TCONS_00050236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050236
Unique NameTCONS_00050236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050236 ID=TCONS_00050236|Name=TCONS_00050236|organism=Clytia hemisphaerica|type=transcript|length=1517bp
TGAAATTATAGGGAAATTATGATCAGAATATCTTTATTGATTAGAATGTC
AATCCATTTCCACAAATGAAGAAGATGAATTCGAAGAAACTTATTTTGAA
CAGTGTGACGACATAAATGACAGTCATGATACCGATGACGAAAAAGAAGA
TCTATCAAAGGCACTGGAGGAAGTAAAAACTATGGTAGGCGAAAGACCAA
AGCGGACTTGGGGAATGAGGGCAGAGAGAAACGATCAAAGATGGAGAGAA
TCAAAAGAAGGTTTGTTAGAAGAGACGATCAGGAGAGAAGAGCAAGAgac
attttgttttaaatgtggTCAAAGAGAGGCTGAAATTCGATGTTATTCGT
GTACTCATGCAATATTTCTTTGTACTGTTTGTGACACTGAAGTGCATAAA
TCCAAATCTTTTCATGATCGCCAATGgtttaaggaattttataaaCCTCT
CACCCCAAAAGAACATATTGAAGATGGTCAAGTTGTCATCATTGAAAAAC
CATTGCTTCTTACAAGTAAATGTTCTTTCTGTGGCCACTTTTGCGAAAGT
TGTGACGTACAAGTCTTGTCAACCGCACCCATTACAGTTATCACAACCAA
AGGACGCTTTGATTTGAACAAATTTGAGCGAATTTGTTGTCATTGTACAG
AGAAATCCAATCCCTTTCAAATACGAACGTTATTAAAGAATGGATATTGG
CCTGTATCGCTGAACTACGCTTTAACAGTCATTCGCGAAGATTGCTTTTT
ACTTTGGGATCGCTTTTCAAAGAACATGCCTGGATCTTCTCTTggaagtt
ttttgaaatctttatctGACATCTCCATACATAATGGCAggacgTACTGC
CAAACCTTATTATGGTGACATTTTTATTGTTAAGAACGAAAAGGTCAATG
ATCATTTGGCAAAGCTGAATTACAGTGTCCGTCAACCGAAAaattctGAA
CCTGTCAATTGCGGAGGCAATATATTAAAAGCTGCTCAGAATGTGTCCAG
GAAAAAGGCGTCTCTGGATGAAACGGGGTTAGAGTATTGTGTGTGTCGAC
ATGGTATTGCACAGAGCGGTGTCAATATGTTTAGGGGAGAAATCTTCGGC
TATGCTCATTACTTGCAAAAAGATCACATGGTGTCTAAAAACGTTAAGTT
TATATGGTATGATGTCATTTGCAAGTACTGGTCATGGTTGAAGTCAAACG
ACCCGTTCTTAGCTGAAGAAATGAAACCTGCCCTGTCAGTCTTACATGGA
AAAATGCACCAGATGTCTTGTCAGATTGGCTTTGGTGGTAGATGGACCAA
GGGTGCTGCATTAACTACAGGAGAAGAAACTGAGCAAGTTAACAGCTACT
TGTCAAGACTCACCAACACAACAAAATACATGCTTCCTCAAAACCGCGAG
GATACTATCACTGAATTTGCCATGGAGTGGAATCAAAGAAAGGTGAAAAG
ATCATCCAAAAGTTTGATGAAAAAGTATACAAAGGTAGAAAAAGAGCTGA
AGAAACTTAAAAGCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_168:7772..11162-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050236 ID=TCONS_00050236|Name=TCONS_00050236|organism=Clytia hemisphaerica|type=transcript|length=3391bp|location=Sequence derived from alignment at scaffold_168:7772..11162- (Clytia hemisphaerica)
TGAAATTATAGGGAAATTATGATCAGAATATCTTTATTGATTAGAATGTC
AATCCATTTCCACAAATGAAGAAGATGAATTCGAAGAAACTTATTTTGAA
CAGTGTGACGACATAAATGACAGTCATGATACCGATGACGAAAAAGAAGG
TAAGCGCTGTTATGCCAAATTTGTATTTTAAAACAACTAGCAGAATTATG
AGTAAATGAACTAAAAATAACTTTGTTGCAGATCTATCAAAGGCACTGGA
GGAAGTAAAAACTATGGTAGGCGAAAGACCAAAGCGGACTTGGGGAATGA
GGGCAGAGAGAAACGATCAAAGATGGAGAGAATCAAAAGAAGGTTTGTTA
GAAGAGACGATCAGGAGAGAAGAGCAAGAGACATTTTGTTTTAAATGTGG
TCAAAGAGAGGCTGAAATTCGATGTTATTCGTGTACTCATGCAATATTTC
TTTGTACTGTTTGTGACACTGAAGTGCATAAATCCAAATCTTTTCATGAT
CGCCAATGGTTTAAGGAATTTTATAAACCTCTCACCCCAAAAGAACATAT
TGAAGATGGTCAAGTTGTCATCATTGGTAAGAAAGATTTAACAGTTATAA
GTTATCATAACCAATCTTTTTCCATTTTTAAAGAATTTAGGTTTTTTATT
AGTGACTCAACTTAAGTTTTTAGCTGTTTGTGTTGGGGCCGTAGTTAGAG
TAAAATTTATTCTATGAAAGAATATTTTGGTATTATTTTACTATTTTATT
ATGTTTGGATATTTAGAAAAACCATTGCTTCTTACAAGTAAATGTTCTTT
CTGTGGCCACTTTTGCGAAAGTTGTGACGTACAAGTCTTGTCAACCGCAC
CCATTACAGTTATCACAACCAAAGGTAGCTATATTTTTCAGTAGGAGTTG
TTAAGAAATTAAAACCCTGATGAACATATTGTGTCCTTTTACTTTCCGTT
