TCONS_00050058 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00050058
Unique Name	TCONS_00050058
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2528

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_167:680349..684840-
coding sequence from alignment at scaffold_167:680349..684840-

transcript sequence

>TCONS_00050058 ID=TCONS_00050058|Name=TCONS_00050058|organism=Clytia hemisphaerica|type=transcript|length=2528bp
CTAAGCCATAtagttcattttcagatatgttATAATTCATAATCATAATA
TTTAATGGTGAATATTGGAAAAATTGGTggcaaaaattaaataataacaG
CTCACTTTTCAACATATATTTAGTgatatattgaaaattatttaaagtga
AATATATATTGAAAATATCAATTGAAACGAAAATGGCAACAACATCAACA
GCTCAATCATCAGTCACTGTCCAAGAAGaggacgaagaagaaaatgatga
aGTGCCAACTTTGAGACTGACAATgccaaaaaatgataaaaaagtgaAAT
GGGGAGAGAGTGTGGTAGACAATGAAAATATGggcaaaaaatcttcaaaa
tGTTGTTGTATATATAAGAAGCCAAGGATGTTTGGAGAGTCCTCATCAGA
GGATGACTCGAGTGATGAAGAAAACGATGACAAATGTAAAGGACCAAAAG
ATTAtcataaaaattctaaaaagaaaaagaagaaagcaaAATCAGCGTGT
AACTCAAATGATTGCAATACTTGTGATTGATGGATAGAAGACAAACTGTA
TGGACAAATAAGTTTTCCAGCTGAAAATAGTCTGGTTAATATCTTAAATT
CATACAGAAGATTTTGGTGAACaaaaatatctaattaaaaaaatagaTCA
ATATCCATGAGGAGAATTCACATGCCATAGTTTGTACTACGTAACCCGTT
TATGGGGTGCATTAGCACGCACATTTAAGCCTCAAGTCATTAGTACTGGA
AGGACTCAGAGCACAGTCAGGCAAATGGTTTAAAGTTTATCTAATAAtgt
aaatagttttataatatcataattttatttaatactttGTAGTGTTTTCT
TTCTAAGACCTATAATAAACATGCCTCAAGTCATAAAAACGTTACTGCAT
AGGGTGTTGCTTGCTAATTGAGAAGCTTTAGAGGacggaaattaattttt
tttctaaattcagATTTGTGTAGGTGGTGCAGATTTTTAACGCAAAGTAA
ATATCTATTGGTAAcattaaaagataattacttCGTAACAAAATTGTGCT
GTCCTACACAATTTTTCCGACACCCCCTGAGAATGCTACTGTAAACTATA
ATACAATCATTTCCATATTCTGTTTTAATTTAGCAATATTGCAAGTTTTT
ATTATTGAAATCCTGCATTTTCCAGTTAATTTTGATTGCTTTCATGTAGT
GTTCatattttttagtgaaaataataacaaaaaagaagaaattacaaaac
aacaacaaaaatataaatatgGAATATTGAAATTTCACAATTGGAAAGTA
TAAATGGATGATTTATTTACGAAGAAAAGTAAAGAAGAATCATATTACAA
ACTTTTAAATTGTGTTCCAACATCTAATAAAGAACAAATTACTGCTGAAT
ATCGTGTCTTGGCAAAACAATATCATCCTGATAAAAATAAAGATACTGGT
GATGAGAATGCAGGAAAGGAGGGAAACAAAGATTCATCAGACACGTACTT
AAAGATAACTAAAGCTTATAAAGTATTGAGTGATGATTTGCTACGTAAAG
ATTATGACAAATGGATGAATTCTGGTTTATGTGTTACTTATGAGAAATGG
ACTGAACTTTCTAAAGCAACTCACACCTCACTCCACTGGGGATGTATGAA
AAATGAACAACTCGCACTGACTAAAGatgataaaaatgaaaaagacaaGC
TTTCTGGATCTTCAtcttcaaaaaatgctgactcaGCTTGTGAAAATTCC
ACCACCAACAACAGTAGTGCATTGAACCCTTCCATGGTATCAACTTTGGC
CAATTCATCATCAAACAGTGGGATGAAAAGACCAACAGGTGGCTTCAACA
TTGGCAGTAGAAGAAGCAAGTTCcggaaatatgaaatttgattttctatt
ACCATTTGGTCGAGTTGCAGGAGGCTGTGTGGCCCATTCTAGCAACTATT
GACGTTTCAAAGCGGCCCGTCAGCatcttgaactgactacccaattcccc
tcacatggcaagGGTTGATCTGGGCGAAGATTTGTTTACTTAACAATtaa
accgctgcgagtgggattcgaacctcATTCGCATGTGCAGTAACCATTGA
TCACGTGTCAAACATGAAACATAATAGAAACAGTCCTTCATCTTgtgcaa
tttttgtttttgtttcacaataatgtttttgtagcATCAAGGAACTTAGT
agcattgagaaaaaaagtttttgggccaatttgagcccaaaaaatgccaa
aaaatgacTTTGGACTTTGTTAAAAATCTGTTCAAGAAGTTATGGCACCA
ACTTgctaaattttaaattattcagtttttgtttttacattgCCTTCATT
AAACTTtcattattcgttttataaacaggtaggtccataaaagtatcgct
tgtttcaTTATAGCCAACTGCAGAGTTCAAAGCATGTTCTTCAACTTTCT
TCCTTGTACAATCTATATTTATTCCCTCATTCtttgaattgaaatttgaa
acttgATGCTGGATTTTACtcaaagttt

