TCONS_00049991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049991
Unique NameTCONS_00049991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1802

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049991 ID=TCONS_00049991|Name=TCONS_00049991|organism=Clytia hemisphaerica|type=transcript|length=1802bp
gNCAAAACGATCATCATCAACAACCTATCCAACGTGGTGGATACCGGGGC
GGTTATCGTGGTAGGGGTGGTTTCAGAGGCGGTTATAGGGGTGGATTCAA
TCAAGCTGAGAGTAATTTTCATGTCCACCCAAATCCGCCTACTGATTGGC
AGCCACATGGCGAATACTTTCTTCCCGAATTGGATCCAAGAAATTGTAAA
TATTATATCAAAACTGGAGCTTGCCGTTTTGGACAGAGATGCTCAAGAGT
TCATTTGAAGTATGACAAAAGTCCAACAGTCATGATACAGAATTTCTTTC
AAGATGCAAGATTATCTATGCCTGTATTGAACGAGAAAAATAATGACGCA
GATTTTGATTATGAGGAACTGGATATGATTCGTGATTTCGAGAAATTTTA
CGATGATGTCATCCAAGAATTCAGATCAGCTGGTCAAATCGTTATGTTTA
AGTGCTGTCAAAATTACCTTGCATATTTACGCGGCAATGTCTACGTACAA
TATAAAACAGCTGAAGAGGCAAAAGAAGCGATCAAATTATTCAATGGAAG
ATATTATGCTGGACGTAGACTGACAATCGAACAGAGCCCCATAACCAATT
GGAAGTCTTCAATTTGTAGATCGTTCGACAAAAGACTTTGTCCGCATGGC
AAAGTTTGTACTTTCCTACATGTTTTCCGCAATCCAAAAAACGCATACTC
CGTTCCAAATCGGACAGATTTTGATCCGGAACGCGCCTTTCGATCGGGTG
GTTACGATCCACGTTTCGTCAACCCCAAACATCCAGTTTTCCAATACTAC
AGTCAGCGTGATGCGTACGGATATCGGAGCTCGGACATCAGTAAAGGGAA
ACCGGCTGATTATGGCTATGGTCGTAACACATGGGACAGTTTGAACAATA
AAAGATCAAGATCGCGTTCAAGGGATCGAAGAAGGCGTAGGTCAAGATCA
CGTGGCCGATCTCGCAGTAGAAGTCGTTCGTCGAGATCCTATTCTCGTAG
TCGTTCTCGTTCTCGCTCAAAAAGTCGTCACCGACATCGAAGAAGTCGCT
CACGAAGTCGTTCAAGGAGTCGATCACGGTCACGTAAACGACGCGACTCT
AGAAGTTCGTCAAGGAGCAGTCATCGGAAAAGAAGTCGAAATGATTCCGA
AGTTTCTGATACGTCTACTGATTGGTCAGATCTCAGTGATGACCCTATCA
AGTGATCGAAATGTCGAGGTGTGATTGGTTTATTCTGATATCGCGTGGTG
AAATAATTGACTCTGTTTGGATGAAACATTTCATAAGATCTTTATATGCC
AAGAACAGAACATTATTTTGACATTATTGAGGAATTGATTTGGATCGAAG
TTAGAACTTATACAATCAAAAGCTATGAGATGGATAGAACATTCCGGTTT
TAACGTCATCAAGGGGATAGGTACTGACGTCAATTATACATTGTTGATGC
TCAATCATTGATGATTACTCGAGCTAATTAAGTAACCATAGCCATGTAAA
GTATAGTCGAATATCCAGGAGCGTAGTTGCTTGATAAATTTGTGGTGAAA
TTGGTGATTGTCTGAAATTTCGATTGTTGTGctccttttaaaagaaaaaa
atgtaagtTCGTGAAAAGGTATGCGAGcgtatcacagaaaaaaatctgaa
aacacaTTTATGTGATACCATAATGTGTTTCCCATTGATTCCACCCCGGA
AATGGACTGTTCCGTTAAAAATCCATACAGCAGGGTGCACAAACCTATTC
CTGTCAAAAACAAATTCTTTGAAATATGTGGATACcctgaaaaataacaa
aa
Run BLAST on NCBI

transcript from alignment at scaffold_167:1706291..1715786+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049991 ID=TCONS_00049991|Name=TCONS_00049991|organism=Clytia hemisphaerica|type=transcript|length=9496bp|location=Sequence derived from alignment at scaffold_167:1706291..1715786+ (Clytia hemisphaerica)
gNCAAAACGATCATCATCAACAACCTATCCAACGTGGTGGATACCGGGGC
GGTTATCGTGGTAGGGGTGGTTTCAGAGGCGGTTATAGGGGTGGATTCAA
TCAAGCTGAGAGTAATTTTCATGTCCACCCAAATCCGCCTACTGATTGGC
AGCCACATGGCGAATACTTTCTTCCCGAATTGGTAAGTGAGTTTtgtttg
aatttaaaatttatttcgaaTCTACTATGAATTATGTCCATATGGAGTGT
ATTGGCCTCTTTTAAACTATGGATGCTTGAATCTGCTTGAATTAGGTTAT
CTAAAGTCctaatgtaatttttttatttcatctaCAGGATCCAAGAAATT
