TCONS_00050086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050086
Unique NameTCONS_00050086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length869

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050086 ID=TCONS_00050086|Name=TCONS_00050086|organism=Clytia hemisphaerica|type=transcript|length=869bp
GGTAGTGGTGGAAGTTGGAAGTGAAGTAAAATAATGCAGAAATCAAAGAT
ATCAAATTCGAAAAACTTGACATAAAATGGGTTGTGGCTCCTCAAAAGTT
GCTGTTAGTACAGTACTCGTAAATGGCACACAGGACGGCGCCATACTTAA
AGATGCTAACGGAAATATCACACAATCAAAACCTATTGGTTCTAATGAAA
AAGAGAGACTTGGCTCTCAGCTAGGATCAAGTAATCGATTAGGTCCTGTT
GAAAGTCTTGGTATTTTTCGAAAACGCAAGAAGAATTTGTATCAATCTCT
GGATGTCTTTGAACAAATCGATCAACGTTCTGTCACGGTGCCATCTACTG
TTTCAAGGACTGCTCAATCTTTAGTTCAATATTTGACTGAACCTTACGAA
GCACCCCTATTCAAACTACGTGCAATCTGGATATGGGTCACTCATAATAT
CTCCTATGAcgtcaattcttttttcaatccaagtgaaaagaaaagctcCC
AGCTAGATGCATCGGACGTGCTATCAAGCGGAAAAGCTATTTGCTCAGGT
TATGCTAATCTGATAAATGTTTTAGCAGAatcagcTGGAATTAAAACTGA
GCGCGTGGATGGTTGGTCTAAAGGCTACAATTATCAATATGGTCAAAAGT
TTGGAGACATGAGTCCGAATCATGCATGGAATGTCGTAAAACTGAACAAT
GATTGGTGGCTGCTAGATTCAACATGGGGCGCTGGCTACGTAGACAAAGA
GAAGAATTTCGTACGACAGTATAGTGAACATTATTTTCTAACGGATCCTA
AACAATTCATTTTCGATCATTGTCCGACAGACATGCATTGGCAGCTATTG
GAAGAAATGATCGCCGTTG
Run BLAST on NCBI

transcript from alignment at scaffold_167:951139..957819-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050086 ID=TCONS_00050086|Name=TCONS_00050086|organism=Clytia hemisphaerica|type=transcript|length=6681bp|location=Sequence derived from alignment at scaffold_167:951139..957819- (Clytia hemisphaerica)
GGTAGTGGTGGAAGTTGGAAGTGGTGAGTAGTGTATAATTATTTTCCTGC TTTATAATCTCATAATCTCAGGAAGCTTTTAGCACCAGTGAAAAAATGAC TAAACTTATACTTTTGCTGCTCTCTGCTGCATGAACAGGGGAATTTCAAT GTATATAACTACTTTTCACCAAATTAAACTAATCAGCTAATCACACATTT GAAAGGTAGGTTCTTGATTACATCACATCCCAAACCAAATGAAGCATTGT ACCGTGAAGTCCATAACTTGCATCAGTAGTGGAGAGAAAGTTTTGTTGCA TCGCCCACAAATGAATGACCTGGATGGTCATTAAAATACAAAGTTAAATC AAAACAAAATGGTTGAGTCGAACTGCGAGCGGAGCAGCTTTGATTGGTCA GTTATTTGATGGCTATCTATGCAAGTTTCCCTCCACTGATGCGAGTTACC CGACACGGTACCATTTTAGAGAATCTCATATTTGCCGTGCAAGTAATTTT GGCAAGTTACTCGCCGACAGAATCCCGGGTAAATGAAACAGCATGGTTGG ATAATAAAAAATCATGCGAGATCATGCATTTCAAGATGGCAGGAATTCAG ATGTTTCTCGATGGGCTGCGCTGGGACGTGCAACCTCAAATTTAATAATG ATAATATTAAACATATATGATGCATGACATCACTTATGATTAGGGGATAT GTATTTTCCACCTGCAAATTTTGTAAATCAGGTGTATGCAATGACTTCAG