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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050048 ID=TCONS_00050048|Name=TCONS_00050048|organism=Clytia hemisphaerica|type=transcript|length=686bp
TAAAAACTCAAATGTAGATAAAACCGAGGTTGCAGATGGAAAAGGATTGG
AAGAATAGTACAATATTGTATTGTATCATTCTAATGTACCAATCCAAATG
TTGCTTTTCGCTAAGATGTGAATCAAACATACCACCTAATGTTCATGGCG
TTCACCCGAGCATGTTAGTCGACTCAGAAATGAAAGTAACACAGAACAAT
TTGATCCATACGATTCCTCGAATCTCAACTGAATGGTCTTTATCACTAAC
GATACGAATCGAAAAGTCTCGATTAGGATATTGGAAAAGTATTATTCATT
TCTCAACCGGTGAAAATTATAGTCGGTTGCCGGCAATTTTTCTTTCCCCA
AGTACTGACACTTTACACATTTGCTATGACATCAACGGTAATGTAAATCA
TTGTCACGATCCACCAATCAAGATTGGGAAAAGTCATCACGTGACAGTTC
ATCAGAGGTATATCTCAAATGGATATTACAAATATTTCATCATATTCGAT
GGATTGGAAGTACATTCTGTAATCAAAAAACAAGCTCAACAATTTTATAA
TGTTCAAGTTTTTACTGGTGATCCGTGGTATGCTGCAGATGATTATATTT
CGAATGTTGAATTCACTAATTATTTGTAATCATTTGTAATATTCTGATAA
TGAATTGATACTTTTATGGTAATTGTAAATAAAAAG Run BLAST on NCBI protein sequence of TCONS_00050048-protein >TCONS_00050048-protein ID=TCONS_00050048-protein|Name=TCONS_00050048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MEKDWKNSTILYCIILMYQSKCCFSLRCESNIPPNVHGVHPSMLVDSEMK
VTQNNLIHTIPRISTEWSLSLTIRIEKSRLGYWKSIIHFSTGENYSRLPA
IFLSPSTDTLHICYDINGNVNHCHDPPIKIGKSHHVTVHQRYISNGYYKY
FIIFDGLEVHSVIKKQAQQFYNVQVFTGDPWYAADDYISNVEFTNYL Run BLAST on NCBI transcript from alignment at scaffold_167:506007..508168- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050048 ID=TCONS_00050048|Name=TCONS_00050048|organism=Clytia hemisphaerica|type=transcript|length=2162bp|location=Sequence derived from alignment at scaffold_167:506007..508168- (Clytia hemisphaerica)
TAAAAACTCAAATGTAGATAAAACCGAGGTTGCAGATGGAAAAGGATTGG
AAGAATAGTACAATATTGTATTGTATCATTCTAATGGTATGCATTTTCTT
TTGACAAACTAAAATAGTCTTGAAGAGAGAAATTTTGTCTGAAATAGATT
TTACATTTCTGCTAGAATCATTAGTGTCAATCACTCAAAGTTTTCTTACT
GTATGAGGTTTTTTCCATGCAGAACCTGTCAGATTATAATCTGGCAGGAT
CCAGGTTTCACCATCAATGATCTCAATTTTCAGGATCCAATTTCTACTAA
GAATTGGTATCTAACATGGGGTGTCCATTTTTCTTCGTTAAACGTCAAGA
TTTGTTTTTGCTGTTTTTTTTGACAGGCTTGTACTGTAGCAGGATTTTCT
CATACTTATTTTTAGTACCAATCCAAATGTTGCTTTTCGCTAAGATGTGA
ATCAAACATACCACCTAATGTTCATGGCGTTCACCCGAGCATGTTAGTCG
ACTCAGGTAAATATTTTGTGGTAAAAACTTAATTTTCTAATGTAACCACT
CTCAAGTATAAAAAATTTTGCATCTCCGTAGAAACCTTAAACATATAATT
GAAAAAGTACTTCTGAGCCCATTTCTTAAATTATTGTGCCCGTGAACAAT
GTAAATAATTTTATGGCCAATCCATAGGAAAGGGAAAGAAATTGATAGCA
CCTATGGGGACGATCAGATCGGGCATAGAATTAACCCTGGTAAAAATTCT
TGAAAAGATCTGAAAAGATCGTTGAAGATCTTTCAAGATCTTTAACAAGT
AAGAATCTTATAAAATCTTTGTAAGATCTTACAACGATTCTTAGGCAATC