GTAAATATTATATCAAAACTGGAGCTTGCCGTTTTGGACAGAGGTTAGCA
CAGAAAATTACTCATTCTAATCTAACCCACCTCAAATACTTTAAAGTTCt
tttgatataatatttttttgacttaAATACAAGGTCCCAATCAAGACACA
AGCAAACATTTTATAAATAGAGTAAATAAGGTAACTTAGTATTTGCAGGT
ATTTTGTTGACACTGATATCATAAAATTTATAACATTTCTGTTTTACATT
AACACTCCTGTAGATGCTCAAGAGTTCATTTGAAGTATGACAAAAGTCCA
ACAGTCATGATACAGAATTTCTTTCAAGATGCAAGATTATCTATGCCTGT
ATTGAACGAGAAAAATAATGACGCAGATTTTGATGTGAGtaagctaaaaa
tattttaaccaCCATGACATAATGTCCTTATAGGCCGGTTCCCctacttg
aaaaaatttcctttgCTCCTTTTAGTCTCCCCCtaggatttcaaaaaaaa
gtccAACCTGGGGAGAGTACACTATTATGGGAAAAATGAGGctgaaaaaa
taggaaaaatccaccaaaatataaaaaaaatgtgtatttttcgTATCATT
TTAGTATGAGGAACTGGATATGATTCGTGATTTCGAGAAATTTTACGATG
ATGTCATCCAAGAATTCAGATCAGCTGGTCAAATCGTTATGTTTAAGGTA
TATACAGGTTTATATACTTCTTCAGTTCATTGCTTCTAAGAAtttgcttt
tattttattttccataGATTTCACTATCTCTTTTAAAGTGGTGATTGTCC
ACTCTATATTCATAAGGAGAGACGGAATTATAActctcttttaatttctt
tttatagTGCTGTCAAAATTACCTTGCATATTTACGCGGCAATGTCTACG
TACAATATAAAACGTAAGACCTCTATCATTTTGTtgtactttttcacttt
ttatcaagcttttgtTTTCTAgttatttggtttggtttttaagaagaaaa
tgaaatgcAAGTTCCGTTATTAGTTATTAGAAACTTTCATTCTATTCTCT
TTTTGCGTAGACCACTCTCGGAGATTATCTTATGTTTTAAGGTCTGGGGc
cacttgaaacatttttcatcaaatagaaACAGTTGAAAACTGAAACActt
aaaaaattcactttgatgaaaaagttgctagtGGTCACACCTCAAATGAC
AGAACGAGAAGTTATACATATATACGAATCGATTTCTTGAACAGTTTATG
TAGACAGAAACAGTTGATGCtagtcaaaaatagtgtgacatttttatttc
tccaaaaaaacaccaaatttagaattttgtcAATAACTTTCTCAAATCTT
GGTATCCTGAAATAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTACCTTGCATTGAAATAAACG
TTGTTGTCAACctcaaaacttgctcaaataaCAGATATTTCcttggaaaa
agatttttagatgGTCAATAATGATATTTAAGTCATCATATTTATCTACC
TTTGTCAAAATTATGCACAAAACTAATGTTAACCTCATTTTTGGAGCCAT
TTAATAAATGTCAACCTCAAATAAAGCCCTTCATAGCAATTTTCAACCCT
TTGAGATAATTTCAGAGCTATAACATATCCAAAATCTAATTCAAAAGTCA
ACTTACAGGGTGTTAAAGAACCCTAACAGTGTCAACCTCAGGTCATGTTA
ACCTCAACTTTTGCTCCCACTTCAAAAAAACGTATCTCGAGTTAGGGTAA
ACCTCATAAAAAGATACTTATATGCCTAGAAAGCAAAATTATTCAGCCTA
ACCATACTAAAGTTTCAGTTGTCAACCTCAAACTTAGCACATTTTATAGG
GCTAAATGTAAACCTcaacaaaaatgtcacaaataccCCCTCTATTTTTG
ACCAGCATCAGTTCCATTGTATCATTGTAGTTGCGTGATGGTGTTAAAGA
TTGTTTTGTTGAGATTTCCCTGAGGCGGGTGGGCCACTCGAAACAAAGTT
TAGCAATTGAACTGCAACTTGAAATGAAATTTGTTTCAAGTGGCCCCAGA
CGTTTACCacagaatttttctaaatcgagTGTACACTCTCAATGGAATAA
CTCTAATTACGTTCACATTGTTTCCACATGGTAGAAAAAAGGAGTTATAA
TACTTAAAATGAATCGACCGCAAAACCATcaaacaatagaccttttcata
aattacgtcacgaacatcacttgcctcgtattcaaacagtTTCCATGGTG
ATCacatcccttgagacattaaatgttttttttatgaatagaaagtagtt
gtaataatatccgctgggagttaatcaccatgacaataatttcacaacga
ggcaagtgatgttagtgacgtaatttatgaaaaggtctattaaatcATAA
TGAAAGTTGGTTCTTCTGTAGGCTGTTAATAGAATTATTTCTTCTACTTA
CAGAGCTGAAGAGGCAAAAGAAGCGATCAAATTATTCAATGGAAGATATT
ATGCTGGACGTAGACTGACAATCGAACAGAGCCCCATAACCAATTGGAAG
TCTTCAATTTGTAGTAAGTACATTATGTTGTccagaaacaaatatttttc
caatcATTCCTTTTCCTTTAGAGAGCCTTTAACCCTTAGACCACGAGGGA
CACGTATATGcgtccaaaacaagccaaaatactgAGTCTTAGACTTGAGG
CCATatagctcctgaccacttgatttaaaggggcataaaccgaacggttt
tagaaagagtataaaaatagctttctaatggtaccaaaaccatcttctaa
