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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050009 ID=TCONS_00050009|Name=TCONS_00050009|organism=Clytia hemisphaerica|type=transcript|length=982bp
CATCATTTCACTTAATCATGGCTCGTACGAAACAAACACAACAACGGCGT
CGAAAAGTAGCATCACCAAAATCAACTTCAACACCTGCTGACAGAGTTTC
TTCTCCCCAATCATCACACGCATCACCCTCAAGTATCGATTCTAACTCGG
CCACACAAACACTGAATATGGGATCATCTATGGAAGGTACTAATGGTACG
GAGCAAGACAACACATCCTTGATTGAAGAAATTCTTGGAAATAATTCTGT
GCAGAATGACACTGAGGAAGAGAATTCGAATGTAAATGAAGGAAACTCAA
GCATTGCTGTTAAACTATTCGAAGAAAACCATAGTGACTCTGACGTatca
aaaagtcagaaaattccgGTAGAAGCTCCgaagaaaaatgaaagAAAATT
ATCACAAAggtcaaaaattctgaaagagaTACGTTTCTTCCGACGTACAA
ACCACAAATTGGTTCCTAAGTTGGCGTTCTGTCGGCTGGTCAAAGAAATC
GTGTCCAGAATTCCAGGGATTGATGAGACCCTTCGTATACAAACATTGGC
TTTGGAAGCACTCCATGAAGCAGCGGAGAGCTTTTTGGTTCGATTTTTTG
AGGAATCTAATTTATGTGCTTTTCATAGCCGACGAGTTACTGTTATGCGG
AAAGATATGAAGTTTTTGAAAGTACTCAAATATAGGACTGGTTATCCTAA
GCTTATTTGAGGGATTGTGTCGGttgttttctttgtcttttgatAAAGTT
GTTGGAAATATATTTGTAAGTGGATTTGTCGTGTTTTTATCTTTGCTTAG
TTTTTTCCGTGGTTTGTTGAAAGAATTCGATATTTGGGAATCAATTAATT
TCAAACCTTCTTTAAGGTCAAATTTATTTTGTACTTTTCGTTTTTGTATT
AAACTTTTACAAAATAGTTTTATATATTtcgcatttttttcaaaataata
ttaTCACGATTAAAAACGAAAATTGATCTTCG Run BLAST on NCBI transcript from alignment at scaffold_167:1850329..1853731+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050009 ID=TCONS_00050009|Name=TCONS_00050009|organism=Clytia hemisphaerica|type=transcript|length=3403bp|location=Sequence derived from alignment at scaffold_167:1850329..1853731+ (Clytia hemisphaerica)
CATCATTTCACTTAATCATGGCTCGTACGAAACAAACACAACAACGGCGT
CGAAAAGTAGCATCACCAAAATCAACTTCAACACCTGCTGACAGAGTTTC
TTCTCCCCAATCATCACACGCATCACCCTCAAGTATCGATTCTAACTCGG
CCACACAAACACTGAATATGGGATCATCTATGGAAGGTACTAATGGTACG
GAGCAAGACAACACATCCTTGATTGAAGAAATTCTTGGAAATAATTCTGT
GCAGAATGACACTGAGGAAGGTTAATAATAAAGCTTATTTTGACCTGTTT
TGACACCTCGGTTTCTGTGACCCGGTGAgaattagtctgaatcgcagacc
tctacaaaacctcaGGTAGTATAGGGAGAATAAATCCGTTAGTGGATNtg
aatcgcagacctctacaaaacctcaGGTAGTATAGGGAGAATaaatccgt
tagtggatacTAGCAGGATATTTCAGCCGATAGACATTGTcgatagtcag
aaaattgattttagtccTGTTTTAGAAATAGGAATATCAAAACGTAGGCA
AAACTAATTATACCATCTCAANGCTAGCAGGATATTTCAGCCAATAGACA
TTGTcgatagtcagaaaattgattttagtccTGTTTTAGAAATAGGAATA
TCAAAACGTAGGCAAAACTAATTATACCATCTCAAACAGTCAATTTAGAT
AAAATTTTAAAGCAGTTTTTTATTTATACTTATAGCATCAGAGAATTCGA
ATGTAAATGAAGGAAACTCAAGCATTGCTGTTAAACTATTCGAAGAAAAC
CATAGTGACTCTGACGTatcaaaaagtcagaaaattccgGTAGAAGCTCC
gaagaaaaatgaaaggtaatccaatgtcttattttttttcggTTTATCTG
GCCATGGACAGGGTCAAGGCTATAATACCTTGGTAGCGACTGGTGGATTT
AAGACAGTAGAGCAactacgtcggaaacatgcgaaggagtgcaacgctcg
tcaaaagaaaatgaaattacatttacaaatctcttcctctgataagtgcg
acatggtctaaaaccgcctatgccTTGTAGGGGGAATATTGTATAAATAT
TTCAGGCTTGCCTACGTTCTTATTTTNggggggggggggtcggtagtaaa
atctcagacatatatgagtagtaaaaggatttttacgaatttttacatac
cacaaCCCAGattcttggaagaggtattttacttccctggtagtaaaagc
ttttgggacaatttgtcatggagaccacctattttttggttgcttttctg
actgattttgcaaaaaaagctaaaaaatgatgatttctgTGACACAGTTT
Tcacgtagtgcaaaaattaatgtttttcccttagaattaaagtcttttat
attgacaaaaaatttcgagaattttttgtttgcagcaaacaactttccaa
cagaaaattttttcaaattataaaaattttcagattttttcagaaNNNNN
NNNNNNNNNNNtttgcagcaaacaactttccaacagaaaattttttcaaa
ttataaaaattttcagattttttcagaaaagtcatccagaaaattaaaag
aattacaaaaaatacctaaaatttgctaattttaccagttttaactaccc
gggtagtaaatttttttcaacactttaacacatagataccacccatttta