GGTAGATAAGAGCTGCAAGCGGAGCTGCATAGTTCATCGTAGTTCATTTG TTTTGAAATTTTGCTGCTTTTACTGGTCAGTCATTTGATGGCTATGCAAT TTTCCCTTCATTGATGAAAGTTACCCAACTTCATGGTATGGTATTGACCA TGAAATTCCGGTGTCAGTACAGGTCATGTCACGGCCCGGTTGTTCAAGTA AAAGTGGATTAGTGGCTGATAAGCTTAAATTTTTCCAAAAATCTCTATTA GCGCTGATTAAGACAGGCAACAGAATCCACAGTTGTTAGGAAAAAAATTA GGCTAAAAGTTGTGATTAAATTCCGATTAAATAGACCAAATTTTAATCAT TCTCTGACCCACAATAAAGCTGTTATATATATTATGTTATAAATCATTAA AAGCAGAATCTTGAGTAGATTTTTATTCTTAAGAAGTGATGGCTTAAAAA GAACTTACAAAATCAAATTATGGTTTGTTTGACCTAACCTAACATAAGGT TAGCCCTGTATTTGCCTTAATTTAAAGATTAAGAAAATGCTGGGAAAAAC ATTTCTAATTACTTATTTCTACTTTCTACTATTATGTCCTCTAGTTGCTT AAATGAGTTTGCAACCAAAGTGGAAGGCAAGCCAAAGGCTCTAAGCTATC TACCCAAAGGAAAGGGAGGGTTTTGGATGAACAACCAGCTGTAAGATCAT CACATTTTCCATCTCATAGTTTTGTTATGGTATTAAAATCAAACTTATAT TTTTGCCACCAATATTAAGTAAATCAATTAGTTGTAGGCCATACTCTGCT TAGTTTTATCAAAATTTCAATATTTGAACCTGTACTTTGATTGGGATAAA TCTGCGCGAAAAATTCCAGAATGTGGAAATCACGAAATTTAGTACTGACA GTACTTGTGAAACACGTTTCCATGAAAAAATTAGTACCCACGAAAATATA TACAATATCAAAAATAGATATTGCAGTTTGTTTATTCTGAAATTTTAAGA TAGAAACATAATTTTAGAAACACACAATGTCTTAGTTATTCATTTGAAGA AAAGATTTATAATAAGGACTTAAAAAAAATGTTTCCTTGGATTTTCATTT CTATTGTAGTTTCCATATTAAAACAACTTATACAAATAAGTAATTCTGTT TTGTTTTTGCTTTTTAAAAGACTTTTTACTAGATCAGATATATGGTACTT TCTTTGATATAACTATATTAAGGGGAAAGATATTCCAAATCATTTATCAA ACAGTGCAATTTCAAAAGCAAACTTTTTGCACCTTTTTTCTGCTCTATCA TATTTCATCTAGTTGCAAATTTTTTGTTGCTATGGTAATATCTTGTTTAT TACTTCTCAAATTGGATAGGACAGCGGATACAAAACCATCACTCTGGCTT CACTGTGTACATTTGGGGTAAAATAAAGTGATTTGGCTAGTTTGAATTCT CAAATGGTTAGGGCACTTGGTGTCTCGATATACTTGTTTTGTTCAAGACT TTTTAATGTACCTTAATATTGAATACACCTGGACCATTTCTTCAAGAAAG GAATCTATTTAGTTTGTATCTGAGAAAAAAAACTCCTAAAAGACCTATCC ATCTCATTTAAAATTGCATTGAAAATACTGTATCTGATGATCATGTAATT GTTTTTTTGGTTTAATTTCAGCTTGCTTGGCCTTGTCTAATGAGGAATTT TATATTCAGAAAATATTTTATTTTTACGGATCTTTTTCTTCATAGAATCA CTTAATTTGGAGTGTCCTAAACAGATGCTTTGGATTTAAAAGTAGCTTTA CTTTTGGGACTTGATAAGGGAATGTAGGGGAATCAAGTCTCTATACGATG CTTTGATTTAACACTTTTATTTGAGTTTGGATTTGGAGATGTGTACAGGA ATATCTTTTAATAAATTAATCTATCTTTGAAATTATATGAGTGATTTATA TCTAAAAAGCAGTATGAAAATTTTATTTTTCAATTAATAGAAAGCCCTCT GCCTACCCTATGCTGGTATGGTCAAAAGGAATTTCATTTTAGGATTTGTG CATAATTGATATTCTAGTTCCAATAGAATCGTTCTTATTGCTTTACTGGT CAAAATCTGGTCTTTATTATAATCTTGTTCTTTTCAAGTATTAAAGCGAA TCTTTTGTTTTAAGAGGTTTTTCTATCGAAATAAAGTTTGAGAGAGAGCT TAATGTAAGAGGAACCTAGCCTATAGGAGTATTTCTGAACTTCTAAACAA ACACTATATTAGAACCTTGGCTGAATAGGATCATCATCTTCAATTCAAGT