ATTTATATGTTAAATGCGGTTGTATGGAATATTCCATTAAGTTGTTATGA
CCGACCATTCTTATCTCTCTTTGTAGGACGCTTTGATTTGAACAAATTTG
AGCGAATTTGTTGTCATTGTACAGAGAAATCCAATCCCTTTCAAATACGA
ACGTTATTAAAGAATGGATATTGGCCTGTATCGCTGAACTACGCTTTAAC
AGTCATTCGCGAAGATTGCTTTTTACTTTGGGATCGCTTTTCAAAGAACA
TGCCTGGATCTTCTCTTGGAAGTTTTTTGAAATCTTTATCTGACATCTCC
ATACATAATGGCAGGGTTTGTTTTTCTTATATAATTTTTATTTATTTAGT
TTAACTTTTGGATCAAGAGTTGAACTTTAATTGTTGAAGTCATAACGTTA
GCCACCCCTAGTATATATGTATATAAATTTTTAAGGTGAGGGTGGGGGCT
GGCTATTTTTTTCTGTAGCATTTAGAAATTTTCCATTGTTGTTTCACACT
GCTCCATATTGTTTACTTTCATATCAGAATTACTAAATATTTGGAGGCTA
ATAAAAAACCTCAGATATTTGGGGGGGGGGCCTGAATCTTTTTTAGGGGA
CCTGATTTTTTTGCCTGGGGCCTAAACCCTATGGAAGTTCAATAAAGCTT
CAGTTTGACTCATTTGTATTTTAATAGTTCCGGGATTTTCCTATTAGGTT
GGAACAATAAACCAACCGATGTTTGCTCACGCTTTCAAAGAGTACCAACA
TTTGAAATTTGATGTCGAACAGTTGTGTTCACTGTCTTGGTTTGAATGTC
CTGGCTGTGGTGATCAGCAGCATTCTTGCCACGTGGATGGAAATAATAAA
TTGTATCGATACAAAACGTCTGGAAAGTCAGTATTAATTTCTTTTAAAGG
TCGATCTTTAAAAAATTTTAAAGAATAATATCTCAGACAGCTGTCTTGTC
TTTGTTTATGTTTATCTTATGATTGTCTTTTTAGTTATATCTAGTTATTA
TGTGAATAATCTATATTCGATTTTCTGATTAAAGATAGTGGCAAATCTAT
GCAATAACTATATTTTTCTTATTTTCATTTTTTAGACGTACTGCCAAACC
TTATTATGGTGACATTTTTATTGTTAAGAACGAAAAGGTCAATGATCATT
TGGCAAAGCTGAATTACAGTGTCCGTCAACCGAAAGTATGTATCATTTTC
TTTTATTCTCTACGTATTAGTTTACTTGTTGAGAAGATATGAAACCTTTT
TCTGTTTTGAAAGAAAAATGTTTATTGCTTGTTCTTTTTCAACAATACAA
TCAAAAATGAATTAGCAACAATTGCGAAATAATAAATCATAAGAAAAATA
TTCCTTGGATGCTGTTTGTATTTAATTTTTAGAATTCTGAACCTGTCAAT
TGCGGAGGCAATATATTAAAAGCTGCTCAGAATGTGTCCAGGAAAAAGGC
GTCTCTGGATGAAACGGGGTTAGAGTATTGTGTGTGTCGACATGGTATTG
CACAGAGCGGTGTCAATATGTTTAGGGGAGAAATCTTCGGCTATGCTCAT
TACTTGCAAAAAGATCACATGGTGTCTAAAAACGTTAAGTTTATATGGTA
TGATGTCATTTGCAAGTACTGGTCATGGTTGAAGTCAAACGACCCGTTCT
TAGCTGAAGAAATGAAACCTGCCCTGTCAGTCTTACATGGAAAAATGCAC
CAGATGTCTTGTCAGGTTGTCTTAAATTTTTACGTCTAATGTTCCTTTTT
ACATTTAACACTCACTGATTCTTTTTCTTCTTAACATTTTTCGCACTTTT
CAAAGCTTTTAATGTAACATCAATGATAACAGAATTTNGTCTTGTCAGGT
TGTCTTAAATTTTTACGTCTAATGTTCCTTTTTACATTTAACACTGATTC
GTTTTCTTCTTAACATTTTTCGCACTTTTCAAAGCTTTTAATGTAACATC
GATGATAACAGAATTCGTAACTTTTAAAATGTGGTGTTAACGGTTTTTTC
ATGTATCTCGATAGATTGGCTTTGGTGGTAGATGGACCAAGGGTGCTGCA
TTAACTACAGGAGAAGAAACTGAGCAAGTTAACAGCTACTTGTCAAGACT
CACCAACACAACAAAATACATGCTTCCTCAAAGTAAATTTCATAGACTAA
AATTGGTACATTGATTGGTATACAAATTTATAACAGATTATAAAAGTGAA
TAAATGCATTTGAAATCTCTTTACCATAGACCGCGAGGATACTATCACTG
AATTTGCCATGGAGTGGAATCAAAGAAAGGTGAAAAGATCATCCAAAAGT
TTGATGAAAAAGTATACAAAGGTAATTTAGTTTGAAGGATTGATTCTCTG
TGGAAGGTTTCTCATTTCTTCTTTTTCTTTTGCCACTTTTCTGTATAAAA
TTTTACAGGTAGAAAAAGAGCTGAAGAAACTTAAAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031823XLOC_031823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050236-exon-scaffold_168-1575043694:11014..11162TCONS_00050236-exon-scaffold_168-1575043694:11014..11162Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:10587..10931TCONS_00050236-exon-scaffold_168-1575043694:10587..10931Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:10289..10396TCONS_00050236-exon-scaffold_168-1575043694:10289..10396Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:9898..10136TCONS_00050236-exon-scaffold_168-1575043694:9898..10136Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:9028..9127