TCONS_00049997 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049997
Unique Name	TCONS_00049997
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	814

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_167:1806319..1812532+
coding sequence from alignment at scaffold_167:1806319..1812532+

transcript sequence

>TCONS_00049997 ID=TCONS_00049997|Name=TCONS_00049997|organism=Clytia hemisphaerica|type=transcript|length=814bp
TACAGCGTAAATTTAAGCTTAATTTAGGTAGTCGCTTtattttggtttga
aaaattctttttgactcATTTGTGGAGCGGTTGGCTGGCGGTGGTGACTT
TAAAATAAAGGGATTTCAAGGCTGTAAAATTGACTATTCACCCACATAAT
CATTAATTCTTTTGAAGGATAAAATACAAGACGAGCAACCAAAATGACTG
AATTTGTTGGCTCAGAAGAGAGAATAGCTGAATACAAGGAATGTTTCAAT
TTGTATGATAGAGATAATGATGGTTTGATTTCAATCGAACAAATGAAGCA
AGTCATACGATCATTGGGACAGTGTCCTTCAGATAAAGAACTGAAAGAAC
TTCAACAAAAATTAGGTAAAACAAAAATAACGTTCCCAGAATTTTTGGAC
TTGATGGGTAAAGTAATGCAGAAGTCACGAAACCCGGAGAGTGAGATTTT
TGAAGGTTTTCGATTGTACGATCAACGGCAAACGGGCATGATCAGTATGA
AAGACTTAAGACATGTCATGATGAGGAATGGTGAAAAATTATCACAACCT
GAATtTGACTACATGTTAAAAGAAGCAGGCATTTCAAAACAATCAACAAA
TGTAAAATACGCAGATTTGGCACGAGCTTTCAAACAAGTAAAATGATGAA
CGGAATCTTTCGAGAGGATGAAAAACACATGATAGTAGCTTACGTTTTGC
actctttttacaaaaagtTGAACTAGTTggattgaattttttatttattc
aaattataaacaaaatgTGTCTCAACTTTGACACAACTgaccagtagcgt
agacagggtgggca

Run BLAST on NCBI

protein sequence of TCONS_00049997-protein

>TCONS_00049997-protein ID=TCONS_00049997-protein|Name=TCONS_00049997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MTEFVGSEERIAEYKECFNLYDRDNDGLISIEQMKQVIRSLGQCPSDKEL
KELQQKLGKTKITFPEFLDLMGKVMQKSRNPESEIFEGFRLYDQRQTGMI
SMKDLRHVMMRNGEKLSQPEFDYMLKEAGISKQSTNVKYADLARAFKQVK

