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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050026 ID=TCONS_00050026|Name=TCONS_00050026|organism=Clytia hemisphaerica|type=transcript|length=2086bp GGGACACCTTTTCAGAAACAGGGGTGTGTTGTATGATAGTGTGTATTATA GATTCACCTTTTCTTTCAGACGACAGTGAGTgtttgatattttacagacc cgtACGACCTGTATAACACAAAAAAAGACTTGTAGGTTGTATAGCTGCGA GAGTGGTATGAGTATATGGACCAATCAGATATGCCGTTCATACTTGTTCT GGACTACTACCATGTACATGCTCTGTTTTGATtacaaaaaataatcatat tgtcTTTTGTAGaattataaaaattaattttttaaatggtTGCTGGTGTT CGCTTCATTGATGGAAGAAAATCAAACTGTTGATGATGCCCCTCCTCCTT CATATGATTCAATTGCAGCTGATCCACCACCAACATATGACAGTATTTTT GGTGAGCTGAGAAATGCACGGGCAGAATCATCTGGCACAGCAGATTTTAT AAAGAAAGTCATCTTTGTTATACTTTCTACAATTGGATGCACTATCTGTT TGGGATTGTCCATTGCTTTGCCAGTGGCATGTATTGTAATAGGAGTCAAA TACAAAGATGATTGCCCACGTCAACGTTTGATTCCGATCTATTTGATTGT GATGGGTGCATTTGGTACGGTACGTCATTTCTTGGGAATGCATTCACAGT GTAAACGAAGGAATCAGCAAAATGATGGTGACAGCTCAGATGAAGCAAAT AAAAAGACATTCTTAGAAAGACTTATTGATTGTTTCTTGGTAGCTTGGTT CATAGCTGGCAATGTATGGATTTACAGTATTTATGAGCCGTCTTATAATA AGTTTACGGATCCCTTGGATTATTGTGATGAGACGctttatttgttttca ttttggttGATGACCGCTTCATATATTTGTATTGCGTTGTTATGTTGCTG TATGTGCTGTATGGCATGCACTGCTGCTTTCTCTGATGATTAGAAGCAGA TGCAATACagatttactttatttttgtttctttggttTCTGATGAAGAAT CATTTTTAGTTTATTAGTCACATGATTTTTATTTAGCAatattaatttat tttcagGAGGGTTGGGGAGAATtctttttttgcgatttttagaATATTCT TATTGAAAATATTATCCCACATTGATTTATTTGTAATAAAAGCTATGAAT TTCAAATGAATACCATCATTTATGGGTAGTTTTGGTCCTGTTGTAGAATT TCATTCTAGCAAAATTATTCCACGTACATTTTTTCACCGGACATTAGGTG AACCCTAAGGGCTTTTCCACTTTTCCACTTGAAATGTTTTACAGAACTTT CTTTATGAATCAGATTTGCGTTGATTATCATTTGGTACTGCTACaattaa ttcatttttctaGCATTACATACGCATCTTTATATAGTGGCTAACTACAA TTTacaatttctgaaaattatttagagtaaaaatattaaaattattgAGT TTTTtcgtaaaataaataaatcatagGATAAAAATGTCCGAATTTGATAT CCAAGTTTATTTAAAGCTCCCAACGATGCATAAAAAATCGGGCACGGgtc taaaaagatttttctgtcTTTTGTACACTTCGATGTCTCAGAAGTGCGTC GCTACCCCAACCTTTttgaaatccttttttttttttgtacaagTAGCTCT CTACCGCCCCCTTACGAATTCTAAACATTATTATCGATCTGTTTTATACT GTGGGAAAGACTgatgaaaatatataaataggtttttaaaggtttcattt ttacataagtgttaccgtttcatatcaggcacatcTTTCATATTAGGAct gtgtctgcctattgttatattgttcTGACTGTaagtaaaaaaatgttttt tttctttccctctttttgaccaatgttgctccacatccgttttaattcaa tatcaaaaagcttgtgaatcaaaattgatgattaaGAGTATTAAGCAAAC CATATCACTCTtatcaaaaaacaaaaccttttaacgttttaattttaaaa atacacgtttttctttttttaagaaacatgaggctcagaatgcctaaaaa