AGACTATTTCATTTTAAGGTATTTAAACTCAAGAAAGTTTGCTATTACTT CTATCATGAAGCATAAGTCATATAGTCTATGAACAGCTTTTGGATGTCGT TCTACACAAGGGAAGTTACAAAACAAACTCAAAGTTTCTTTGACAAAACA CTCCTTCATTAATTTGAGTACCTTAATGGATCAGTTCAAGGACTACTAGA ATCGCTTAAGCACAGCATGGGAAAGTTTGTCGATATGTAGCGAGGGTACT TGAAAGTCTAGGTTTTATTTGCACTTTAGATATAAAATACTAATGACAGA ACATTCTACTTTTCATATTTTTGCTTCTTTTATAATTTTAGAAGTAAAAT AATGCAGAAATCAAAGATATCAAATTCGAAAAACTTGACATAAAATGGGT TGTGGCTCCTCAAAAGTTGCTGTTAGTACAGTACTCGTAAATGGCACACA GGACGGCGCCATACTTAAAGATGCTAACGGAAATATCACACAATCAAAAC CTATTGGTTCTAATGAAAAAGAGAGACTTGGCTCTCAGCTAGGATCAAGT AATCGATTAGGTCCTGTTGAAAGTCTTGGTATTTTTCGAAAACGCAAGAA GAATTTGTATCAATCTCTGGATGTCTTTGAACAAATCGATCAACGTTCTG TCACGGTTGGTTTCTTTCAGCTTTCCATCCTAGAACGATTGAATTTTCAT AAAAACGCCCTGTTCAGTTTTGCTACCTTAAGGGAACTTATTTTGGCGGG AACTAATTTTGGCGAATTTGGCGAATTTAGACGAAATTCGCCAAATTTAG TTCCCGCCAAAATTAAATATTTTGCTCACTCGCCAAAATAAGTTCCCGCC AAAATTAGATTTTTTGTTTCCTTGCCTAAATAACCCCTGAAATTCATCAA AATTGCTCAAAATAAGGTAAAATAGAACAGATTTACGCTGTCATTCGCCA AAATTGGTTCCCGCCAAAATTTAAAAAATTCACTATTCGCCAAAATTAGT TCTCGCCAAAATTAAAATTTTTAAAGATTTTCACTGCTCGCCAAAATTAG TTCCGGCCAAATAAGTTCCCTTAAGGTATATATTTTTTAGGAAATGTTTT ATTCGTGTAAAAATCTGCTTGTAGAATCACAACAAATGTGCTTATAAGCA CGCAAGCACGCCTTAGATACCTTTAACCACCACGGACTTATTCATTTTTT TCTATGTTCAACTGTTATATATCTTTTGTCAAACGATGCAATTAACGTGC AAAAGAGATTAGCGCAAAGGTTGATGGGATTGGAACTCGTACAAACACAT CGAGAGTAATGATTATGTCAAAAGTAAAATCTATTTTTAGATTCAGCACG GTGCGCTATTTAAAGTCGGCATTCGGCAGTGTTGACCCAAAAAGCGACTT AAGTATGAGTAGAGTCATCATCAATTCTCTCGAAAACCGAAAATAAATTG CCCAAAAAGTCAATCATCTCCTAATGCATATCATAGGAGTAAGTGACAAG CAACCATCCACAGCCTTAATAAATAAAATTCCGACCTAAAACTCAGACAC AGATCGAAAAATTTTTGCGGGCCTTTTTGTACGTTTCGACGCACTTTTAT TGATTTACACATCATTTCTGTGTCTAGCTATGCAATCACTAGCCTATACT AGACGTCACCCGCGTTTGTTTTACGCAATTAAATCGTCAAAGTGGAACTC ACTAAGAAACGAGATGAAAAATCCCGGTTTTTAGTGAGGTGCTCGCTATG CAATCACTGGTTTATTAGCCCATACCGCTAAAATATTTTTAATTTATTTG GTTTGTGCTTTATTGTAGGTGCCATCTACTGTTTCAAGGACTGCTCAATC TTTAGTTCAATATTTGACTGAACCTTACGAAGCACCCCTATTCAAACTAC GTGCAATCTGGATATGGGTCACTCATAATATCTCCTATGACGTCAATTCT TTTTTCAATCCAAGTGAAAAGAAAAGCTCCCAGTTAGATGCATCGGACGT GCTATCAAGCGGAAAAGCTATTTGCTCAGGTTATGCTAATCTGATAAATG TTTTAGCAGAGTAAGTTGCTTTTATTTTGTTTTGTTAATTGTACCTTTTG GTTGTGTTTCATAATGAGTATCAACAAAAAGCTTCCTTTTGGTTTCTGAA ATTCTGCCCCTATGCAACAACTTTTTTTAATATGTGCTGTTTTATAGTCA ATTGTTGCTTTTTGAGTGTATTTTACTATTATAGGGAATAAGGGGCTGTA