TCONS_00050236-exon-scaffold_168-1575043694:9028..9127Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:8498..8830TCONS_00050236-exon-scaffold_168-1575043694:8498..8830Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:8081..8198TCONS_00050236-exon-scaffold_168-1575043694:8081..8198Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:7892..7983TCONS_00050236-exon-scaffold_168-1575043694:7892..7983Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1575043694:7772..7804TCONS_00050236-exon-scaffold_168-1575043694:7772..7804Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:11014..11162TCONS_00050236-exon-scaffold_168-1510915933:11014..11162Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:10587..10931TCONS_00050236-exon-scaffold_168-1510915933:10587..10931Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:10289..10396TCONS_00050236-exon-scaffold_168-1510915933:10289..10396Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:9898..10136TCONS_00050236-exon-scaffold_168-1510915933:9898..10136Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:9028..9127TCONS_00050236-exon-scaffold_168-1510915933:9028..9127Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:8498..8830TCONS_00050236-exon-scaffold_168-1510915933:8498..8830Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:8081..8198TCONS_00050236-exon-scaffold_168-1510915933:8081..8198Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:7892..7983TCONS_00050236-exon-scaffold_168-1510915933:7892..7983Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1510915933:7772..7804TCONS_00050236-exon-scaffold_168-1510915933:7772..7804Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:11014..11162TCONS_00050236-exon-scaffold_168-1491911889:11014..11162Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:10587..10931TCONS_00050236-exon-scaffold_168-1491911889:10587..10931Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:10289..10396TCONS_00050236-exon-scaffold_168-1491911889:10289..10396Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:9898..10136TCONS_00050236-exon-scaffold_168-1491911889:9898..10136Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:9028..9127TCONS_00050236-exon-scaffold_168-1491911889:9028..9127Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:8498..8830TCONS_00050236-exon-scaffold_168-1491911889:8498..8830Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:8081..8198TCONS_00050236-exon-scaffold_168-1491911889:8081..8198Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:7892..7983TCONS_00050236-exon-scaffold_168-1491911889:7892..7983Clytia hemisphaericaexon
TCONS_00050236-exon-scaffold_168-1491911889:7772..7804TCONS_00050236-exon-scaffold_168-1491911889:7772..7804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:7772..11162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.336716	0	0	0	0	0.530994	0	0.56456	0.996418	8.64994e-05	0.973289	0	0	0	0.356891	0.808701	0.637659	0.000245655	0.2988	1.1329e-09	0	0	0.164794	0	0	3.68629e-05	0	1.01069	0.0292795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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