|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050095 ID=TCONS_00050095|Name=TCONS_00050095|organism=Clytia hemisphaerica|type=transcript|length=1795bp
GCAAAATCGTTCTGCTAATTAAGACAAGATGGCTGACAATTCTCATGGAT
GGAATTGTTTTGGATGTAATGGAAGAGTTACTGTTGGTCAAAGTCAACGA
TCTTGGATGTGGTTTCGTATTGACGTTGCtgtcaaaagatttttaaacgc
AAGCGAATCATTTTCTGGTCTAAAAGCAGTACGGTCAGTCTAAAATCAGC
ACTCGCAAACCTTCAGAGGTACATACTTACAGAAGAAAAAGCCAAGGAGA
TTGAAAGAGAAGCAACCAGTTCTATTAAAGTTATTAGCCAGCACATTTCA
AACAGTTTTCAAGGAAACCAAATCAAATTTTCGTTGACCGGTGGATTTGC
AGAAGGGTATGGAGTGCCATTATGGTCAAAATGGCTTTTAAttgaaggag
aagaaaaacTTGACAAAAGTCATGCTCTGATTAGTGATTTCGATTTTATG
TTTGAACTTGAGAATATTTTTGCTGGATACGATCCGTCGGATGATGTTGA
TTTTCTCATAACAACAAGAGACTGCCAACTAGGATTTACTAAACTAATGG
TACATAATCAAGATTCGGGATCAAGATTTGGCTGTGATGGGGAATACCTT
TCAGCTAAGTTTGTTAAGCAAAAAATCTACACATCCGTTTTGGAAACTGA
CATGGCGATTTACCCTggattcaaaaattatttaccACTTTGTTGCTTGA
GATCCTCTAATGAACATTATGTTGAGACAAAAATATCTGGCCCTGCtatt
aaattgaaaatatgcaATACTGGAGTTTCACATCAGGATGTATTACATAC
AGGCAAACATAGTTTTAGTGATATCAGAATGAATTCAAAGTATCAACCAG
AAACAAATCATTTATTAGCTGATATCACATTTAGCATCTGGTGTAAAGAG
TTTCCACGCAGCTCAAATTTTAACAAGAGAAACGACCGACGATGGCCGAA
ACCTGAAGACGTAGAGCGAATCGTAAATATGGGGTGTCATTTGGTTCCCA
AATCGCAGGAAGAAAACGATACAAAGGAGTTGACTTGGAGATTCTCTTTC
TCAAAAGCTGAAGTTGAACTCTCAAAACTCATCAATTATACTGCTCGAAA
ATGTTTTCTTGCGTTGAAAGTGATCAGTAAAGATCACCTCTCATTTACAT
GCTCTCGACTATCATCTTATCATCTTAAAACAATTTTCCTGAACATGGTG
GAGGAAACTGGTCTGGAAGCTTGGACTGAAGAAAACATTGAAACCATGTT
CAGATCTTTGTTAGGAGAAGTGAAAAGTGCAATTGACAGTAAAAGATGTC
AACATTTTTGGATTCCCGAGATCAACTTATTTGAAGACATCCCAGACAGA
AAGTTATTTTCcctttcaaagatttttgataagGTTCTTGAAAATCCAGC
ACCGtatattcaacataaaaagaaagttgataagGAGCATGACAACCAGT
CAAGAGATGTCTGCGTTGATTTAGAGGATGTTGAAATGATTGGAAATAAT
TTGACCGAACCATTGATACCTAGATCTGCAAGATGATATCTGTGAGATAG
CAAATCAAGCGAAAATACAACACTCTCTTGTCTGTCTTCAATGAACGAGA
gcgatttttgctgattttagCTGACAAATGTTTTCCTAAAATTAGATAAG
TAAAGGCACTATTTAACTTTCAGatttattttgtaatttcataaaatttt
aaactcttcaaaatttgtcaaatactattcaaattttattttgagataTT
TCCTTGTCTTTTTCGTTCAGGTATTACAAActtcaggcccggcgg Run BLAST on NCBI transcript from alignment at scaffold_167:990389..993519- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050095 ID=TCONS_00050095|Name=TCONS_00050095|organism=Clytia hemisphaerica|type=transcript|length=3131bp|location=Sequence derived from alignment at scaffold_167:990389..993519- (Clytia hemisphaerica)