Run BLAST on NCBI

protein sequence of TCONS_00050058-protein

>TCONS_00050058-protein ID=TCONS_00050058-protein|Name=TCONS_00050058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MDDLFTKKSKEESYYKLLNCVPTSNKEQITAEYRVLAKQYHPDKNKDTGD
ENAGKEGNKDSSDTYLKITKAYKVLSDDLLRKDYDKWMNSGLCVTYEKWT
ELSKATHTSLHWGCMKNEQLALTKDDKNEKDKLSGSSSSKNADSACENST
TNNSSALNPSMVSTLANSSSNSGMKRPTGGFNIGSRRSKFRKYEI

Run BLAST on NCBI

transcript from alignment at scaffold_167:680349..684840-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00050058 ID=TCONS_00050058|Name=TCONS_00050058|organism=Clytia hemisphaerica|type=transcript|length=4492bp|location=Sequence derived from alignment at scaffold_167:680349..684840- (Clytia hemisphaerica)
CTAAGCCATATAGTTCATTTTCAGATATGTTATAATTCATAATCATAATA
TTTAATGGTGAATATTGGAAAAATTGGTGGCAAAAATTAAATAATAACAG
CTCACTTTTCAACATATATTTAGTGATATATTGAAAATTATTTAAAGTGA
AATATATATTGAAAATATCAATTGAAACGAAAATGGCAACAACATCAACA
GCTCAATCATCAGTCACTGTCCAAGAAGAGGACGAAGAAGAAAATGATGA
AGTTAGTGTATCAATTGTTGTTTTCTTTACTTAATGAATCTATAGTATCC
ATCCCTCTTTAACACCCATCTCTGTAATTTTACTTAGGGTAGCATTAGTC
TTCGTATTTCCTCATCAAAAAGCAATTGTCAAAGTTGTTTTTGAGTTTCA
CACAGTTTCACATTCCATCTATTTTCACTATTTTAGGTGCCAACTTTGAG
ACTGACAATGCCAAAAAATGATAAAAAAGTGAAATGGGGAGAGAGTGTGG
TAGACAATGAAAATATGGGCAAAAAATCTTCAAAATGTAAGTAACAAATA
TACGTATTGGAAAAGAGGGCTACTGTAGTAGTAAGGATTCGCATTCATAA
AACCTTTGAATTTCCCATTGATCAATTTTAGGTTGTTGTATATATAAGAA
GCCAAGGATGTTTGGAGAGTCCTCATCAGAGGATGACTCGAGTGATGAAG
AAAACGATGACAAATGTAAAGGACCAAAAGATTATCATAAAAATTCTAAA
AAGAAAAAGAAGAAAGCAAAATCAGCGTGTAACTCAAATGATTGCAATAC
TTGTGATTGATGGATAGAAGACAAACTGTATGGACAAATAAGTTTTCCAG
CTGAAAATAGTCTGGTTAATATCTTAAATTCATACAGAAGATTTTGGTGA
ACAAAAATATCTAATTAAAAAAATAGATCAATATCCATGAGGAGAATTCA
CATGCCATAGTTTGTACTACGTAACCCGTTTATGGGGTGCATTAGCACGC
ACATTTAAGCCTCAAGTCATTAGTACTGGAAGGACTCAGAGCACAGTCAG
GCAAATGGTTTAAAGTTTATCTAATAATGTAAATAGTTTTATAATATCAT
AATTTTATTTAATACTTTGTAGTGTTTTCTTTCTAAGACCTATAATAAAC
ATGCCTCAAGTCATAAAAACGTTACTGCATAGGGTGTTGCTTGCTAATTG
AGAAGCTTTAGAGGACGGAAATTAATTTTTTTTCTAAATTCAGATTTGTG
TAGGTGGTGCAGATTTTTAACGCAAAGTAAATATCTATTGGTAACATTAA
AAGATAATTACTTCGTAACAAAATTGTGCTGTCCTACACAATTTTTCCGA
CACCCCCTGAGAATGCTACTGTAAACTATAATACAATCATTTCCATATTC
TGTTTTAATTTAGCAATATTGCAAGTTTTTATTATTGAAATCCTGCATTT
TCCAGTTAATTTTGATTGCTTTCATGTAGTGTTCATATTTTTTAGTGAAA
ATAATAACAAAAAAGAAGAAATTACAAAACAACAACAAAAATATAAATAT
GGAATATTGAAATTTCACAATTGGAAAGTATAAATGGATGATTTATTTAC
GAAGAAAAGTAAAGAAGAATCATATTACAAACTTTTAAATTGTGTTCCAA
CATCTAATAAAGAACAAATTACTGCTGAATATCGTGTCTTGGCAAAACAA
TATCATCCTGATAAAAATAAAGATACTGGTGATGAGAATGCAGGAAAGGA
GGGAAACAAAGATTCATCAGACACGTACTTAAAGTAGGAAAAACAATATA
TACAGTGTGCCCCAAAAAAACAAGCACATTTTTTATATGAAGTAAAATGT
TCATAATTTATACAAAATTTTATGACTTGTATGCTTAATATTTAAATCTC