Run BLAST on NCBI

transcript from alignment at scaffold_167:1806319..1812532+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049997 ID=TCONS_00049997|Name=TCONS_00049997|organism=Clytia hemisphaerica|type=transcript|length=6214bp|location=Sequence derived from alignment at scaffold_167:1806319..1812532+ (Clytia hemisphaerica)
TACAGCGTAAATTTAAGCTTAATTTAGGTAGTCGCTTtattttggtttga
aaaattctttttgactcATTTGTGGAGCGGTTGGCTGGCGGTGGTGACTT
TAAAATAAAGGGATTTCAAGGCTGTAAAATTGACTATTCACCCACATAAT
CATTAATTCTTTTGAAGGATAAAATACAAGACGAGCAACCAAAATGGTGA
GCAATAGATTTTCAATATACAAAGTTTAGTTTTACAAAGCCAGAATAtgt
accgtgaaaaagggtaacttgcatcagtggaggctaacatgcgtagccct
caaatgattgacctggctggtcattagaatacaactacgcagctccgttC
GTAGTCCAGGAGCTGACTACTCCGTTCGCAGCTCTacttctaccattttt
gttttgatttatttttgtattttaatgaccagctgggtctttcatttgag
ggctatgcatgttagcctccaatgatgcaagttaccctttttcacggtat
gaCAGCTCCGGAAAAGGTGTGCCAAAAACTTATATCAGAATCATGTTTTC
TAATTCCCCCAGTATCTAGCCTATTCtaacaggctagctctaaagctcta
aaacagcatctaataacatgaaaaccagaatatgattcttcaatgggaat
caaaactataaagtgtacatcaatttgtcagatctagcaaaattaataac
ggTACTGTCagcattgacaataaaacaaaagattttctgtcaagagctgC
CTTGTAAATATGAGCCGATCACGCTCGCAAGCTCTCAcacgggtgaaaaa
ctttaatctgtcaattaTTTCTCAAGCAGCAAAAAGTATGCGAAGTGATT
CTAGCTTCACGATAGTGCTGCGGATCAATTATCggattcaattatcatta
tacctttattttcatttcttgaactttttgcaaaaaacgaaaaaaaattg
aaaaaaagttgtattttttactgctctattcacatactgaatttgaaaga
tcttcgaTGTGatgttttttgcaaacttcaaaaaactgatttttgtccca
ctCTATGTTATATATGTATATATATGTTTCCCATAAATTTTATATAAAGA
GTTAGAGCTATACTGTCTAAGTTGTTCTAATGTTGAAAATTCTGTTGCGA
TTATTCACTTTTCAGGGATGGGAATATTTTGAAGAACAAAatcactgatt
tgaaaatatttcatcatCTCTGGCTgcaaaaagcaaagaaaaaatagCTT
CAATCAATGAAGGAGTAAATCGGAAGTGAaagacagtgtagacctaaagc
tctatcccaacatctaataacatgaaaaccagaatatgattcttcaatgg
gaatcaaaactataaagtgcatcaatttgtcagatctaacaaaattaata
accgcactgtcatcattgacaataaaacaaacgattttctgtcaagagcc
ttgtaaacattccaacaacttccatcgaaatgatctatcacagctcagtc
taccatctttagcgcggtccgaggattgagccgagaacgctccgcgaact
cctgcgcagGTGAAAAACTTAAATCTGTCattcattttctcaagcgaaga
gtacgcaaagcgattctagctttacgatagtgcccgggtcatcaatggat
agtattcaattatcattatccctttattttcattcctactgtagaacttt
tgcaaaaaaaaggaaaaatggaaaagttgtattttttactgctatattca
catactgaatttgaaagatcttctatgtggcgtctttttgcaaacttcaa
aaaactgatttttgtcccgcctttgtgggactttggcttaagtgcttgag
