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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050166 ID=TCONS_00050166|Name=TCONS_00050166|organism=Clytia hemisphaerica|type=transcript|length=1013bp
TTGTGCAGAATTTCCAGGACTTTTCAATGTTAAGTTGTTCCGAGTTCAGG
AATGTCACCTTCATTAGCATTAACGCGGATTGGAATGTTTACGATCATAC
TTTTGGTCACCGTTTCTTCATGCAAGGATTAAACGATTTGCTTGACAACG
AAGCATGTTTTATGGTGAACTACTTCAACGGTTTTGACATAGTGAGATTG
AGAAATAACAACAATATTAATCAATTTAAATTTGGAATAACATTTCATGA
CTTTCGATATGTGAACGAAAAGCGTAGAATCGCCGAACTAATGAAGCAGC
TTTACGATGAGAAGATCATGGGAAATGATTTTGACATTAAACAAACTCTT
GTCCTTAGCATAGAATATATGATTGATTtcgatcatattttcaaaaatct
tgagtTATTACAGAACGAGAGACAATGGACAATTATTGTTTTCAGGATTC
TCACTTTGTATAAACCAATAGATTGGCTTCCATtgaatcgaaatattcaa
acaGAGGTTAGGTTTGGGGATGATTTTCTTTTGCAACACCCGGTCATTAG
GACACTGTTCGATGTCATAAAAAATCCGGACTACGATGTTTACGATATGT
CGTACCGTTGGATCATGTctaagaaaaatcttttcactGATGATTGCATG
AAGAAGGTTCAAAAGATATTCGTCATTGTTGATCGAATGAAATTTACTTA
TATTCCAATAGCGTCGGCTatcttaaaaaaagtaaatgccCATCGTTCGA
AACTAAACCAAGATCCGTTAGAAATTCATTTTTCTATGCAATTTGATGGC
ATAATGCCATCATCTGATGGGCATTTGACTTTAACTAATTTTAGATGGGA
AAACCCTCCCCTTTACGGCTGGTACAAGGAAAAGAACAAAAGCCATGTTT
ACATTCATATTTTAGCCGATAATCAGTTTCGTTGTCAAGAAATTATTAAA
AGGCAAGATTTTCATTACGGTTATTTTTTATCGAACTGGAGTGAGGAATG
CTTCCGTGTTGTG Run BLAST on NCBI protein sequence of TCONS_00050166-protein >TCONS_00050166-protein ID=TCONS_00050166-protein|Name=TCONS_00050166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
VQNFQDFSMLSCSEFRNVTFISINADWNVYDHTFGHRFFMQGLNDLLDNE
ACFMVNYFNGFDIVRLRNNNNINQFKFGITFHDFRYVNEKRRIAELMKQL
YDEKIMGNDFDIKQTLVLSIEYMIDFDHIFKNLELLQNERQWTIIVFRIL
TLYKPIDWLPLNRNIQTEVRFGDDFLLQHPVIRTLFDVIKNPDYDVYDMS
YRWIMSKKNLFTDDCMKKVQKIFVIVDRMKFTYIPIASAILKKVNAHRSK
LNQDPLEIHFSMQFDGIMPSSDGHLTLTNFRWENPPLYGWYKEKNKSHVY
IHILADNQFRCQEIIKRQDFHYGYFLSNWSEECFRVV Run BLAST on NCBI transcript from alignment at scaffold_167:563411..564423 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050166 ID=TCONS_00050166|Name=TCONS_00050166|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at scaffold_167:563411..564423 (Clytia hemisphaerica)
CACAACACGGAAGCATTCCTCACTCCAGTTCGATAAAAAATAACCGTAAT
GAAAATCTTGCCTTTTAATAATTTCTTGACAACGAAACTGATTATCGGCT
AAAATATGAATGTAAACATGGCTTTTGTTCTTTTCCTTGTACCAGCCGTA
AAGGGGAGGGTTTTCCCATCTAAAATTAGTTAAAGTCAAATGCCCATCAG
ATGATGGCATTATGCCATCAAATTGCATAGAAAAATGAATTTCTAACGGA
TCTTGGTTTAGTTTCGAACGATGggcatttactttttttaagatAGCCGA
CGCTATTGGAATATAAGTAAATTTCATTCGATCAACAATGACGAATATCT
TTTGAACCTTCTTCATGCAATCATCagtgaaaagatttttcttagACATG
ATCCAACGGTACGACATATCGTAAACATCGTAGTCCGGATTTTTTATGAC