gtatttaactaccctgggtagtaaattttttttttcgatttttcgtcaca
ccaccaccgtagtaaacgtcattatgtctgagattttactaccgaccccc
cccccccttttttNGCTTATTTTGACCTGTTTTGACACCTCGGTTTCTGT
GACCCGGTGAgaattagtctgaatcgcagacctctacaaaacctcaGGTA
GTATAGGGAGAATaaatccgttagtggatacTAGCAGGATATTTCAGCCA
ATAGACATTGTcgatagtcagaaaattgattttagtccTGTTTTAGAAAT
AGGAATATCAAAACGTAGGCAAAACTAATTATACCATCTCAAACAGTCAA
TTTAGATAAAATTTTAAAGCAGTTTTTTATTTATACTTATAGCATCAGAG
AATTCGAATGTAAATGAAGGAAACTCAAGCATTGCTGTTAAACTATTCGA
AGAAAACCATAGTGACTCTGACGTatcaaaaagtcagaaaattccgGTAG
AAGCTCCgaagaaaaatgaaaggtaatccaatgtcttattttttttcggT
TTATCTGGCCATGGACAGGGTCAAGGCTATAATACCTTGGTAGCGACTGG
TGGATTTAAGACAGTAGAGCAactacgtcggaaacatgcgaaggagtgca
acgctcgtcaaaagaaaatgaaattacatttacaaatctcttCCTCTGAT
AAGTgcgacatggtctaaaaccgcctatgccTTGTAGGGGGAATATTGTA
TAAATATTTCAGGCTTGCCTACGTTCTTATTTTAGTTTGGCATGTTGAGG
GTTAAATTATTATAATCTAGTTATTCTTTCAAGGATAAAGAAGTATTGAA
GAGGACCTTGAAAAACTTTGTACCGTTTATTAAGCCTTTCCAAGCTCAAC
ATTGTTCtagaatgttttttattttctggcatTTCTGAATCtgagcctca
atgttcttataaaattgttattataaaaaaaacgatTGTGTGAAGAAATT
ACTTAACCGAGACCAGTAGTTTCATCTCTGATTTCTGGCAgctaatttta
aatttgatgccGACTGGCTACTCGTTCGAACTATTTTCTACCGCTCGTAT
GTCCTCGTGTTTCAGAAAATTATCACAAAggtcaaaaattctgaaagaga
TACGTTTCTTCCGACGTACAAACCACAAATTGGTTCCTAAGTTGGCGTTC
TGTCGGCTGGTCAAAGAAATCGTGTCCAGAATTCCAGGGATTGATGAGAC
CCTTCGTATACAAACATTGGCTTTGGAAGCACTCCATGAAGCAGCGGAGA
GCTTTTTGGTTCGATTTTTTGAGGAATCTAATTTATGTGCTTTTCATAGC
CGACGAGTTACTGTTATGCGGAAAGATATGAAGTTTTTGAAAGTACTCAA
ATATAGGACTGGTTATCCTAAGCTTATTTGAGGGATTGTGTCGGttgttt
tctttgtcttttgatAAAGTTGTTGGAAATATATTTGTAAGTGGATTTGT
CGTGTTTTTATCTTTGCTTAGTTTTTTCCGTGGTTTGTTGAAAGAATTCG
ATATTTGGGAATCAATTAATTTCAAACCTTCTTTAAGGTCAAATTTATTT
TGTACTTTTCGTTTTTGTATTAAACTTTTACAAAATAGTTTTATATATTt
cgcatttttttcaaaataatattaTCACGATTAAAAACGAAAATTGATCT
TCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050009-exon-scaffold_167-1491911889:1850329..1850598 | TCONS_00050009-exon-scaffold_167-1491911889:1850329..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1510915933:1850329..1850598 | TCONS_00050009-exon-scaffold_167-1510915933:1850329..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1575043694:1850329..1850598 | TCONS_00050009-exon-scaffold_167-1575043694:1850329..1850598 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1491911889:1851070..1851193 | TCONS_00050009-exon-scaffold_167-1491911889:1851070..1851193 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1510915933:1851070..1851193 | TCONS_00050009-exon-scaffold_167-1510915933:1851070..1851193 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1575043694:1851070..1851193 | TCONS_00050009-exon-scaffold_167-1575043694:1851070..1851193 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1491911889:1853144..1853731 | TCONS_00050009-exon-scaffold_167-1491911889:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1510915933:1853144..1853731 | TCONS_00050009-exon-scaffold_167-1510915933:1853144..1853731 | Clytia hemisphaerica | exon |
| TCONS_00050009-exon-scaffold_167-1575043694:1853144..1853731 | TCONS_00050009-exon-scaffold_167-1575043694:1853144..1853731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:1850329..1853731 + |
Blast
The following BLAST results are available for this feature:
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