TCGAAAATTTCTTCCAACAAAAAGATCTTTAAAGATCTTGTAAAGAAATC
GTTAAGAATTGTCAAGATTCTTCCCGCATATTTATAGTAAGATAATTATT
ATTTCTTNNNNNNNNNNNNNNNNNNNNNTGTATTAATGAAATAGTTGATT
AATGACGAGGTCATCAGTTGAATGCTGTCACTCGAGCGAAGCTTTCGGCC
CTTATTCAATAACTGAACGGGGATAGTAGTAAAATCCCGTCAGCGACCGT
AGTGCAGTGGTAGAGCATCCGTCTACGGTGCGCAAGGTTGTGGGTTCAAC
CCCCGGTCGGGTCACACCAAAGATTCCCAAAATGGTACTTGAAGCCTCTC
TGCTTGATGCTCACCAAGTAAGCGGAGCAATCCCCCCCTACCTTCAGGTA
GATAGCTATCGAAAGTGGAGCCTTCAGGTCACCTCCGACTTACTTTTACT
TAAGATTCCGTCAAGATCTTGAATCACTGTAAGGGNNNNNNNNNNNNNNN
NNNNNNNNNNNAATCACTGTAAGGGACAAGAATCTTATTCAAAACTTATA
AAAGAGTCTTATCAGATCGTTAAAGATCTTGAAAGATCTTGGCACGTTCG
TAGTAAGAAACTGAAAAGGAATAAGCAAAGTTTCTTGATAAGATCTTTTC
AAGAACTTTTCAAGAATTTTTACCAGGGAAGATATCTTGAATTGCAGCTG
ACGTGTTTTCGAAGCGCCCCTTTATAGGCCGTCTGCTGCACAAATCTGAT
GTGATAAATGTATTTAGAGCATACAACATATCATTGTTAAATTATATCCT
TAGAAATGAAAGTAACACAGAACAATTTGATCCATACGATTCCTCGAATC
TCAACTGAATGGTCTTTATCACTAACGATACGAATCGAAAAGTCTCGATT
AGGATATTGGAAAAGTATTATTCATTTCTCAACCGGTGAAAATTATAGTC
GGTTGCCGGCAATTTTTCTTTCCCCAAGTACTGACACTTTACACATTTGC
TATGACATCAACGGTAATGTAAATCATTGTCACGATCCACCAATCAAGAT
TGGGAAAAGTCATCACGTGACAGTTCATCAGAGGTATATCTCAAATGGAT
ATTACAAATATTTCATCATATTCGATGGATTGGAAGTACATTCTGTAATC
AAAAAACAAGCTCAACAATTTTATAATGTTCAAGTTTTTACTGGTGATCC
GTGGTATGCTGCAGATGATTATATTTCGAATGTTGAATTCACTAATTATT
TGTAATCATTTGTAATATTCTGATAATGAATTGATACTTTTATGGTAATT
GTAAATAAAAAG Coding sequence (CDS) from alignment at scaffold_167:506007..508168- >TCONS_00050048 ID=TCONS_00050048|Name=TCONS_00050048|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_167:506007..508168- (Clytia hemisphaerica)
AAATGAAAGTAACACAGAACAATTTGATCCATACGATTCCTCGAATCTCA
ACTGAATGGTCTTTATCACTAACGATACGAATCGAAAAGTCTCGATTAGG
ATATTGGAAAAGTATTATTCATTTCTCAACCGGTGAAAATTATAGTCGGT
TGCCGGCAATTTTTCTTTCCCCAAGTACTGACACTTTACACATTTGCTAT
GACATCAACGGTAATGTAAATCATTGTCACGATCCACCAATCAAGATTGG
GAAAAGTCATCACGTGACAGTTCATCAGAGGTATATCTCAAATGGATATT
ACAAATATTTCATCATATTCGATGGATTGGAAGTACATTCTGTAATCAAA
AAACAAGCTCAACAATTTTATAATGTTCAAGTTTTTACTGGTGATCCGTG
GTATGCTGCAGATGATTATATTTCGAATGTTGAATTCACTAATTATTTGT
AATACCAATCCAAATGTTGCTTTTCGCTAAGATGTGAATCAAACATACCA
CCTAATGTTCATGGCGTTCACCCGAGCATGTTAGTCGACTCAGATGGAAA
AGGATTGGAAGAATAGTACAATATTGTATTGTATCATTCTAATGAAATGA
AAGTAACACAGAACAATTTGATCCATACGATTCCTCGAATCTCAACTGAA
TGGTCTTTATCACTAACGATACGAATCGAAAAGTCTCGATTAGGATATTG
GAAAAGTATTATTCATTTCTCAACCGGTGAAAATTATAGTCGGTTGCCGG
CAATTTTTCTTTCCCCAAGTACTGACACTTTACACATTTGCTATGACATC
AACGGTAATGTAAATCATTGTCACGATCCACCAATCAAGATTGGGAAAAG
TCATCACGTGACAGTTCATCAGAGGTATATCTCAAATGGATATTACAAAT