GCAAAATCGTTCTGCTAATTAAGGCAAGTTTCTTTTTTTGCGCTTTTCCC
CGAAATTTAGGTCGGTGCTTCGAGTACATTTGCTCGAGAAGAGCTGAATA
TATATTATCTGGGTCAGAGTACTGGCTAATCAAGCGAATTTTTTTCAAAT
TCATCCATCGTCTTCTTCATGCAAATTCTCATACTCAAAGATCATGCTTG
AACAGTCAAAAAATTTCTAAAAGTTCTTATAAATCTCAAACTAAAACTGC
TTACAGGCTTTGTCTGAACACGCATGCAAATATCAAGACACTTTTATTTC
TCTTAGCTTCGCGTTTCAACGTGACAGGGTGACAGATTCCACTTAGAAAT
AATGATTTTTAGATCTTGTCGATAGAGGTTTTTTAGCAAGCGAAAGATTT
GCTATTCAAAGAGAAATCGCTTAGGATCAGATCTAAAACAAATTATGATG
ACAATTGTATTTTTGTGTGTTGTTGTAAAGATTCTTGGAAATAAAAACTG
GTTTATTCCATCAATATTTATTTAGAAAGCAAAATTTTCAGCTGATTGCG
TAGTCTGTGAATCCCTGGTCAAATCACATGATCGAAACGTGAGCCAAAAA
GTATTTTTTGCGAACATAAGTAAAAATTCCAGACCCGTTTTTTATACATA
CTTTCCTGATCTAGCAAGTTTACTTTTGTCTCCTTGAGTAAGATCAACAA
TGCAATGGCAGTGTGGATGAAATTTTGAGTGATGACTTTCATGTGACAAA
AGCTTGTTTATATACGAGAGAAAAATGCTACAGTAGTACATTCACAAGAA
AGATTCGAAGAAGTAGTTCAGAAGATTATAGAGCAATTTTATGTAAGTGT
TCTAATTCTGCTTTAATTGTTCGTTTCTTTTATATACTTTGTACTCTTTT
CGAAATCTCGACTGCTACAAAAAACTTTCTACATTTTGACAACAATCTGA
GATCAAACAAGGCCTATTTTTTCAAATTTTTTTGAAAATTTGGTTTTTAC
TTGACCAACCTCAAAGATTTGTTCAGGTCAAAGGGGTTGTCAAAAATTTG
GTGAAAGTTTGAATGTGATATTTTTTTGGTAAAGAATGTTACACATCAAA
AATTGGATCAAGAAGGTGACAATTTTTGTTAGCTTTAAACCCGGCATCCT
AAGAGGGTTAAACAGGTTTCGTTTGAAATGGAAGTATTTTTCATCTTTCT
TCTTCCAGACAAGATGGCTGACAATTCTCATGGATGGAATTGTTTTGGAT
GTAATGGAAGAGTTACTGTTGGTCAAAGTCAACGATCTTGGATGTGGTTT
CGTATTGGTGCGTACCTCTTCTTAATATTAGCGTTATTCGCAATACCAAA
AGAGTTATATGAAAAATGGAATCGCTTGACGCCTGACGAACGCTTGATGT
ATTTTGGTTTTTATGCTGCTGAAATTGGAATCACTGTCCTTTTAGTTTTT
CCTTTCAGACGTTGCTGTCAAAAGATTTTTAAACGCAAGCGAATCATTTT
CTGGTCTAAAAGCAGTACGGTCAGTCTAAAATCAGCACTCGCAAACCTTC
AGAGGTACATACTTACAGAAGAAAAAGCCAAGGAGATTGAAAGAGAAGCA
ACCAGTTCTATTAAAGTTATTAGCCAGCACATTTCAAACAGTTTTCAAGG
AAACCAAATCAAATTTTCGTTGACCGGTGGATTTGCAGAAGGGTATGGAG
TGCCATTATGGTCAAAATGGCTTTTAATTGAAGGAGAAGAAAAACTTGAC
AAAAGTCATGCTCTGATTAGTGATTTCGATTTTATGTTTGAACTTGAGAA
TATTTTTGCTGGATACGATCCGTCGGATGATGTTGATTTTCTCATAACAA
CAAGAGACTGCCAACTAGGATTTACTAAACTAATGGTACATAATCAAGAT
TCGGGATCAAGATTTGGCTGTGATGGGGAATACCTTTCAGCTAAGTTTGT
TAAGCAAAAAATCTACACATCCGTTTTGGAAACTGACATGGCGATTTACC
CTGGATTCAAAAATTATTTACCACTTTGTTGCTTGAGATCCTCTAATGAA
CATTATGTTGAGACAAAAATATCTGGCCCTGCTATTAAATTGAAAATATG
CAATACTGGAGTTTCACATCAGGATGTATTACATACAGGCAAACATAGTT
TTAGTGATATCAGAATGAATTCAAAGTATCAACCAGAAACAAATCATTTA
TTAGCTGATATCACATTTAGCATCTGGTGTAAAGAGTTTCCACGCAGCTC