actaagaaacatgctgaagctgagaatgagaaaaat Run BLAST on NCBI protein sequence of TCONS_00050026-protein >TCONS_00050026-protein ID=TCONS_00050026-protein|Name=TCONS_00050026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MEENQTVDDAPPPSYDSIAADPPPTYDSIFGELRNARAESSGTADFIKKV IFVILSTIGCTICLGLSIALPVACIVIGVKYKDDCPRQRLIPIYLIVMGA FGTVRHFLGMHSQCKRRNQQNDGDSSDEANKKTFLERLIDCFLVAWFIAG NVWIYSIYEPSYNKFTDPLDYCDETLYLFSFWLMTASYICIALLCCCMCC MACTAAFSDD Run BLAST on NCBI transcript from alignment at scaffold_167:235305..240114- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050026 ID=TCONS_00050026|Name=TCONS_00050026|organism=Clytia hemisphaerica|type=transcript|length=4810bp|location=Sequence derived from alignment at scaffold_167:235305..240114- (Clytia hemisphaerica) GGGACACCTTTTCAGAAACAGGGGTGTGTTGTATGATAGTGTGTATTATA
GATTCACCTTTTCTTTCAGACGACAGTGAGTGTTTGATATTTTACAGACC
CGTACGACCTGTATAACACAAAAAAAGACTTGTAGGTTGTATAGCTGCGA
GAGTGGTATGAGTATATGGACCAATCAGATATGCCGTTCATACTTGTTCT
GGACTACTACCATGTACATGCTCTGTTTTGATTACAAAAAATAATCATAT
TGTCTTTTGTAGAATTATAAAAATTAATTTTTTAAATGGTTGCTGGTGTT
CGCTTCATTGATGGAAGAAAATCAAACTGTTGATGATGCCCCTCCTCCTT
CATATGATTCAATTGCAGGTATAATTATTCATGTCTTTTGTTGATATTCA
ATGTTCAATGTTCGAGTTTTTATTTGACGTCAGTTAGTCAACANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCTTCTGACGACTGGACGACAGATGAAGAATTAGACAATTTATAAATC
TAAAATTATTTCGTAGAGGTCGATAGACCTGTGAAATATAATTCTATGAA
TGTTTCAATGCTTCACTGAAATAAACGATGAATTTCGGTTCTTGATAACG
ATATGAGGATAAAAGAAAAGCTTTAAGGCCATATAATGCTANTGAATTTC
GGTTCTTGATAAAGATATGAGGATAAAAGAAAAGCTTACAGGCCATATAT
ATAATGCTGATTTTCAAATTGCACCATGATAAGATGACATTTTGTGCATG
GTTTAATTTTTTAATGTTTTTACAATTTCTTTCTAAAAAAATCATTACTT
ATCATCCTTTCTGTTTTTCATTTTAGCTGATCCACCACCAACATATGACA
GTATTTTTGGTGAGCTGAGAAATGCACGGGCAGAATCATCTGGCACAGCA
GATTTTATAAAGAAAGTCATCTTTGTTATACTTTCTACAAGTAGGTTTTT
TTATGTTGAAGGTATTTTACTAATATAATAATTAGATAATTAGATTTTAA
AGATTAAAATAAGACTCTCTTAGTAACAACATTATCTATAATAATAGCTG
TACGTGTTTAAAGCCTTTCTCTGCAGCGTTTTGATTTTTGCTAGCGATTT
CAGATTTCCGTATGTTTTAGATTTGCATCAACATTTTTAGCGTAAACACA
GATAATATTGATAATTCTTGCCCCCTGCTGATTATTGTCCATGAATTTTA
TAGATTTCAACAATAGGCTGCAGAAAACTTCCACATTCTTCCACATTGAA
TTTTTTAAGTGACCTGTCATCTTCCTAATTTTGTGGTATTTTGGTATTTT
TAAAGAATTTTAGAAGCACCCTACTATTTCTACTCTTCATTTTCAATTTT
TACGAGAAACATTTCAAAAGATTTTTAATGATTTTGAAAGACTTTCAAAG
TAACACTCGAATGTCTACACACGATGATGGCTAGGAATCCCTTTTTTTAT