AAAAACCTATTCAATCATCTTTAGAAACTGAATATCCATTGATTGAACAG
AGAATTGTAATCTTATTTCAATAATTCTAAAACTGTTATTGAATGAGTTT
TGATGGCTTTAATTTGTACTAGTAATAACATGGTTTAGAGTACGTGAGGG
CTATTTTGAAGTGTTTTCAATGAAACGAGGGGTTATTAATCCAAAATCAC
CCGAGAATACCATGTTATTCCGCGTTAATTATATGGTCAAAAAAAGAATT
GAAGAACACTCAATCGCTATTCTTTTCGAAACTTATGAAAACATTCGAAA
CTATAAAAAAACATTCGACACTGACACTCTTATTTTGATTGGCTTAAAAA
CTTAGTACGATATTTTGTTAACCAATCAAAATATTGTACGATACTTTTCT
TTCAACCAATAGAAATTTTTGTTTACATCAGGGCGATTACAAAAAAGCGG
GGCTATTGCGGATTTATCGCCCCGCTCGTCCTTTACAAATCTAAGCTAAA
TGTAATCAACCATATAATTAATATAGAAATTTATCTGCTTTTTTTGGGAC
ACACTGTATGTATTTATTACTACAATAATCTTTCCTTAAAACCTTGATTC
CTATATTCTCTGAAACATCAACAAAGTTTAAAATATTTTGTGTGCAAAAA
ATGAAAGATGCAAGCCCAGTGATAGCGGCATCTAGATAATTCCTTTACAC
ACTAGATTGGCTAATTGCTAAACTGTGTCCAGTTTTAGAGATATCAAGTC
AACTGGTGTCTTCTGTTTTACGTCAGATTTTAGAGCTTTTTTAATGTTTT
CATACATTTTGTCGCCAGTGAGTCACATGTACATAGAGACTTTGTTTGTT
TGACAAATTTGCTGATTACAGTTATGGACCCCCAGAAAATTAGATGCAAT
AATACAATATTAGACCCTTCAATTCAATTAAATATATGAATCAGTGGAGC
GCTAGATTCGGACTAAACGTCGACCTGAAATTCACCAAGTAAAATAAGTT
CTTGTTAAAATGGGCTTTTCCAGAAAAAATTTGAATATATATGGGGGGGT
TGAGGATATAACGTTTTTTAGAAATTTACACCCCGACCATAGTGATTATG
AACCCCCCCTCCCGGACAACAGTTCTTACCCCCTGAACAAGCATCAGTTG
ACCCCCCGGACATTCAAAATTACCCCTAAACAGAGAAAATTGGCCCTCAA
AACAAGGCAAATTTTGCAGATTTTTCACTACCCCTCCCCTCCCAAACAAA
ATATCCAATGTATCCTCCACCCCCCCCATGTACAAAAATTTTCTGGAAGA
GCCCAATGAGTTCCTTAAAATGAGTCTTAAAATGAGTTTGTAAATTCTTT
TCCAGGATAACTAAAGCTTATAAAGTATTGAGTGATGATTTGCTACGTAA
AGATTATGACAAATGGATGAATTCTGGTTTATGTGTTACTTATGAGAAAT
GGACTGAACTTTCTAAAGCAACTCACACCTCACTCCACTGGGGATGTATG
AAAAATGAACAACTCGCACTGACTAAAGGTAGTGTAGGAGTGTATAATCT
TTGTTTATTTTGTGAGCATTTGATCGATACATGTGGGGTTTAGAGAGGCT
CAGTTACATACTCTTGAGCAATAAGCTTCATAAGTGAGTTAACATACTCT
AAACGTATCTGGCAGCCACTTCTGATTATACAAGAAATATGGTATTATTC
AATAAAATGACTTTTTCTTTTCTATTTATATATCATTTAGATGATAAAAA
TGAAAAAGACAAGCTTTCTGGATCTTCATCTTCAAAAAATGCTGACTCAG
CTTGTGAAAATTCCACCACCAACAACAGTAGTGCATTGAACCCTTCCATG
GTATCAACTTTGGCCAATTCATCATCAAACAGTGGGATGAAAAGACCAAC
AGGTGGCTTCAACATTGGCAGTAGAAGAAGCAAGTTCCGGAAATATGAAA
TTTGATTTTCTATTACCATTTGGTCGAGTTGCAGGAGGCTGTGTGGCCCA
TTCTAGCAACTATTGACGTTTCAAAGCGGCCCGTCAGCATCTTGAACTGA
CTACCCAATTCCCCTCACATGGCAAGGGTTGATCTGGGCGAAGATTTGTT
TACTTAACAATTAAACCGCTGCGAGTGGGATTCGAACCTCATTCGCATGT
GCAGTAACCATTGATCACGTGTCAAACATGAAACATAATAGAAACAGTCC
TTCATCTTGTGCAATTTTTGTTTTTGTTTCACAATAATGTTTTTGTAGCA
TCAAGGAACTTAGTAGCATTGAGAAAAAAAGTTTTTGGGCCAATTTGAGC
CCAAAAAATGCCAAAAAATGACTTTGGACTTTGTTAAAAATCTGTTCAAG
AAGTTATGGCACCAACTTGCTAAATTTTAAATTATTCAGTTTTTGTTTTT
ACATTGCCTTCATTAAACTTTCATTATTCGTTTTATAAACAGGTAGGTCC
ATAAAAGTATCGCTTGTTTCATTATAGCCAACTGCAGAGTTCAAAGCATG
TTCTTCAACTTTCTTCCTTGTACAATCTATATTTATTCCCTCATTCTTTG
AATTGAAATTTGAAACTTGATGCTGGATTTTACTCAAAGTTT