tgcagcatagggtacaaagtccaaacatgcgtttcccgtaatttttgtgt
gaagagttaggtctacactgaaaGAATGTCACAACTAAACAGTCCATAGG
CTactaataaaatcaaaaaacatctgactatttattttaaattttcctac
TCCTTGTTACCCCTCAAAATTTCcaatcttttttactttttggaaaGTGA
TAAAAGAAGGACAACACAATGATTGGTGTTATTTTAATTAAATATTATTA
TCTTCTTACTAACTTTAGACTGAATTTGTTGGCTCAGAAGAGAGAATAGC
TGGTAAGTTGAATTGAATACTTATAATAATAACCTTcaaccaaaaaaatg
ttaaatagaaaagtttcatattttttcataattagATATCTATCCTAATT
CATAGAGGAAATTATGAAACTTTTCATTGGGTTGTCTATTTAGtatgaaa
aaacttgaaattcttctTGGATTGCTCCCtagaaatgttcgtccacctcC
TATTGATAAATGTCCTGAATATATTGGAACGCCATGCATTGACCtcattc
tcaacttcagttgagctagattCTGACAATGTCCGTATGTTAGTTTTTAC
ACTAGGGATAGAGACATTATTCGAGTGTTTGTTTTGAGCTATTTCCATCA
TTTGTCTTTACCATTGGTTTTGTCGTTTTCTTTTCCAATTGGATTGTTTT
TTGGGTTCAGCTGTCATacattttcttttggaaaagcGGATTTAGGGTCT
TCATCAACAGAtctgtattgttttttttttcatgtatGCTTTTAGGATAC
AAATTGTAAAATACTAGCGGTCCCTGGCGCTGTCGTCACAGACGACTTGT
CACTAATTCATTACCTACTTCGAAGATAGCACGTAAAtctataaattaaa
aagatttaaGTTAAAAAGATGACAATGCAATGCTAGTTTCCACCACAAAA
GATTTGCTTCCAAAAAgattatcaaaataaagaaagagaTTCCTAGCCAC
CGTGTGTAGACATTTGAGTGTGACTTTGAAACACTTTGAAAATCGTTGGA
AATGTTTCtcgtaaaaattgaaaatgaagtcTAATTTCAAAATAGTCTTC
AAAAACCCGAGAAATAGTGGAAAAGCTTCTGAAATTCTTTAAAATcccac
aatttttgaaaaatgacagatcactcaaaattcaatgtaGAGAATGCGTA
AGCATTCCGCAGCATATTGTTAAAATCTATAAAAGTCAAGGACACTAATC
AGGGGCTACGAATTACCAATATCATCTGTGTTTATGCTAAATATGAGGAA
GCTAAAAACTTTGGGACAGGctagagacttcaaaaatggtaaatttggct
gaaattgtttttatcaattttacaattgggcctgcAAGTGACTttaaaga
tactgaagttgagccagtgcggtcaGCACGTTCGGCAAGTTTGCAGGCTT
TAAgataatttttctcttttctctagAATACAAGGAATGTTTCAATTTGT
ATGATAGAGATAATGATGGTTTGATTTCAATCGAACAAATGAAGCAAGTC
ATACGATCATTGGGACAGTGTCCTTCAGATAAAGAACTGAAAGAACTTCA
ACAAAAATTAGGTTTGTTATTTGTTCATTGTCACTCTTTATTATATTTAA
GAACGATAAGTAATAGAGTCAATGGGAAAGTCGATCACATGAATTCGATA
AGTGAAAGGTTTGTAATTCTATCCAATAGCGAACTTTAAATGACCATATT
TATTTGACTTGCATGTTTGATCTCagcatttaaatttttagaaacGCTGA
TTTACGAAGATGAATCCAAATAATTTGATGAAAGTTAATTCGATTATAAA
GTAATCAAACACGGTTTCGTTACACTTTAATAGTCTCTTGCTCCTACAGA
GAATTGTCACtattaaaagaaattttctatATATagaaccatggaggtat
aaagaattgaatttgtcggtaattggtcatttaaagtcttttgatttctt
ttataaaatgtataaagagcttttcataaattacgtcacgagcaacgtct
acctcgttttcaaaatattgttatggtaattgattcccagaaAAGTTCAT
AAGAAAATTACTTTATAAAAGTAATATTGGAGACTCAAGGaatttaatca
ccttggtaatggtttcaaatcGAGGCAGTCGTtgcgctcaaaataattta