atcaaaagctacaaggtttgagtttcaaaaagaaaagtttgaaaaatttc
aacttttaagcTATTGTCTTAACCCTTTGTGCGcgctgtttttttgaaaa
agttgaaatttttcaaacttttctttttgaaactcaaaccttgtagcttt
tgatttagaagaaGACATTTTGGAAGTTGAGTTCTGAACGGTTTTTATCC
ACTATATTTCCCTATTTTTAGGATCGTTCGACAAAAGACTTTGTCCGCAT
GGCAAAGTTTGTACTTTCCTACATGTTTTCCGCAATCCAAAAAACGCATA
CTCCGTTCCAAATCGGACAGATTTTGATCCGGAACGCGCCTTTCGATCGG
GTGGTTACGATCCACGTTTCGTCAACCCCAAACATCCAGTTTTCCAATAC
TACAGTCAGCGTGATGCGTACGGATATCGGAGCTCGGACATCAGTAAAGG
GAAACCGGCTGATTATGGCTATGGGTAAGTAGAAAAATGCCttctaaatt
tcaaataaaattaagttttctgttttctgcGTGTTCAGGCAAAGCCAAAA
ATGAGGTCTATTATATTACACCGGTTCTTTCACCAGCCTCATCCAATCTA
TCAATAAGCCATAAATAAGCAGGTGGACCCCGAGTTACATATCCCTCGAC
AGACCaatctttctgtaaaaaaatgttttttacacTACTTAGTATGCAGT
CTCGACCGCGGTCGAATAATGATGAGGCCGACTATGtatgaaattaaaaa
tcttttagGGGCTGCGTTAAATTCATTTATATATGATCTTCCTTATGTCG
TGATCTTCTAAATTtaagtttaatttttatttaGTCGTAACACATGGGAC
AGTTTGAACAATAAAAGATCAAGATCGCGTTCAAGGGATCGAAGAAGGCG
TAGGTCAAGGTATGTTAATTGAATTAATAAATTTAGAATTGCACGCACAC
TCGAGATTTATGTAGTCTAGTGTGTTAGGTGACTAAATTTAAGAGAGATA
GTAGGGTGTGGATACTAAGTTATACAAACTAACATTGGGCATGGGGTGGA
GaatattgtccgggggtagtgaaaaatctacaaaattttcttGTCAAAAC
TTGCTCAGTTTGGGagtaattttgattttccagggggtcaactggtGTTC
GGGGGgaggggttagacctgctgtccaaGAGATCAAAAGTCACAATATTA
ATTCGTTCGGAgggtaaatttccaaagaatgttatatccttcacccccac
catattcaattttttccttGAAGAGTCCATTATTCCGTATATCAACTTCA
CCATGGTAcgatataaaaaaacgtaaaatgaTTCCACGTCTACGATACAT
GAGTTTTTTGGTGCCCTTGTAATTTCAATCCTTGTAATATAAACATGCTC
ATCTATCTATGTAGATCACGTGGCCGATCTCGCAGTAGAAGTCGTTCGTC
GAGATCCTATTCTCGTAGTCGTTCTCGTTCTCGCTCAAAAAGTCGTCACC
GACATCGAAGAAGTCGCTCACGAAGTCGTTCAAGGTtcgttttcaaactt
tttacaATTTCTGTACTTATTGACATAAATTCATATCGCAGCGTGGCTAA
TTTtccaaattcatgatattcctGACGTAATATTTTAATCAGAAGCACCT
ACAGTCCGGGAGTTTGccactaaagtctattcacgataagtgtgcactct
tttttcttttacccataacttttgaaggaattcttcaatctttataaatt
tggtatcgttggagagatatttgtgagtggaacaatttgaaataaaaaag
tctttaaaaaaattctaaaaacgaagatgaaaacaaAGGACAaagaaatg
aagatcttgtagaaaagtactttcattttcactggagagattctttgatc
ttaggaggtcatcactgtgaagaaatttcactaaaatatttattcattat
aaagttatgatacaaacagcagaaaacagcgtttttagacgtcaatcagc
ttataactttgtttgatatcttttgactgaatgattatttttgagaaatt
ttttcacagtgatgacgttcgatgatcaaggattcacttcagtaaAAATG
ATAGttgtagcacttttctacaagatcttcatttttgtcttcttcatttt
catcttcatttttagaatttttttaaagatttttggacctacctccgggt
accccggtggaggttctataaattaacccatgtccgtccgtccgtccgtc
tgttaccagcttttctcaggattggctcattagttttttctgattttttg
cacaatgatgcaaaatggcaatgcccagaacgtgacggagcccgatcttt
gagaagaaatttatttgggcaaatttgggccaaaaactacctaaaaatag
ggttttttggactttgtgcaaaatcctgtcattacttttttctgattttt
ggacctaccttggaggtcctataaattaaccgatgtccgtccgttcgtcc
gttcgtccgttcgtccgttcgtccgtccgtccgtccgtctgttaccagct
tttctcgagattggctcattagtttNNNNNNNNNNNNNNNNNNNNNNNNN
Ntagttttttctgatttttggcacaatgatgcaaaatggtaatgcccaaa
atgtgacggagcccgattttcgaaaaaaaatcatttccggccgaaaatgc
cggataTATGCcgtaaaaaccggttttttggcgttttctcgagatttcat
cattagttttttcagattttttgcacaaagatgcgtattagcaatgcccg
