Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050030 ID=TCONS_00050030|Name=TCONS_00050030|organism=Clytia hemisphaerica|type=transcript|length=3024bpRun BLAST on NCBI transcript from alignment at scaffold_167:248590..265144- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050030 ID=TCONS_00050030|Name=TCONS_00050030|organism=Clytia hemisphaerica|type=transcript|length=16555bp|location=Sequence derived from alignment at scaffold_167:248590..265144- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00050030 vs. Swiss-Prot (Human)
Match: DEAF1 (Deformed epidermal autoregulatory factor 1 homolog OS=Homo sapiens GN=DEAF1 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.284e-20 Identity = 55/111 (49.55%), Postives = 70/111 (63.06%), Query Frame = 2 Query: 1049 SKGKWEMAAKANILTVRCREEVAELHKDKFGSGSKGKCIKFGDKWCTPIEFEGLAGRASCKDWKRSIRFHGLHLQKLIEDQFLTLHAISCTCGICCGDETLVNNLILKKHY 1381 +K W+ + + L VRCR L+K++ GSG +G+CIK G+ W +P EFE +AGRAS KDWKRSIR+ G LQ LI+D L HA SCTC CC D TL + L Y Sbjct: 190 TKYNWDPSVYDSELPVRCRNISGTLYKNRLGSGGRGRCIKQGENWYSPTEFEAMAGRASSKDWKRSIRYAGRPLQCLIQDGILNPHAASCTCAACCDDMTLSGPVRLFVPY 300 The following BLAST results are available for this feature:
BLAST of TCONS_00050030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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