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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050078 ID=TCONS_00050078|Name=TCONS_00050078|organism=Clytia hemisphaerica|type=transcript|length=3169bpRun BLAST on NCBI protein sequence of TCONS_00050078-protein >TCONS_00050078-protein ID=TCONS_00050078-protein|Name=TCONS_00050078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=988bp KRMEKSPEKMNKDQHEVKEDLKSESKPLETINPFDCQENNADSLVKIRTKRun BLAST on NCBI transcript from alignment at scaffold_167:914612..921594- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050078 ID=TCONS_00050078|Name=TCONS_00050078|organism=Clytia hemisphaerica|type=transcript|length=6983bp|location=Sequence derived from alignment at scaffold_167:914612..921594- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_167:914612..921594- >TCONS_00050078 ID=TCONS_00050078|Name=TCONS_00050078|organism=Clytia hemisphaerica|type=CDS|length=11868bp|location=Sequence derived from alignment at scaffold_167:914612..921594- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050078 vs. Swiss-Prot (Human)
Match: RBP2 (E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 2.646e-33 Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 2
Query: 1541 FNNEEDDDILVEAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECIQIV 1978
+ E+ DDI E +VQ+ + LVTG+E+E+ ++ R KL+RFD+E QWKERGLG LKI + + R+LMRR+QV K+CANH + +TM KPLS S + W ++ +DFS+ + K E A FKT E+A+EFK+KF+EC +++
Sbjct: 2003 YKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLS-GSDRAW-MWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 2146 HSP 2 Score: 122.094 bits (305), Expect = 9.823e-28 Identity = 61/140 (43.57%), Postives = 94/140 (67.14%), Query Frame = 2
Query: 1553 EDDDILVEAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECIQ 1972
++DI E IV + +++ + +G+E+EE +F+ R+KLYR+D + QWKERG+G +KI +N R+LMRRDQV K+CANH + TME KPL+ + + ++T +D+++ E K E FKT E+A FK+ F+EC Q
Sbjct: 2906 HNEDIHFEPIVSLPEVE-VKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSN--NALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQ 3042 HSP 3 Score: 118.242 bits (295), Expect = 1.327e-26 Identity = 77/234 (32.91%), Postives = 121/234 (51.71%), Query Frame = 2
Query: 1550 EEDDDILVEAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKPLSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECI------QIVGGKSATASTPVQKATTPNATKVTPEVSKSPSFSFQTSGPSNAFSNMNGFSFTSLNGNQATSASAPAFSLGHK------ATEKAKP 2215
EE D E +V + L + +G+ENE+ +F +R+KLYR+D + QWKERG+G +KI + R++MRRDQV KLCANH + M + + K + L+T DF++ E+K E+ FK ++A FK+ FDE ++ + +STP + A V E ++ + Q ++A S + S TS +A S P F G + ++EK+KP
Sbjct: 2303 EERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNM--KGTERVWLWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKDSLITPHVSRSSTPRESPCGKIAVAVLEETTRERTDVIQGDDVADATSEVE-VSSTSETTPKAV-VSPPKFVFGSESVKSIFSSEKSKP 2532 HSP 4 Score: 108.612 bits (270), Expect = 1.098e-23 Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 2
Query: 1574 EAIVQVSKLDSLVTGKENEETIFENRSKLYRFDSENKQWKERGLGVLKITRTKGQNSCRVLMRRDQVHKLCANHAVVSTMEFKP--LSEKSYKHWTLFTQADFSEEEQKPEYFCAIFKTSEIAKEFKEKFDECIQIV 1978
E +V + + TG+E+EE F NR+KL+RFD E+K+WKERG+G +KI R K R+LMRR+QV K+CANH + M+ P S++S+ ++ D+++E KPE FKT E A FK KF+E I+
Sbjct: 1173 EPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSF----VWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEEAQSIL 1305 The following BLAST results are available for this feature:
BLAST of TCONS_00050078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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