AATTTGTAGTTTGGTTGAACTATTATGAAAAAACATTCGCAAATGTTGTG TTAATATCCCTTAAGTAGGAGATCCGCCTCTAGACGTCGGCTAAATTTTA TTGTTTTGACACCCCTGTCTCAAAGAACTTACCAGTGGATACCCTTAAAA CCACATACCCCTTAAAACCCACAATGTTGCATTTTTGGCTTTCATAACTA CCAGATTTAATTTTATGTNNNNNNNNNNNNNATTTATTTGGTTTGTGCTT TATTGTAGGTGCCATCTACTGTTTCAAGGACTGCTCAATCTTTAGTTCAA TATTTGACTGAACCTTACGAAGCACCCCTATTCAAACTACGTGCAATCTG GATATGGGTCACTCATAATATCTCCTATGACGTCAATTCTTTTTTCAATC CAAGTGAAAAGAAAAGCTCCCAGCTAGATGCATCGGACGTGCTATCAAGC GGAAAAGCTATTTGCTCAGGTTATGCTAATCTGATAAATGTTTTAGCAGA GTAAGTTGCTTTTATTTTGTTTTGTTAATTGTACCTTTTGGTTGTGTTTC ATAATGAGTATCAACAAAAAGCTTCCTTTTGGTTTCTGAAATTCTGCCCC TCTGCAACAATAGTACCGTGGTTACGCCCCAATAATTTTTTTAAGGATAA GTTTTTTCCTCATTTTGTCATTTAAAGACTTTTTAATATGTGCTGTTTTT TAGTCAATTGTTGCTTTTTGAGTGTATTTTACTATTATAGGGAATAAGGG GCTGTAAATTTGTAGTTTGGTTGAACTATTATGAAAAAACATTTAAGTAG GAGATCCGCCTCTAGACGTCGGCTAAATTTTATTGTTTTGACACCCCTGT CTCAAAGAACTTACTAATTTTTCAGTTGTTTTAACTTTTAACGTGAATAA TAATGCTTTTTCATTAAATTTCCTTTTTTAATGAATTGGGGTTTTCAAAA AAATGTCATTCCAGTGAGAATAAGAACCCAGTGTACTTCCCAAAGATGTT GAAAATATAATTATCTCACCGAAAACAAGTGTTTGGTCGAATTTTCCTCT GGTGTAATAAAGGTAAAAAATTGGTTTCTATTATTTTACAGATCAGCTGG AATTAAAACTGAGCGCGTGGATGGTTGGTCTAAAGGCTACAATTATCAAT ATGGTCAAAAGTTTGGAGACATGAGTCCGAATCATGCATGGAATGTCGTA AAACTGAACAATGATTGGTGGCTGCTAGATTCAACATGGGGCGCTGGCTA CGTAGACAAAGAGAAGAATTTCGTACGACAGTATAGTGAACATTATTTTC TAACGGATCCTAAACAATTCATTTTCGATCATTGTCCGACAGACATGCAT TGGCAGCTATTGGAAGAAATGATCGCCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031711XLOC_031711Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050086-exon-scaffold_167-1575043694:957797..957819TCONS_00050086-exon-scaffold_167-1575043694:957797..957819Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1575043694:954115..954428TCONS_00050086-exon-scaffold_167-1575043694:954115..954428Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1575043694:952020..952261TCONS_00050086-exon-scaffold_167-1575043694:952020..952261Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1575043694:951139..951428TCONS_00050086-exon-scaffold_167-1575043694:951139..951428Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1510915933:957797..957819TCONS_00050086-exon-scaffold_167-1510915933:957797..957819Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1510915933:954115..954428TCONS_00050086-exon-scaffold_167-1510915933:954