TTTGAAGCTTTTTGGAAGCAAATCTTTTGTGGTAGAAACTAGCCTTGCAA
GGTCATTTTTTAAACTTAGATCTTTTTATTATATGTTTTATGTGCTTTAT
TCAATGTAGGTAATGAATTAGAGACAAGTCGTCTGTGACGACGACCTGGG
GCCGCTAGTTTCTGTCTATATACAGTTATTGCTATGTTTATTTTTATCAA
CCATTAATTTATCTTTGTTTTCTAGTTGGATGCACTATCTGTTTGGGATT
GTCCATTGCTTTGCCAGTGGCATGTATTGTAATAGGTTCGTTTTTTTCTT
TTCCTCAGTCAATACTCAACATAATCTTTGCTGAAAGTGTCCTTTAATTT
GAAATTTCTCTTTGTTTGATTACAACGACTAGTTGTCACGATCAATTAGA
TTATTAACTGTACTGTAGGAAGGTAGAACATCAACAAAATTCGATTTTCT
CTTTTCCTCTCTATAGGAGTCAAATACAAAGATGATTGCCCACGTCAACG
TTTGATTCCGATCTATTTGATTGTGATGGGTGCATTTGGTACGGTACGTC
ATTTCTTGGGAATGCATTCACAGTGTAAACGAAGGAATCAGCAAAATGAT
GGTGACAGCTCAGATGAAGCAAATAAAAAGACATTCTTAGAAAGACTTAT
TGATTGTTTCTTGGTAGCTTGGTTCATAGCTGGCAATGTATGGATTTACA
GTATTTATGAGCCGTCTTATAATAAGTTTACGGATCCCTTGGATTATTGT
GATGAGACGCTTTATTTGTTTTCATTTTGGTTGATGACCGCTTCATATAT
TTGTATTGCGTTGTTATGTTGCTGTATGTGCTGTATGGCATGCACTGCTG
CTTTCTCTGATGATTAGAAGCAGATGCAATACAGATTTACTTTATTTTTG
TTTCTTTGGTTTCTGATGAAGAATCATTTTTAGTTTATTAGTCACATGAT
TTTTATTTAGCAATATTAATTTATTTTCAGGAGGGTTGGGGAGAATTCTT
TTTTTGCGATTTTTAGAATATTCTTATTGAAAATATTATCCCACATTGAT
TTATTTGTAATAAAAGCTATGAATTTCAAATGAATACCATCATTTATGGG
TAGTTTTGGTCCTGTTGTAGAATTTCATTCTAGCAAAATTATTCCACGTA
CATTTTTTCACCGGACATTAGGTGAACCCTAAGGGCTTTTCCACTTTTCC
ACTTGAAATGTTTTACAGAACTTTCTTTATGAATCAGATTTGCGTTGATT
ATCATTTGGTACTGCTACAATTAATTCATTTTTCTAGCATTACATACGCA
TCTTTATATAGTGGCTAACTACAATTTACAATTTCTGAAAATTATTTAGA
GTAAAAATATTAAAATTATTGAGTTTTTTCGTAAAATAAATAAATCATAG
GATAAAAATGTCCGAATTTGATATCCAAGTTTATTTAAAGCTCCCAACGA
TGCATAAAAAATCGGGCACGGGTCTAAAAAGATTTTTCTGTCTTTTGTAC
ACTTCGATGTCTCAGAAGTGCGTCGCTACCCCAACCTTTTTGAAATCCTT
TTTTTTTTTTGTACAAGTAGCTCTCTACCGCCCCCTTACGAATTCTAAAC
ATTATTATCGATCTGTTTTATACTGTGGGAAAGACTGATGAAAATATATA
AATAGGTTTTTAAAGGTTTCATTTTTACATAAGTGTTACCGTTTCATATC
AGGCACATCTTTCATATTAGGACTGTGTCTGCCTATTGTTATATTGTTCT
GACTGTAAGTAAAAAAATGTTTTTTTTCTTTCCCTCTTTTTGACCAATGT
TGCTCCACATCCGTTTTAATTCAATATCAAAAAGCTTGTGAATCAAAATT
GATGATTAAGAGTATTAAGCAAACCATATCACTCTTATCAAAAAACAAAA
CCTTTTAACGTTTTAATTTTAAAAATACACGTTTTTCTTTTTTTAAGAAA
CATGAGGCTCAGAATGCCTAAAAAACTAAGAAACATGCTGAAGCTGAGAA