ATTTCATCATATTCGATGGATTGGAAGTACATTCTGTAATCAAAAAACAA
GCTCAACAATTTTATAATGTTCAAGTTTTTACTGGTGATCCGTGGTATGC
TGCAGATGATTATATTTCGAATGTTGAATTCACTAATTATTTGTAATACC
AATCCAAATGTTGCTTTTCGCTAAGATGTGAATCAAACATACCACCTAAT
GTTCATGGCGTTCACCCGAGCATGTTAGTCGACTCAGATGGAAAAGGATT
GGAAGAATAGTACAATATTGTATTGTATCATTCTAATGAAATGAAAGTAA
CACAGAACAATTTGATCCATACGATTCCTCGAATCTCAACTGAATGGTCT
TTATCACTAACGATACGAATCGAAAAGTCTCGATTAGGATATTGGAAAAG
TATTATTCATTTCTCAACCGGTGAAAATTATAGTCGGTTGCCGGCAATTT
TTCTTTCCCCAAGTACTGACACTTTACACATTTGCTATGACATCAACGGT
AATGTAAATCATTGTCACGATCCACCAATCAAGATTGGGAAAAGTCATCA
CGTGACAGTTCATCAGAGGTATATCTCAAATGGATATTACAAATATTTCA
TCATATTCGATGGATTGGAAGTACATTCTGTAATCAAAAAACAAGCTCAA
CAATTTTATAATGTTCAAGTTTTTACTGGTGATCCGTGGTATGCTGCAGA
TGATTATATTTCGAATGTTGAATTCACTAATTATTTGTAATACCAATCCA
AATGTTGCTTTTCGCTAAGATGTGAATCAAACATACCACCTAATGTTCAT
GGCGTTCACCCGAGCATGTTAGTCGACTCAGATGGAAAAGGATTGGAAGA
ATAGTACAATATTGTATTGTATCATTCTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050048-exon-scaffold_167-1575043694:508083..508168 | TCONS_00050048-exon-scaffold_167-1575043694:508083..508168 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1575043694:507663..507753 | TCONS_00050048-exon-scaffold_167-1575043694:507663..507753 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1575043694:506007..506515 | TCONS_00050048-exon-scaffold_167-1575043694:506007..506515 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1510915933:508083..508168 | TCONS_00050048-exon-scaffold_167-1510915933:508083..508168 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1510915933:507663..507753 | TCONS_00050048-exon-scaffold_167-1510915933:507663..507753 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1510915933:506007..506515 | TCONS_00050048-exon-scaffold_167-1510915933:506007..506515 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1491911889:508083..508168 | TCONS_00050048-exon-scaffold_167-1491911889:508083..508168 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1491911889:507663..507753 | TCONS_00050048-exon-scaffold_167-1491911889:507663..507753 | Clytia hemisphaerica | exon |
| TCONS_00050048-exon-scaffold_167-1491911889:506007..506515 | TCONS_00050048-exon-scaffold_167-1491911889:506007..506515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:506007..508168 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013320 | ConA-like_dom |
Blast
The following BLAST results are available for this feature:
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