115..954428Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1510915933:952020..952261TCONS_00050086-exon-scaffold_167-1510915933:952020..952261Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1510915933:951139..951428TCONS_00050086-exon-scaffold_167-1510915933:951139..951428Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1491911889:957797..957819TCONS_00050086-exon-scaffold_167-1491911889:957797..957819Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1491911889:954115..954428TCONS_00050086-exon-scaffold_167-1491911889:954115..954428Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1491911889:952020..952261TCONS_00050086-exon-scaffold_167-1491911889:952020..952261Clytia hemisphaericaexon
TCONS_00050086-exon-scaffold_167-1491911889:951139..951428TCONS_00050086-exon-scaffold_167-1491911889:951139..951428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:951139..957819 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296764 0.0119798 0 0.0381091 18.1873 15.5686 11.2753 10.7228 10.1015 11.738 4.37213 11.2806 1.33406 0.520848 0.118803 0.182971 2.16086 0.229502 1.15337 2.88996 0.53075 2.89018 2.69776 2.1333 17.8546 14.4661 5.2274 0.683237 0.984939 0.0511631
Blast
BLAST of TCONS_00050086 vs. Swiss-Prot (Human)
Match: KY (Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 3.784e-36
Identity = 78/197 (39.59%), Postives = 106/197 (53.81%), Query Frame = 2
Query:  269 RKRKKNLYQSLDVFEQIDQRSVTVPSTVSRTAQSLVQYLTEPYEAPLFKLRAIWIWVTHNISYDVNSFFNPSEKKSSQLDASDVLSSGKAICSGYANLINVLAESAGIKTERVDGWSKGYNYQYGQKF-GDMSPNHAWNVVKLNNDWWLLDSTWGAGYVDK-EKNFVRQYSEHYFLTDPKQFIFDHCPTDMHWQLLE 853
            R   K++   L  FE++D  +  V  T       LV  L +     L ++RAIWIW+ H+I YD+ +     EK       +D+L + K  C GYA L   +   AG++   V G+SKG+ YQ GQ F G+   +HAWN V L   W L+DSTWG+G VD     F   Y+E YFLT P  FI DH P + +WQLL+
Sbjct:  139 RSSLKSMSLDLQQFEKLDIYASQV--TAKSGLDELVSDLLQEAHTDLERVRAIWIWICHHIEYDIAA---AQEKDRQAFKPTDILRTQKTNCDGYAGLFERMCRLAGVQCMTVPGYSKGFGYQTGQSFSGEF--DHAWNAVYLEGRWHLVDSTWGSGLVDTITSKFTFLYNEFYFLTHPALFIEDHFPDNKNWQLLK 328          
The following BLAST results are available for this feature:
BLAST of TCONS_00050086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KY3.784e-3639.59Kyphoscoliosis peptidase OS=Homo sapiens GN=KY PE=... [more]
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