tgaaaaggcctattctAAGCTTGCCCGATGAAATAatactttttagtaga
actcaagtttgctctgaaatTTGCCTTATATTNGATGAAATAatactttt
tagtagaactcaattTTGCTCTGAACATTTAACTATCAAGAGCCTTATAT
ATACGAGAATTGAATAAAACTTGGCCCCACGATACAAGTCTATGTTCAAT
TTCGTTATctgttaatttttgttttgaaaatatattttctttagCCAGAA
AATgcaaagttctttataagcgcATGCGATTTCAGACTCAGTCtttagac
aaaaagtcgctgcagaattttggaggaaagtatcaagcaagaGAGTTCAC
TTTCAAGGCCTtcaagaaaacattgatcgaaaaattttgtcatttgatga
aggattgccaagtttttACAGGcgtttttttaatccaaatattttcttac
accgatgtcagaaacaatggatCTCATCTTATCTAATTTCTAACCAGTGG
ACAAAAGAAcacattaaaaatgcacgatatataaGATTATGCATGCAAAC
CTcgaaacttttttaatcgtaaggcgtctcctgtttttctttataccttc
ACTATTGGACACAATTTAAGCATTTTTGCTTCTTCATACTTTTAAGGTAA
AACAAAAATAACGTTCCCAGAATTTTTGGACTTGATGGGTAAAGTAATGC
AGAAGTCACGAAACCCGGAGAGTGAGATTTTTGAAGGTTTTCGATTGTAC
GATCAACGGCAAACGGGCATGATCAGTATGAAAGACTTAAGACATGTCAT
GATGAGGAATGGTGAAAAATTATCACAACCTGAATGTAAGTCATGTTTTA
TGACACTACATCACAGAtctaacagctgattggttggtAGGTAGAACAAA
ACTGAACAGGTTTTGAGACCCTGTCAATAATCTTTCCTTGAGTTGAAGCT
TTAGGGATTTTATTTCATCTtaataaagaaagttttttccttCGTTATCT
TGATGTTGACAGATTATCAGTGACTATCAAATCTTAAAAGCGTTTATGTA
TTAAATATGAAGAAGACTGATTTTTTAGGGGATTTAGGCCTTGGAATTTG
CTGTTCTGctgacacttttttatttttacactttttagtTGACTACATGT
TAAAAGAAGCAGGCATTTCAAAACAATCAACAAATGTAAAATACGCAGGT
AATTATATACAGTTTTTTTTCAGGTAGTacaattttaaaggttttctacg
ggaataaaaggagcttattttaggcagtgtcttcatgctgagtcagataa
gttaaagctacttttttacgcaacgatatcctgcaaacaagtgaaagata
aaaagttgtttcgagatgtgacctcacattctattgcttttgtaaacaaa
aaaacagcaaagtagatttcgagcaaatttacaatcgaatgttttgatta
taaggTAGAAAACCTTCAAAAACCTTTTCTAATCTtgtagactatgttat
agtctaagacgaatcactatcaaagaaaaaagcccaaagccgaagaaaat
tcgcaaacgggtttttttttgccgaaaagagtttacagtcggtagagttg
ctagtttcttcgaaactctcccgccgattttttttccgtataccgccatt
tTCCctcctttactatcactgtaacggacgataacatcgtctactaATCT
TGTTGCACtcttgtttttactacatcagcgtcatcagacctttcaatcaa
aacaaaacctctaAAGTACTTCAAAGCTATTTACCTTCTGTTGAATAGAT
CTCTGTTAATGTATTTTAGACAAACTTCACGAAAcgaatttaacgaaaaa
atagttttcaaaaattcgaaaattcataaaactaaGCATAAATCAAGAAG
GTTTTACTTCATATAAATTCTATGCCGCTTTTTTCACActgcttttgttt
ttctttctcccTAGATTTGGCACGAGCTTTCAAACAAGTAAAATGATGAA
CGGAATCTTTCGAGAGGATGAAAAACACATGATAGTAGCTTACGTTTTGC
actctttttacaaaaagtTGAACTAGTTggattgaattttttatttattc
aaattataaacaaaatgTGTCTCAACTTTGACACAACTgaccagtagcgt
agacagggtgggca

