TCONS_00050239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050239
Unique NameTCONS_00050239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050239 ID=TCONS_00050239|Name=TCONS_00050239|organism=Clytia hemisphaerica|type=transcript|length=882bp
ggcaaatttggaacttacctccatacgtctccatacaaaacactgttccc
acgagatctgtgttcttttcgctccaattttgccaattttgccaaattta
ttCGTGGAAAATAAAATGTGACGTTTGCATAATTAAGACATACAAATTAA
TTATTTTCGTACGAAATTGAACATAGTTGGCCTgaacacaaaaataaaat
tacgCACAAATACAAGGGACTTTTTTTTATCGTGTTAAGGCCAACCCAGG
CTACATGTAAACAAAGttgaaaccaaaacaaaaaattcgaaagatttttt
ttggttttttgactGTTGACCTGTTGACTGTTCACTGTTCACTTCTGCAT
CTTCACAAAATGAACTCAGGAAAGCCAAGAAAACCTACAGGTCAATACGA
CTATGGAGATGATTCCAGTCAAGATACACAAAGCTACGAAACCATTGATG
AAATGGAATTGAACAGGTTGGGGATGGGTATCTACCCTGAGGAGTTTGTT
GATGATGATGGGTACAGTGATGAAGGAAGTAGTGATTTGAGCCAACCTAT
GACCAGCCAGCCTTCAAGCCAAATCAAAAAACACAGCCTGAAAATGGTGA
TTAAGGCTCCACCTTCAGACCCGAatggaaaacaaagaaaacgcaAGAAG
AAAAGCAAgcaacaaacaaaagaaaatgacgAGCCGCCAGCTAAACTAAA
TAAAAAGGTGGAAAAGGAACTAAAGGAACCCTATTACTTTTCGGATGCTG
CTACCACTTCCCTTTTGGAGGCATACAAAAACTGCACCCCATTGATGTCT
TCTggaaaatacagaaaaaaacaGaTTTGGCAGAAGATTGCTCAAGACTT
GAGGTGCAAACTTGTTAACGCTGGTGCCACCG
Run BLAST on NCBI

transcript from alignment at scaffold_168:30562..32523-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050239 ID=TCONS_00050239|Name=TCONS_00050239|organism=Clytia hemisphaerica|type=transcript|length=1962bp|location=Sequence derived from alignment at scaffold_168:30562..32523- (Clytia hemisphaerica)
GGCAAATTTGGAACTTACCTCCATACGTCTCCATACAAAACACTGTTCCC
ACGAGATCTGTGTTCTTTTCGCTCCAATTTTGCCAATTTTGCCAAATTTA
TTCGTGGAAAATAAAATGTGACGTTTGCATAATTAAGACATACAAATTAA
TTATTTTCGTACGAAATTGAACATAGTTGGCCTGAACACAAAAATAAAAT
TACGCACAAATACAAGGGACTTTTTTTTATCGTGTTAAGGCCAACCCAGG
CTACATGTAAACAAAGTTGAAACCAAAACAAAAAATTCGAAAGATTTTTT
TTGGTTTTTTGACTGTTGACCTGTTGACTGTTCACTGTTCACTTCTGCAT
CTTCACAAAATGAACTCAGGAAAGCCAAGAAAACCTACAGGTCAATACGA
CTATGGAGATGATTCCAGTCAAGATACACAAAGCTACGAAACCATTGATG
AAATGGAATTGAACAGGTTGGGGATGGGTATCTACCCTGAGGAGTTTGTT
GATGATGATGGGTACAGTGATGAAGGAAGTAGTGATTTGAGCCAACCTAT
GACCAGCCAGCCTTCAAGCCAAATCAAAAAACACAGCCTGAAAATGGTGA
TTAAGGCTCCACCTTCAGACCCGAATGGAAAACAAAGAAAACGCAAGAAG
AAAAGCAAGCAACAAACAAAAGAAAATGACGAGCCGCCAGCTAAACTAAA
TAAAAAGGTGGAAAAGGAACTAAAGGAACCCTATTACTTTTCGGATGCTG
CTACCACTTCCCTTTTGGAGGCATACAAAAACTGCACCCCATTGATGTCT
TCTGGAAAATACAGAAAAAAACAGGTAACTGCTCTTTTTTTTTCATAGCT