TGAGAAAAAT Coding sequence (CDS) from alignment at scaffold_167:235305..240114- >TCONS_00050026 ID=TCONS_00050026|Name=TCONS_00050026|organism=Clytia hemisphaerica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_167:235305..240114- (Clytia hemisphaerica) GAGTCAAATACAAAGATGATTGCCCACGTCAACGTTTGATTCCGATCTAT TTGATTGTGATGGGTGCATTTGGTACGGTACGTCATTTCTTGGGAATGCA TTCACAGTGTAAACGAAGGAATCAGCAAAATGATGGTGACAGCTCAGATG AAGCAAATAAAAAGACATTCTTAGAAAGACTTATTGATTGTTTCTTGGTA GCTTGGTTCATAGCTGGCAATGTATGGATTTACAGTATTTATGAGCCGTC TTATAATAAGTTTACGGATCCCTTGGATTATTGTGATGAGACGCTTTATT TGTTTTCATTTTGGTTGATGACCGCTTCATATATTTGTATTGCGTTGTTA TGTTGCTGTATGTGCTGTATGGCATGCACTGCTGCTTTCTCTGATGATTA GTTGGATGCACTATCTGTTTGGGATTGTCCATTGCTTTGCCAGTGGCATG TATTGTAATAGCTGATCCACCACCAACATATGACAGTATTTTTGGTGAGC TGAGAAATGCACGGGCAGAATCATCTGGCACAGCAGATTTTATAAAGAAA GTCATCTTTGTTATACTTTCTACAAATGGAAGAAAATCAAACTGTTGATG ATGCCCCTCCTCCTTCATATGATTCAATTGCAGGAGTCAAATACAAAGAT GATTGCCCACGTCAACGTTTGATTCCGATCTATTTGATTGTGATGGGTGC ATTTGGTACGGTACGTCATTTCTTGGGAATGCATTCACAGTGTAAACGAA GGAATCAGCAAAATGATGGTGACAGCTCAGATGAAGCAAATAAAAAGACA TTCTTAGAAAGACTTATTGATTGTTTCTTGGTAGCTTGGTTCATAGCTGG CAATGTATGGATTTACAGTATTTATGAGCCGTCTTATAATAAGTTTACGG ATCCCTTGGATTATTGTGATGAGACGCTTTATTTGTTTTCATTTTGGTTG ATGACCGCTTCATATATTTGTATTGCGTTGTTATGTTGCTGTATGTGCTG TATGGCATGCACTGCTGCTTTCTCTGATGATTAGTTGGATGCACTATCTG TTTGGGATTGTCCATTGCTTTGCCAGTGGCATGTATTGTAATAGCTGATC CACCACCAACATATGACAGTATTTTTGGTGAGCTGAGAAATGCACGGGCA GAATCATCTGGCACAGCAGATTTTATAAAGAAAGTCATCTTTGTTATACT TTCTACAAATGGAAGAAAATCAAACTGTTGATGATGCCCCTCCTCCTTCA TATGATTCAATTGCAGGAGTCAAATACAAAGATGATTGCCCACGTCAACG TTTGATTCCGATCTATTTGATTGTGATGGGTGCATTTGGTACGGTACGTC ATTTCTTGGGAATGCATTCACAGTGTAAACGAAGGAATCAGCAAAATGAT GGTGACAGCTCAGATGAAGCAAATAAAAAGACATTCTTAGAAAGACTTAT TGATTGTTTCTTGGTAGCTTGGTTCATAGCTGGCAATGTATGGATTTACA GTATTTATGAGCCGTCTTATAATAAGTTTACGGATCCCTTGGATTATTGT GATGAGACGCTTTATTTGTTTTCATTTTGGTTGATGACCGCTTCATATAT TTGTATTGCGTTGTTATGTTGCTGTATGTGCTGTATGGCATGCACTGCTG CTTTCTCTGATGATTAGTTGGATGCACTATCTGTTTGGGATTGTCCATTG CTTTGCCAGTGGCATGTATTGTAATAGCTGATCCACCACCAACATATGAC AGTATTTTTGGTGAGCTGAGAAATGCACGGGCAGAATCATCTGGCACAGC AGATTTTATAAAGAAAGTCATCTTTGTTATACTTTCTACAAATGGAAGAA AATCAAACTGTTGATGATGCCCCTCCTCCTTCATATGATTCAATTGCAGG AGTCAAATACAAAGATGATTGCCCACGTCAACGTTTGATTCCGATCTATT TGATTGTGATGGGTGCATTTGGTACGGTACGTCATTTCTTGGGAATGCAT TCACAGTGTAAACGAAGGAATCAGCAAAATGATGGTGACAGCTCAGATGA AGCAAATAAAAAGACATTCTTAGAAAGACTTATTGATTGTTTCTTGGTAG CTTGGTTCATAGCTGGCAATGTATGGATTTACAGTATTTATGAGCCGTCT TATAATAAGTTTACGGATCCCTTGGATTATTGTGATGAGACGCTTTATTT