTSLQLDWDEPETGGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQAGTSLWSPVSTLTTXXXXXXXXXXXXXXFKTPTNLRLDWVE--PVLHGAEVTSYTVEKLEDDS--FHKVYQGTCCFCEIKRNLNPATHYYFRIQAHSTAGDSSYSEVFTVEMPPSVPGPVTEIKVIEQTSNSC 2625
+G + L+M + + Y K + G+ + L+ T+Y F++ A + + S+ V TT KP P V K + + + W+ P +GG++I Y ++ +G ++ +++G ++ +L PG RV ++ G S S+ + T A PP P+ I+L W P + G+P+ Y +EM P + Y G + +L Y+FRL A+N GF S T P P + + P+V + T + + WE P S G + Y LE G G + Y G + + L P TY RV + S G G +S ++ T P P TC H + T L + W++P G++I Y I G+ + + G + L P T Y ++QA N G +S + L T P PPD P + V+F + NL+L W E P + Y ++ +ED + F +Y+G C +++R LN +T Y F IQA + AG+ S+ + P SVP + K+ + + C
Sbjct: 497 EGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATRE-HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEM-SPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCA-QVNWEVPL-SNGTDVTEYRLEWG-GVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSVPGIV---TCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYSIDF-----GDKQSLTVGKVTSYIINNLQPDTTYRIRIQALNSLGAGPFSHMIKLKTKPLPPDPPRLECVAF-SHQNLKLKWGEGTPKTLSTDSIQYHLQ-MEDKNGRFVSLYRGPCHTYKVQR-LNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHIC 1063 HSP 4 Score: 127.872 bits (320), Expect = 6.040e-30 Identity = 128/495 (25.86%), Postives = 215/495 (43.43%), Query Frame = 1
Query: 856 CIPPKTMAESPYA--IILTWDECILNNSHLQGCLFDLQMSDT-RNKYKSIFSGQSSTFRASELQPGTQYFFRLSASWNNKRGPFSDAVSCTTLQTKPTTPSMLRVIQKTKTAITLKWNAPISDGGSSITSYTLQW--IKGHEQGQYSDLFTGLQKQFKHSHKLPPGTQCSFRVLATNEIGSSDWSDVMRCLTSAGPPAAPEAPKSVDCGTNF---------------IRLIWCEPDNNGAPVEEYKLEMEDPNDGYGFISKYHGEKTSYCCQNLRRNTHYTFRLSASNSQGFSRPSPPISYMT------LPEAPGKMEKPKVNGKPKTNSISIKW-EPPRDSGGNEAISYILEVDDGKGGQLNPLYQGSDREFTLSNLKPGCTYKIRVVSESKAGQGTWSPILQASTLPVCPRNCQPPTCHKAEPTSLQLDWD--EPETGGAKISNYVIQMASSSEGEFKQVYTGCKRGCRVTELLPGTDYHFKMQATNQAGTSL 2253
C+PP+ P A I L W +++ C + ++MS +++ + ++ G S L PG Y FRL A+ GPFS+ TT P +V ++ T + W P+S+G + +T Y L+W ++G Q Y GL + K L P T RV A + +G+ +S+V+ C+T P P V C + + W +P ++G+ + Y ++ D S G+ TSY NL+ +T Y R+ A NS G + P S+M LP P ++E + + ++ +KW E + ++I Y L+++D K G+ LY+G + + L +YK + + ++AG+G S +T P + P K ++ W+ +P G I Y +Q+ + EFKQ+Y G R + L +Y F++ A Q SL
Sbjct: 665 CLPPRLQGR-PKAKEIQLRWGPPLVDGGSPISC-YSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRSATCAQVNWEVPLSNG-TDVTEYRLEWGGVEGSMQICYCG--PGLSYEIK---GLSPATTYYCRVQALSVVGAGPFSEVVACVT------PPSVPGIVTCLQEISDDEIENPHYSPSTCLAISWEKPCDHGSEILAYSIDFGDKQ------SLTVGKVTSYIINNLQPDTTYRIRIQALNSLG----AGPFSHMIKLKTKPLPPDPPRLECVAFSHQ----NLKLKWGEGTPKTLSTDSIQYHLQMED-KNGRFVSLYRGPCHTYKVQRLNESTSYKFCIQACNEAGEGPLSQEYIFTTPKSVPAALKAPKIEKVNDHICEITWECLQPMKGDPVI--YSLQVMLGKDSEFKQIYKGPDSSFRYSSLQLNCEYRFRVCAIRQCQDSL 1128 The following BLAST results are available for this feature:
BLAST of TCONS_00049949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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