ATCGAACAGTGTCCTAATGACCGGGTGTTGCAAAAGAAAATCATCCCCAA
ACCTAACCTCtgtttgaatatttcgattcaATGGAAGCCAATCTATTGGT
TTATACAAAGTGAGAATCCTGAAAACAATAATTGTCCATTGTCTCTCGTT
CTGTAATAactcaagatttttgaaaatatgatcgaAATCAATCATATATT
CTATGCTAAGGACAAGAGTTTGTTTAATGTCAAAATCATTTCCCATGATC
TTCTCATCGTAAAGCTGCTTCATTAGTTCGGCGATTCTACGCTTTTCGTT
CACATATCGAAAGTCATGAAATGTTATTCCAAATTTAAATTGATTAATAT
TGTTGTTATTTCTCAATCTCACTATGTCAAAACCGTTGAAGTAGTTCACC
ATAAAACATGCTTCGTTGTCAAGCAAATCGTTTAATCCTTGCATGAAGAA
ACGGTGACCAAAAGTATGATCGTAAACATTCCAATCCGCGTTAATGCTAA
TGAAGGTGACATTCCTGAACTCGGAACAACTTAACATTGAAAAGTCCTGG
AAATTCTGCACAA Coding sequence (CDS) from alignment at scaffold_167:563411..564423 >TCONS_00050166 ID=TCONS_00050166|Name=TCONS_00050166|organism=Clytia hemisphaerica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_167:563411..564423 (Clytia hemisphaerica)
CACAACACGGAAGCATTCCTCACTCCAGTTCGATAAAAAATAACCGTAAT
GAAAATCTTGCCTTTTAATAATTTCTTGACAACGAAACTGATTATCGGCT
AAAATATGAATGTAAACATGGCTTTTGTTCTTTTCCTTGTACCAGCCGTA
AAGGGGAGGGTTTTCCCATCTAAAATTAGTTAAAGTCAAATGCCCATCAG
ATGATGGCATTATGCCATCAAATTGCATAGAAAAATGAATTTCTAACGGA
TCTTGGTTTAGTTTCGAACGATGggcatttactttttttaagatAGCCGA
CGCTATTGGAATATAAGTAAATTTCATTCGATCAACAATGACGAATATCT
TTTGAACCTTCTTCATGCAATCATCagtgaaaagatttttcttagACATG
ATCCAACGGTACGACATATCGTAAACATCGTAGTCCGGATTTTTTATGAC
ATCGAACAGTGTCCTAATGACCGGGTGTTGCAAAAGAAAATCATCCCCAA
ACCTAACCTCtgtttgaatatttcgattcaATGGAAGCCAATCTATTGGT
TTATACAAAGTGAGAATCCTGAAAACAATAATTGTCCATTGTCTCTCGTT
CTGTAATAactcaagatttttgaaaatatgatcgaAATCAATCATATATT
CTATGCTAAGGACAAGAGTTTGTTTAATGTCAAAATCATTTCCCATGATC
TTCTCATCGTAAAGCTGCTTCATTAGTTCGGCGATTCTACGCTTTTCGTT
CACATATCGAAAGTCATGAAATGTTATTCCAAATTTAAATTGATTAATAT
TGTTGTTATTTCTCAATCTCACTATGTCAAAACCGTTGAAGTAGTTCACC
ATAAAACATGCTTCGTTGTCAAGCAAATCGTTTAATCCTTGCATGAAGAA
ACGGTGACCAAAAGTATGATCGTAAACATTCCAATCCGCGTTAATGCTAA
TGAAGGTGACATTCCTGAACTCGGAACAACTTAACATTGAAAAGTCCTGG
AAATTCTGCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050166-exon-scaffold_167-1491911889:563411..564423 | TCONS_00050166-exon-scaffold_167-1491911889:563411..564423 | Clytia hemisphaerica | exon |
| TCONS_00050166-exon-scaffold_167-1510915933:563411..564423 | TCONS_00050166-exon-scaffold_167-1510915933:563411..564423 | Clytia hemisphaerica | exon |
| TCONS_00050166-exon-scaffold_167-1575043694:563411..564423 | TCONS_00050166-exon-scaffold_167-1575043694:563411..564423 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:563411..564423 . |
Blast
The following BLAST results are available for this feature:
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