aaacatggcagagtccaatttttgagaaaaattcttttccggccgaaaat
gccggaaatataccggaaatcgccttttttgcagattttcaacggacttt
ttccttataattgattgttttttctcacaaaaacattgttaatagcaatg
tccacgatcaagcatggttcaattgtcaataaaactgatttttgaagccg
gaactttctaaaaatcgccggaacagccgattatcgccggaaaaacggta
tttcttgaatttctcgagctgtactttatatttttttatgaaattttgca
cactgatataaaatgacaatacctaaaaagtgatggagcccaattttcga
aaaatatgccggataaactgtttttttggcattttctcgagattttatca
ttagttttttctgattttttgctcaaagatgtgtattaatattgttcaaa
acatggccgagtttgatttttgaggacattttctttccggccgaaaatgc
cgtaaatatgccggaaatcgccgtttttctggattttcattggacttttt
ccttacaattggttgttttttcattcaaaaacattNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaaagacagtatttcttgaatttct
cgagctgtactttatatttttttatgaaattttgcacactgatgcaatat
gacaatacctaaaatgtaacggagcccgattttagaaaaacatctttttt
cggccgaaaatgccggaaatatgccggaaaaatcgtttttttgacatttt
ctcgaattttctttttttgttttttctgatttttcgcagaaagatgcgta
ttcgcaatgctcaaaacatggctgagttcgatttttgagaaattttcttt
ttcggttgaaaatgccggaaatcgccgtttttgCAGATTTTCATTAGATT
TTTTCCTTGTATTTCTATGTTTTTCACACaaaaacattattgataacaat
gctcaccatcaagcatgattcaattgtcgataaaactgatttttgcgacc
agaactttctatttatttttcccctacaacccttctctctccccccatca
acaatcaatgatgaatttattgcgttatgcattttcgctaaacgctatat
tttttgactgtttttttgactgatttttttatcctcgcattgctatccaa
ctttcatcatcaggtaggtccattcagcatctagcttgtttgtacaaaga
tggagggcaagattctctaaagaatggctgaagtggtttttcccggaaaa
ttcttattcgccttaaaaaacggatttttgtattttggggaaattccctt
taaccgataagaaaatatagcttttctcaaagttgactcgttattttttt
ctgattttttgcacaatgatgcaaaatggcaatgcgtaaaatgtgacgga
gcccgatttttaaggaaaatttttttgggcaaatttgggcaaaaaacagc
tgaaaaggttttttgggcctgaatggtttaagtgattttcgtatttgggg
aaattcctttttaccattttacattattcaacacacaagctttatttttc
cattctgaatttttgtacaattattgtcacttttttcttattttcatctg
atgttaatcattaggtaggtccattcagcatgttgcttgttttatttcaa
attgttccactcgctAATATCTTTCTAATGATACCagatttataaagatt
gaagaattctttcaaaagctataggtaaaaaaaaaagagtgcacacttat
cgtgaatagactttagtagtTTAGTAGCTAACATGCGGtctttttgggtg
cttccgtataaaacattacgtcatgaatatcacaaTTATGTTAAGCAAGA
TTCTTTGAGTTACTGAATGACAGGACGTcatatttatttgattttctttc
cTCTCTCCAGGAGTCGATCACGGTCACGTAAACGACGCGACTCTAGAAGT
TCGTCAAGGAGCAGTCATCGGAAAAGAAGTCGAAATGATTCCGAAGTTTC
TGATACGTCTACTGATTGGTCAGATCTCAGTGATGACCCTATCAAGTGAT
CGAAATGTCGAGGTGTGATTGGTTTATTCTGATATCGCGTGGTGAAATAA
TTGACTCTGTTTGGATGAAACATTTCATAAGATCTTTATATGCCAAGAAC
AGAACATTATTTTGACATTATTGAGGAATTGATTTGGATCGAAGTTAGAA
CTTATACAATCAAAAGCTATGAGATGGATAGAACATTCCGGTTTTAACGT
CATCAAGGGGATAGGTACTGACGTCAATTATACATTGTTGATGCTCAATC
ATTGATGATTACTCGAGCTAATTAAGTAACCATAGCCATGTAAAGTATAG
TCGAATATCCAGGAGCGTAGTTGCTTGATAAATTTGTGGTGAAATTGGTG
ATTGTCTGAAATTTCGATTGTTGTGctccttttaaaagaaaaaaatgtaa
gtTCGTGAAAAGGTATGCGAGcgtatcacagaaaaaaatctgaaaacaca
TTTATGTGATACCATAATGTGTTTCCCATTGATTCCACCCCGGAAATGGA
CTGTTCCGTTAAAAATCCATACAGCAGGGTGCACAAACCTATTCCTGTCA