AAATTTTAACAAGAGAAACGACCGACGATGGCCGAAACCTGAAGACGTAG
AGCGAATCGTAAATATGGGGTGTCATTTGGTTCCCAAATCGCAGGAAGAA
AACGATACAAAGGAGTTGACTTGGAGATTCTCTTTCTCAAAAGCTGAAGT
TGAACTCTCAAAACTCATCAATTATACTGCTCGAAAATGTTTTCTTGCGT
TGAAAGTGATCAGTAAAGATCACCTCTCATTTACATGCTCTCGACTATCA
TCTTATCATCTTAAAACAATTTTCCTGAACATGGTGGAGGAAACTGGTCT
GGAAGCTTGGACTGAAGAAAACATTGAAACCATGTTCAGATCTTTGTTAG
GAGAAGTGAAAAGTGCAATTGACAGTAAAAGATGTCAACATTTTTGGATT
CCCGAGATCAACTTATTTGAAGACATCCCAGACAGAAAGTTATTTTCCCT
TTCAAAGATTTTTGATAAGGTTCTTGAAAATCCAGCACCGTATATTCAAC
ATAAAAAGAAAGTTGATAAGGAGCATGACAACCAGTCAAGAGATGTCTGC
GTTGATTTAGAGGATGTTGAAATGATTGGAAATAATTTGACCGAACCATT
GATACCTAGATCTGCAAGATGATATCTGTGAGATAGCAAATCAAGCGAAA
ATACAACACTCTCTTGTCTGTCTTCAATGAACGAGAGCGATTTTTGCTGA
TTTTAGCTGACAAATGTTTTCCTAAAATTAGATAAGTAAAGGCACTATTT
AACTTTCAGATTTATTTTGTAATTTCATAAAATTTTAAACTCTTCAAAAT
TTGTCAAATACTATTCAAATTTTATTTTGAGATATTTCCTTGTCTTTTTC
GTTCAGGTATTACAAACTTCAGGCCCGGCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050095-exon-scaffold_167-1575043694:993497..993519 | TCONS_00050095-exon-scaffold_167-1575043694:993497..993519 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1575043694:992213..992311 | TCONS_00050095-exon-scaffold_167-1575043694:992213..992311 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1575043694:990389..992061 | TCONS_00050095-exon-scaffold_167-1575043694:990389..992061 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1510915933:993497..993519 | TCONS_00050095-exon-scaffold_167-1510915933:993497..993519 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1510915933:992213..992311 | TCONS_00050095-exon-scaffold_167-1510915933:992213..992311 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1510915933:990389..992061 | TCONS_00050095-exon-scaffold_167-1510915933:990389..992061 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1491911889:993497..993519 | TCONS_00050095-exon-scaffold_167-1491911889:993497..993519 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1491911889:992213..992311 | TCONS_00050095-exon-scaffold_167-1491911889:992213..992311 | Clytia hemisphaerica | exon |
| TCONS_00050095-exon-scaffold_167-1491911889:990389..992061 | TCONS_00050095-exon-scaffold_167-1491911889:990389..992061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:990389..993519 - |
Blast
The following BLAST results are available for this feature:
|