Coding sequence (CDS) from alignment at scaffold_167:1806319..1812532+

>TCONS_00049997 ID=TCONS_00049997|Name=TCONS_00049997|organism=Clytia hemisphaerica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_167:1806319..1812532+ (Clytia hemisphaerica)
ATGACTGAATTTGTTGGCTCAGAAGAGAGAATAGCTGAATACAAGGAATG
TTTCAATTTGTATGATAGAGATAATGATGGTTTGATTTCAATCGAACAAA
TGAAGCAAGTCATACGATCATTGGGACAGTGTCCTTCAGATAAAGAACTG
AAAGAACTTCAACAAAAATTAGGTAAAACAAAAATAACGTTCCCAGAATT
TTTGGACTTGATGGGTAAAGTAATGCAGAAGTCACGAAACCCGGAGAGTG
AGATTTTTGAAGGTTTTCGATTGTACGATCAACGGCAAACGGGCATGATC
AGTATGAAAGACTTAAGACATGTCATGATGAGGAATGGTGAAAAATTATC
ACAACCTGAATtTGACTACATGTTAAAAGAAGCAGGCATTTCAAAACAAT
CAACAAATGTAAAATACGCAGATTTGGCACGAGCTTTCAAACAAGTAAAA
TGAATGACTGAATTTGTTGGCTCAGAAGAGAGAATAGCTGAATACAAGGA
ATGTTTCAATTTGTATGATAGAGATAATGATGGTTTGATTTCAATCGAAC
AAATGAAGCAAGTCATACGATCATTGGGACAGTGTCCTTCAGATAAAGAA
CTGAAAGAACTTCAACAAAAATTAGGTAAAACAAAAATAACGTTCCCAGA
ATTTTTGGACTTGATGGGTAAAGTAATGCAGAAGTCACGAAACCCGGAGA
GTGAGATTTTTGAAGGTTTTCGATTGTACGATCAACGGCAAACGGGCATG
ATCAGTATGAAAGACTTAAGACATGTCATGATGAGGAATGGTGAAAAATT
ATCACAACCTGAATtTGACTACATGTTAAAAGAAGCAGGCATTTCAAAAC
AATCAACAAATGTAAAATACGCAGATTTGGCACGAGCTTTCAAACAAGTA
AAATGAATGACTGAATTTGTTGGCTCAGAAGAGAGAATAGCTGAATACAA
GGAATGTTTCAATTTGTATGATAGAGATAATGATGGTTTGATTTCAATCG
AACAAATGAAGCAAGTCATACGATCATTGGGACAGTGTCCTTCAGATAAA
GAACTGAAAGAACTTCAACAAAAATTAGGTAAAACAAAAATAACGTTCCC
AGAATTTTTGGACTTGATGGGTAAAGTAATGCAGAAGTCACGAAACCCGG
AGAGTGAGATTTTTGAAGGTTTTCGATTGTACGATCAACGGCAAACGGGC
ATGATCAGTATGAAAGACTTAAGACATGTCATGATGAGGAATGGTGAAAA
ATTATCACAACCTGAATtTGACTACATGTTAAAAGAAGCAGGCATTTCAA
AACAATCAACAAATGTAAAATACGCAGATTTGGCACGAGCTTTCAAACAA
GTAAAATGAATGACTGAATTTGTTGGCTCAGAAGAGAGAATAGCTGAATA
CAAGGAATGTTTCAATTTGTATGATAGAGATAATGATGGTTTGATTTCAA
TCGAACAAATGAAGCAAGTCATACGATCATTGGGACAGTGTCCTTCAGAT
AAAGAACTGAAAGAACTTCAACAAAAATTAGGTAAAACAAAAATAACGTT
CCCAGAATTTTTGGACTTGATGGGTAAAGTAATGCAGAAGTCACGAAACC
CGGAGAGTGAGATTTTTGAAGGTTTTCGATTGTACGATCAACGGCAAACG
GGCATGATCAGTATGAAAGACTTAAGACATGTCATGATGAGGAATGGTGA
AAAATTATCACAACCTGAATtTGACTACATGTTAAAAGAAGCAGGCATTT
CAAAACAATCAACAAATGTAAAATACGCAGATTTGGCACGAGCTTTCAAA
CAAGTAAAATGAATGACTGAATTTGTTGGCTCAGAAGAGAGAATAGCTGA
ATACAAGGAATGTTTCAATTTGTATGATAGAGATAATGATGGTTTGATTT
CAATCGAACAAATGAAGCAAGTCATACGATCATTGGGACAGTGTCCTTCA
GATAAAGAACTGAAAGAACTTCAACAAAAATTAGGTAAAACAAAAATAAC
GTTCCCAGAATTTTTGGACTTGATGGGTAAAGTAATGCAGAAGTCACGAA
ACCCGGAGAGTGAGATTTTTGAAGGTTTTCGATTGTACGATCAACGGCAA
ACGGGCATGATCAGTATGAAAGACTTAAGACATGTCATGATGAGGAATGG
TGAAAAATTATCACAACCTGAATtTGACTACATGTTAAAAGAAGCAGGCA
TTTCAAAACAATCAACAAATGTAAAATACGCAGATTTGGCACGAGCTTTC
AAACAAGTAAAATGAATGACTGAATTTGTTGGCTCAGAAGAGAGAATAGC
TGAATACAAGGAATGTTTCAATTTGTATGATAGAGATAATGATGGTTTGA
TTTCAATCGAACAAATGAAGCAAGTCATACGATCATTGGGACAGTGTCCT
TCAGATAAAGAACTGAAAGAACTTCAACAAAAATTAGGTAAAACAAAAAT
AACGTTCCCAGAATTTTTGGACTTGATGGGTAAAGTAATGCAGAAGTCAC
GAAACCCGGAGAGTGAGATTTTTGAAGGTTTTCGATTGTACGATCAACGG
CAAACGGGCATGATCAGTATGAAAGACTTAAGACATGTCATGATGAGGAA
TGGTGAAAAATTATCACAACCTGAATtTGACTACATGTTAAAAGAAGCAG
GCATTTCAAAACAATCAACAAATGTAAAATACGCAGATTTGGCACGAGCT
TTCAAACAAGTAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031677	XLOC_031677	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00049997-protein	TCONS_00049997-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_167	supercontig	scaffold_167:1806319..1812532 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.7402	27.1053	39.1738	50.4077	33.2138	25.1837	41.6918	41.4312	32.7131	23.994	24.2991	27.0648	30.2642	27.4199	11.8875	14.8654	29.2743	37.1794	29.8592	40.7692	30.2764	29.4526	13.5818	14.9763	20.525	27.8704	14.3931	11.2416	9.04707	10.7427

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

Blast

[Close]

BLAST of TCONS_00049997 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.035e-28
Identity = 58/127 (45.67%), Postives = 82/127 (64.57%), Query Frame = 2

Query:  212 SEERIAEYKECFNLYDRDNDGLISIEQMKQVIRSLGQCPSDXXXX---XXXXXXGKTKITFPEFLDLMGKVMQKSRNPESEIFEGFRLYDQRQTGMISMKDLRHVMMRNGEKLSQPEFDYMLKEAGI 583
            +EE+IAE+KE F+L+D+D DG I+ +++  V+RSLGQ P++ EL+         G   I FPEFL +M + M K  + E EI E FR++D+   G IS  +LRHVM   GEKL+  E D M++EA I
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKM-KDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADI 131

The following BLAST results are available for this feature:

BLAST of TCONS_00049997 vs. Swiss-Prot (Human)

BLAST of TCONS_00049997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CALM3	8.035e-28	45.67	Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1	[more]

You are here

TCONS_00049997 (transcript) - C. hemisphaerica