Coding sequence (CDS) from alignment at scaffold_167:680349..684840-

>TCONS_00050058 ID=TCONS_00050058|Name=TCONS_00050058|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_167:680349..684840- (Clytia hemisphaerica)
ATGATAAAAATGAAAAAGACAAGCTTTCTGGATCTTCATCTTCAAAAAAT
GCTGACTCAGCTTGTGAAAATTCCACCACCAACAACAGTAGTGCATTGAA
CCCTTCCATGGTATCAACTTTGGCCAATTCATCATCAAACAGTGGGATGA
AAAGACCAACAGGTGGCTTCAACATTGGCAGTAGAAGAAGCAAGTTCCGG
AAATATGAAATTTGAGATAACTAAAGCTTATAAAGTATTGAGTGATGATT
TGCTACGTAAAGATTATGACAAATGGATGAATTCTGGTTTATGTGTTACT
TATGAGAAATGGACTGAACTTTCTAAAGCAACTCACACCTCACTCCACTG
GGGATGTATGAAAAATGAACAACTCGCACTGACTAAAGATGGATGATTTA
TTTACGAAGAAAAGTAAAGAAGAATCATATTACAAACTTTTAAATTGTGT
TCCAACATCTAATAAAGAACAAATTACTGCTGAATATCGTGTCTTGGCAA
AACAATATCATCCTGATAAAAATAAAGATACTGGTGATGAGAATGCAGGA
AAGGAGGGAAACAAAGATTCATCAGACACGTACTTAAAATGATAAAAATG
AAAAAGACAAGCTTTCTGGATCTTCATCTTCAAAAAATGCTGACTCAGCT
TGTGAAAATTCCACCACCAACAACAGTAGTGCATTGAACCCTTCCATGGT
ATCAACTTTGGCCAATTCATCATCAAACAGTGGGATGAAAAGACCAACAG
GTGGCTTCAACATTGGCAGTAGAAGAAGCAAGTTCCGGAAATATGAAATT
TGAGATAACTAAAGCTTATAAAGTATTGAGTGATGATTTGCTACGTAAAG
ATTATGACAAATGGATGAATTCTGGTTTATGTGTTACTTATGAGAAATGG
ACTGAACTTTCTAAAGCAACTCACACCTCACTCCACTGGGGATGTATGAA
AAATGAACAACTCGCACTGACTAAAGATGGATGATTTATTTACGAAGAAA
AGTAAAGAAGAATCATATTACAAACTTTTAAATTGTGTTCCAACATCTAA
TAAAGAACAAATTACTGCTGAATATCGTGTCTTGGCAAAACAATATCATC
CTGATAAAAATAAAGATACTGGTGATGAGAATGCAGGAAAGGAGGGAAAC
AAAGATTCATCAGACACGTACTTAAAATGATAAAAATGAAAAAGACAAGC
TTTCTGGATCTTCATCTTCAAAAAATGCTGACTCAGCTTGTGAAAATTCC
ACCACCAACAACAGTAGTGCATTGAACCCTTCCATGGTATCAACTTTGGC
CAATTCATCATCAAACAGTGGGATGAAAAGACCAACAGGTGGCTTCAACA
TTGGCAGTAGAAGAAGCAAGTTCCGGAAATATGAAATTTGAGATAACTAA
AGCTTATAAAGTATTGAGTGATGATTTGCTACGTAAAGATTATGACAAAT
GGATGAATTCTGGTTTATGTGTTACTTATGAGAAATGGACTGAACTTTCT
AAAGCAACTCACACCTCACTCCACTGGGGATGTATGAAAAATGAACAACT
CGCACTGACTAAAGATGGATGATTTATTTACGAAGAAAAGTAAAGAAGAA
TCATATTACAAACTTTTAAATTGTGTTCCAACATCTAATAAAGAACAAAT
TACTGCTGAATATCGTGTCTTGGCAAAACAATATCATCCTGATAAAAATA
AAGATACTGGTGATGAGAATGCAGGAAAGGAGGGAAACAAAGATTCATCA
GACACGTACTTAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031703	XLOC_031703	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00050058-protein	TCONS_00050058-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_167	supercontig	scaffold_167:680349..684840 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.83052	3.70847	0.0255171	0.0401235	19.9738	14.0611	11.3723	14.7603	11.263	11.2911	10.7562	9.82252	8.27921	5.63187	6.26704	7.39235	10.7812	10.7868	8.02189	8.89336	11.1814	8.71437	8.73009	13.5775	10.9494	12.0142	13.5797	11.6742	9.64175	9.80269

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001623	DnaJ_domain

Blast

[Close]

BLAST of TCONS_00050058 vs. Swiss-Prot (Human)
Match: DJC12 (DnaJ homolog subfamily C member 12 OS=Homo sapiens GN=DNAJC12 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.311e-16
Identity = 58/208 (27.88%), Postives = 101/208 (48.56%), Query Frame = 2

Query: 1304 MDDLFTKKSKE-ESYYKLLNCVPTSNKEQITAEYRVLAKQYHPDKNKDTGDENAGKEGNKDSSDTYLKITKAYKVLSDDLLRKDYDKWMNSGLCVTYEKWTELSKATHTSLHWGCMKNEQLALTKDDKNEKDKLXXXXXXKNADSACEN--STTNNSSALNP-SMVSTLANSSSNSGMKRPTGGFNIGSRRS---------KFRKYEI 1888
            MD +   +S++ E YY LL C   S+ EQI AE++V A + HPDK+ +          N  + +T+ K+ KA ++L+++  R  YD W  S + + +++W  L+ +  TS+HW     + L L + DK    K+     ++  +   E   ST   +    P  +  +++  +S+S       G+++  R S         KFR YEI
Sbjct:    1 MDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPE----------NPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKTSMHWVVRGKKDLMLEESDKTHTTKMENEECNEQRERKKEELASTAEKTEQKEPKPLEKSVSPQNSDSSGFADVNGWHLRFRWSKDAPSELLRKFRNYEI 198

The following BLAST results are available for this feature:

BLAST of TCONS_00050058 vs. Swiss-Prot (Human)

BLAST of TCONS_00050058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DJC12	2.311e-16	27.88	DnaJ homolog subfamily C member 12 OS=Homo sapiens...	[more]

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TCONS_00050058 (transcript) - C. hemisphaerica