AAAACAAATTCTTTGAAATATGTGGATACcctgaaaaataacaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031671XLOC_031671Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049991-exon-scaffold_167-1491911889:1706291..1706472TCONS_00049991-exon-scaffold_167-1491911889:1706291..1706472Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1706291..1706472TCONS_00049991-exon-scaffold_167-1510915933:1706291..1706472Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1706291..1706472TCONS_00049991-exon-scaffold_167-1575043694:1706291..1706472Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1706628..1706683TCONS_00049991-exon-scaffold_167-1491911889:1706628..1706683Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1706628..1706683TCONS_00049991-exon-scaffold_167-1510915933:1706628..1706683Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1706628..1706683TCONS_00049991-exon-scaffold_167-1575043694:1706628..1706683Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1706904..1707024TCONS_00049991-exon-scaffold_167-1491911889:1706904..1707024Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1706904..1707024TCONS_00049991-exon-scaffold_167-1510915933:1706904..1707024Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1706904..1707024TCONS_00049991-exon-scaffold_167-1575043694:1706904..1707024Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1707245..1707337TCONS_00049991-exon-scaffold_167-1491911889:1707245..1707337Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1707245..1707337TCONS_00049991-exon-scaffold_167-1510915933:1707245..1707337Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1707245..1707337TCONS_00049991-exon-scaffold_167-1575043694:1707245..1707337Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1707498..1707553TCONS_00049991-exon-scaffold_167-1491911889:1707498..1707553Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1707498..1707553TCONS_00049991-exon-scaffold_167-1510915933:1707498..1707553Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1707498..1707553TCONS_00049991-exon-scaffold_167-1575043694:1707498..1707553Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1709744..1709853TCONS_00049991-exon-scaffold_167-1491911889:1709744..1709853Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1709744..1709853TCONS_00049991-exon-scaffold_167-1510915933:1709744..1709853Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1709744..1709853TCONS_00049991-exon-scaffold_167-1575043694:1709744..1709853Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1710312..1710564TCONS_00049991-exon-scaffold_167-1491911889:1710312..1710564Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1710312..1710564TCONS_00049991-exon-scaffold_167-1510915933:1710312..1710564Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1710312..1710564TCONS_00049991-exon-scaffold_167-1575043694:1710312..1710564Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1710925..1710999TCONS_00049991-exon-scaffold_167-1491911889:1710925..1710999Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1710925..1710999TCONS_00049991-exon-scaffold_167-1510915933:1710925..1710999Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1710925..1710999TCONS_00049991-exon-scaffold_167-1575043694:1710925..1710999Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1711505..1711624TCONS_00049991-exon-scaffold_167-1491911889:1711505..1711624Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1711505..1711624TCONS_00049991-exon-scaffold_167-1510915933:1711505..1711624Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1711505..1711624TCONS_00049991-exon-scaffold_167-1575043694:1711505..1711624Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1491911889:1715051..1715786TCONS_00049991-exon-scaffold_167-1491911889:1715051..1715786Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1510915933:1715051..1715786TCONS_00049991-exon-scaffold_167-1510915933:1715051..1715786Clytia hemisphaericaexon
TCONS_00049991-exon-scaffold_167-1575043694:1715051..1715786TCONS_00049991-exon-scaffold_167-1575043694:1715051..1715786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1706291..1715786 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.8865	26.4377	12.466	9.77392	48.8128	37.6439	36.1003	40.1425	26.3902	28.5911	26.9306	22.5996	16.0224	17.2091	17.5568	20.6806	27.4216	24.7715	10.5866	15.1596	20.236	22.1889	27.2257	23.8677	16.9306	19.9411	13.5483	10.7148	16.4703	19.2013
Blast
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BLAST of TCONS_00049991 vs. Swiss-Prot (Human)
Match: U2AFM (U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 OS=Homo sapiens GN=ZRSR2 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 1.174e-49
Identity = 102/258 (39.53%), Postives = 145/258 (56.20%), Query Frame = 3 
Query:  129 PNPPTDWQPHGEYFLPELDPRNCKYYIKTGACRFGQRCSRVHLKYDKSPTVMIQNFFQDARLSMPVLNEKNNDADFDYEELDMIRDFEKFYDDVIQEFRSAGQIVMFKCCQNYLAYLRGNVYVQYKTAEEAKEAIKLFNGRYYAGRRLTIEQSPITNWKSSICRSFDKRLCPHGKVCTFLHVFRNPKNA--------YSVPNRTDF----DPERAFRSGGYD---PRFVNPKHPVFQYYSQRDAYGYRSSDISKGKPA 857
            P PP D++      + E D  NC +Y KTGACRFG RCSR H     SPT++I++ F    +     ++ + DA  +Y E +  + F  FY+DV+ EF++ G+++ FK   N   +LRGNVYVQY++ EE + A+ LFNGR+YAGR+L  E  P+T WK +IC  F+ + CP GK C FLHVFRNP N         Y  P+RT      + ER  R G +D    R    ++P   +  +R+    R S   +GK +
Sbjct:  156 PEPPVDFR------VMEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQFLDFYEDVLPEFKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLFEIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDRTGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKS 407
The following BLAST results are available for this feature:
BLAST of TCONS_00049991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
U2AFM1.174e-4939.53U2 small nuclear ribonucleoprotein auxiliary facto... [more]
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