ATTATTATATATAGATCAGTGGCATAGTTCTGATCGATCTTCAACTTCTT
GGCAAAAGGCTTTAGTGATGCGAAAATTCAAATCCTTCTAAAATTTGATA
AATCCTCTTTTTAAATTCCAAAAATCTGCTTACTGTATGTTTATTTTTTG
CATTGAAAGTTTGATTCATTCAGTTTTTTTCTGATTATGGATTTTATTAT
TTTTCTTCAGATTTGGCAGAAGATTGCTCAAGACTTGAGGTGCAAACTTG
TTAACGCTGGTGCCACCGCCTTTCCATCAAGTGACCAGTGCATGCAGCGT
CATCGAACCGTCATCAAAGCCTTCAAACAAACGAAGAACTTGAATCGTGA
AAGTGGTCAAGGCAGGGCTACTTGCAAATTCCAAGACGAACTCAACGACC
TTGAAGGTCACAAACCTGACGTAGTACCAGATTACACCATGGCCTCTACA
GGTGAGGTTACACGTAGAAATTCAAACAAGGATGACCAAGAGGTCCCATC
TACATCAGCTAGCACTGCACAACAATCAACCCCACCACCAAAAGTAAAGT
CAAAGCCCAAACCGAAAGAAGGAAGAAGGAGAAATGAAATGGTAATTTTC
ATGGAAAGATATGAGGAGAGGAAGGCAAAGCGAGATGAGGCATTAATGAA
GAGAAAAGAAACATTACATGCAGCAAGTATGGCAATGATGGATAAATTAA
TTGACAAGTTATAACTTTTTTTGAGTAGCATTATTTAACCGTCAANCTAC
CACTTCCCTTTTGGAGGCATACAAAAACTGCACCCCATTGATGTCTTCTG
GAAAATACAGAAAAAAACAGGTAACTGCTCTTTTTTTTCATAGCTATTAT
ATATTATATATAGTGGTATAGTTCTGATCGATCTTCAACTTCTTGGCAAA
AGGCTTTAGTGATGCGAAAATAAAAATCCTTCTAAAATTTGATAAATCCT
CTTTTTAAATTCCAAAAATCTGCTTACTGTATGTTTATTTTTTGCATTGA
AAGTTTGATTTATTCAGTTTTTTTCTGATTATGGATTTTATTATTTTTCT
TCAGATTTGGCAGAAGATTGCTCAAGACTTGAGGTGCAAACTTGTTAACG
CTGGTGCCACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031825XLOC_031825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050239-exon-scaffold_168-1575043694:31700..32523TCONS_00050239-exon-scaffold_168-1575043694:31700..32523Clytia hemisphaericaexon
TCONS_00050239-exon-scaffold_168-1575043694:30562..30619TCONS_00050239-exon-scaffold_168-1575043694:30562..30619Clytia hemisphaericaexon
TCONS_00050239-exon-scaffold_168-1510915933:31700..32523TCONS_00050239-exon-scaffold_168-1510915933:31700..32523Clytia hemisphaericaexon
TCONS_00050239-exon-scaffold_168-1510915933:30562..30619TCONS_00050239-exon-scaffold_168-1510915933:30562..30619Clytia hemisphaericaexon
TCONS_00050239-exon-scaffold_168-1491911889:31700..32523TCONS_00050239-exon-scaffold_168-1491911889:31700..32523Clytia hemisphaericaexon
TCONS_00050239-exon-scaffold_168-1491911889:30562..30619TCONS_00050239-exon-scaffold_168-1491911889:30562..30619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:30562..32523 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224347	0.0827756	0	0.271517	0.0859241	0.151541	0.708469	0	0	0	0	0	0	0	0	0	0	0.000345546	0	0	0.467933	0.694535	0	0.502567	0.705743	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top