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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050046 ID=TCONS_00050046|Name=TCONS_00050046|organism=Clytia hemisphaerica|type=transcript|length=690bp
GTCCAAACTATAAAAACTCAAATGTAGATATCCGAGGTTGCAGATGGAAA
AGGATTGGAAGAATAGTACAATATTGTATTTTATCATTCTAATGTACCAC
TGGAAATGTTGTGTTTCGCTAAGATGTGAATCAAACATACCACCTAACAT
TCATGGCGTTCACCCGAGCATGTTAGTCGACTCAGAAACGAAAGTGACAA
AAAACAAGTTGATCCATGTGATTCCTCGAATCTCAACCGAATGGTCGTTA
TCGCTAACGATACGAATCGAAAACGCTCGATTAGGatattggaaaaatat
tattcATTTCTCAACTGGTGAAAATTATAGTCGGTTGCCAGCAATTTTTC
TTTCCCAACATACTGACACTTTACACATTTGCTATGACATCAACGGTTTT
GTAAATCATTGTCACAATCCACCAATCAAAATTGGGCAAAAACATCACGT
GACAGTTCATCAGAGATATATCTCAAATGGAGATTACAGATATTTTATCA
TATTGGATGGAGTGGAGGTATATTCTGTAATCAATAAACAAGCGAAACAA
TTTTATAATGTTCAAGTTTTTACTGGTGATCCGTGGTATGCTGCAGATGA
TTATATTTCGAACGTTGAATTCAGTAattatttgtaaaaataaaataaga
aacaAATTTTGTAGTTCTTCAACAAAAGGCTGGAAAGGCT Run BLAST on NCBI transcript from alignment at scaffold_167:502049..503716- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050046 ID=TCONS_00050046|Name=TCONS_00050046|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_167:502049..503716- (Clytia hemisphaerica)
GTCCAAACTATAAAAACTCAAATGTAGATATCCGAGGTTGCAGATGGAAA
AGGATTGGAAGAATAGTACAATATTGTATTTTATCATTCTAATGGTATGT
ATTTTCTTTTGACAAACTAAAATAGTCTTGAAGAGAGAAAGAAATTTTGT
CTGAAATATATTTTACATTTCTGCTAGAATCATTAGTGAATTACTCAAGT
ATTCTTGCTGGACACAACGTTGTTTCAACGTTCATCTAACGTTATATGAA
TGTTACGAACGTTAAATATACGTTGAAACAACGTTGTGTGCCAGCTGGGT
TACTGTGNTAGGTAAAGATTAGAGATACTTTATCTTAATCGATGGATTGG
AAGTACATTCTGTAGTCAATAAACAATAAGCTCAGCGTATTTCAAATTTC
ATTTGCAATGGTCTAAATTTTCAGGGTCCATTTTCAACTAATTTGTATCT
AACATAGGGGGGCCAATTTTTCTTCGTCAAACATCAAGGTTTGTTTTTGC
TGTTCTTTTGACAGACTTGTTGCAGGATTTTTTCACTTAAAAATACTTGA
AACTCCCTTGTTTGATTGGCTTTGTTCTACTTATTTTCAGTACCACTGGA
AATGTTGTGTTTCGCTAAGATGTGAATCAAACATACCACCTAACATTCAT
GGCGTTCACCCGAGCATGTTAGTCGACTCAGGTAAATATTTTGTGGTAAA
AAATAGCTTAAATTGCTAATTAAACCACTCAAATATCAGAAATTCTGCAT
CTCGGTAGAAAAATTCAGCATCATTCAACATTATTAAAAAACAATTTCTG
AGCCCAACTCTTAAAGCCGCTAATTATTGCATGAATTTCATAAATTAAAC
CTTCAAAGGCTGTCGCTTTGAGCGCAACAAAAGTTGAAACTTTTCAACCT
TTTTGCTGAGCTGTGCACCTTCCCAATTGTTCTTTTTGAATTAGCCAATC
AGAAGAGACATTTAACACTCTTGTACCGTGTGCAAAAAATATCAACAATA
GAAAAAAGAAAAAATATGCAGCATATCTTCCCTTTATTTTGGATCAGGGG
AATGGAAAAGGCGTTCAGTGACCAAAGTGCCTGAGCCGTGCGCCTTGTTC
GCCAACCATAAAATGCTAAGTGGGTAGCGGCCTTAACATATCAATATTAA
ATTATATCCTTAGAAACGAAAGTGACAAAAAACAAGTTGATCCATGTGAT
TCCTCGAATCTCAACCGAATGGTCGTTATCGCTAACGATACGAATCGAAA
ACGCTCGATTAGGATATTGGAAAAATATTATTCATTTCTCAACTGGTGAA
AATTATAGTCGGTTGCCAGCAATTTTTCTTTCCCAACATACTGACACTTT
ACACATTTGCTATGACATCAACGGTTTTGTAAATCATTGTCACAATCCAC
CAATCAAAATTGGGCAAAAACATCACGTGACAGTTCATCAGAGATATATC
TCAAATGGAGATTACAGATATTTTATCATATTGGATGGAGTGGAGGTATA
TTCTGTAATCAATAAACAAGCGAAACAATTTTATAATGTTCAAGTTTTTA
CTGGTGATCCGTGGTATGCTGCAGATGATTATATTTCGAACGTTGAATTC
AGTAATTATTTGTAAAAATAAAATAAGAAACAAATTTTGTAGTTCTTCAA
CAAAAGGCTGGAAAGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050046-exon-scaffold_167-1575043694:503623..503716 | TCONS_00050046-exon-scaffold_167-1575043694:503623..503716 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1575043694:503036..503126 | TCONS_00050046-exon-scaffold_167-1575043694:503036..503126 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1575043694:502049..502553 | TCONS_00050046-exon-scaffold_167-1575043694:502049..502553 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1510915933:503623..503716 | TCONS_00050046-exon-scaffold_167-1510915933:503623..503716 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1510915933:503036..503126 | TCONS_00050046-exon-scaffold_167-1510915933:503036..503126 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1510915933:502049..502553 | TCONS_00050046-exon-scaffold_167-1510915933:502049..502553 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1491911889:503623..503716 | TCONS_00050046-exon-scaffold_167-1491911889:503623..503716 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1491911889:503036..503126 | TCONS_00050046-exon-scaffold_167-1491911889:503036..503126 | Clytia hemisphaerica | exon |
| TCONS_00050046-exon-scaffold_167-1491911889:502049..502553 | TCONS_00050046-exon-scaffold_167-1491911889:502049..502553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:502049..503716 - |
Blast
The following BLAST results are available for this feature:
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