GTTTTCATTTTGGTTGATGACCGCTTCATATATTTGTATTGCGTTGTTAT GTTGCTGTATGTGCTGTATGGCATGCACTGCTGCTTTCTCTGATGATTAG TTGGATGCACTATCTGTTTGGGATTGTCCATTGCTTTGCCAGTGGCATGT ATTGTAATAGCTGATCCACCACCAACATATGACAGTATTTTTGGTGAGCT GAGAAATGCACGGGCAGAATCATCTGGCACAGCAGATTTTATAAAGAAAG TCATCTTTGTTATACTTTCTACAAATGGAAGAAAATCAAACTGTTGATGA TGCCCCTCCTCCTTCATATGATTCAATTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050026-exon-scaffold_167-1575043694:239747..240114 | TCONS_00050026-exon-scaffold_167-1575043694:239747..240114 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1575043694:237825..237938 | TCONS_00050026-exon-scaffold_167-1575043694:237825..237938 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1575043694:237030..237089 | TCONS_00050026-exon-scaffold_167-1575043694:237030..237089 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1575043694:235305..236848 | TCONS_00050026-exon-scaffold_167-1575043694:235305..236848 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1510915933:239747..240114 | TCONS_00050026-exon-scaffold_167-1510915933:239747..240114 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1510915933:237825..237938 | TCONS_00050026-exon-scaffold_167-1510915933:237825..237938 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1510915933:237030..237089 | TCONS_00050026-exon-scaffold_167-1510915933:237030..237089 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1510915933:235305..236848 | TCONS_00050026-exon-scaffold_167-1510915933:235305..236848 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1491911889:239747..240114 | TCONS_00050026-exon-scaffold_167-1491911889:239747..240114 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1491911889:237825..237938 | TCONS_00050026-exon-scaffold_167-1491911889:237825..237938 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1491911889:237030..237089 | TCONS_00050026-exon-scaffold_167-1491911889:237030..237089 | Clytia hemisphaerica | exon |
TCONS_00050026-exon-scaffold_167-1491911889:235305..236848 | TCONS_00050026-exon-scaffold_167-1491911889:235305..236848 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_167 | supercontig | scaffold_167:235305..240114 - |
Blast
The following BLAST results are available for this feature:
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