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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050329 ID=TCONS_00050329|Name=TCONS_00050329|organism=Clytia hemisphaerica|type=transcript|length=1468bp
cttaaaaaacctTATAATGTTGGAacatttgaccaaattttatgttttat
ataagaattcATATACATATATCTGCAGACACATGTCtcgtccttcccag
gactcatcAGTGCTGCTCAAgtaagcgagcatagactgctgttgtcacca
gagtgctGAAACACCATGAGTGTTGAGCTTtgcataatcgcttgtggtaa
gCGGAGAAGCAACGCTTTAAATCAGATGCCCTCATCAAGGGGTTGTAAAC
ATGATTTTTTGTCTTCTCCCCTGAGCAAAACTACctctataatatttttt
taatactttATAATGCAAAATAATAGATATAAATGAATGAGCAGGAAAGT
ACACTATGGCTGGTTATGATCATTCGAAAGGAATTGGAATTAAAGAAATC
ACTGTTGTTGAAGTCAGGAATCCAATTGTTCAACATGAAGGTTCATTGAA
ACAATTCACAGACTATGAAGTCTGTATAAAAACAACAAGTAAAGCTTTTA
TCATTCCCCAATCCTCAGTAAGAAGGAGATATTCAGATTTTGTTTGGTTG
AAAAAATGGCTGGAAAAACAAAATGATGCTTTTTCAAGAGTGAGAACACC
TAAAATGCCGCCAAAGAAACTTATGGGTAAGACTGATCCAGATTTTATTC
AAGCCAGAATGCGTGGTTTACAGAAATTCTTGAGAAAGATTATTGAGCAC
AATGTCTTTCTTTCAGACAAGGCTCTTCATCTTTTCTTACAAAGTACCAT
GAAAGTGAAACAAATTGAATGCTATTTGGTTGGGAATTCAACAAAAGAGT
TTGTCGATAACAGTGATGCTCTTGTATCTCATTTTGAAGCTGAAAAGAAG
CAGACTACTCAATCTGTGCTTCATAGTATCAGCGAGAGTTTACCAATTGA
GCAAAACGATGATAACCAGAGTGAAAGCTCTAGATCTAGAGCAGCAAGCT
CCTATGGAAAAAGCCCTTCCTACAGTGCAAGCTCAATCAGTACTAACTCT
TTGTTGGACTCATTTGAAGCAATAAGTGTTTCTGATTGTGAAGCCAATGA
CCGTGAGGAATTGACGTCAGTTGCTGTTATAGAgcatttgaaaataaaac
aacttGTGCGTGAAAGTGAGAATAAAGAGGAAAGTGATGCAGATAGTTTG
AAAGGAATGCAGGAGgatgaaaagaattttgacCTTTTGGATGATGAACC
GGTGAAGGATAAAAACAATGGTTCTCAGAATAGTCTGGCTGAATGTGATA
GACAGGACAAATAACATAACAAAATGttactttaattttttattttgata
taaaacatatttttctaaaatatagATAAACTACTCTTTCAATCATAGGG
TTTGGGTGGAAAGGCTCTTAAGGCCATGTTAGACACAACATTTTTTGCCA
ACATTTTAgagaattttctaaaaattggtaTAATTTTACCATATTTGAGC
GTGTAAACATGTCTTCAC Run BLAST on NCBI transcript from alignment at scaffold_169:458902..460369+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050329 ID=TCONS_00050329|Name=TCONS_00050329|organism=Clytia hemisphaerica|type=transcript|length=1468bp|location=Sequence derived from alignment at scaffold_169:458902..460369+ (Clytia hemisphaerica)
cttaaaaaacctTATAATGTTGGAacatttgaccaaattttatgttttat
ataagaattcATATACATATATCTGCAGACACATGTCtcgtccttcccag
gactcatcAGTGCTGCTCAAgtaagcgagcatagactgctgttgtcacca
gagtgctGAAACACCATGAGTGTTGAGCTTtgcataatcgcttgtggtaa
gCGGAGAAGCAACGCTTTAAATCAGATGCCCTCATCAAGGGGTTGTAAAC
ATGATTTTTTGTCTTCTCCCCTGAGCAAAACTACctctataatatttttt
taatactttATAATGCAAAATAATAGATATAAATGAATGAGCAGGAAAGT
ACACTATGGCTGGTTATGATCATTCGAAAGGAATTGGAATTAAAGAAATC
ACTGTTGTTGAAGTCAGGAATCCAATTGTTCAACATGAAGGTTCATTGAA
ACAATTCACAGACTATGAAGTCTGTATAAAAACAACAAGTAAAGCTTTTA
TCATTCCCCAATCCTCAGTAAGAAGGAGATATTCAGATTTTGTTTGGTTG
AAAAAATGGCTGGAAAAACAAAATGATGCTTTTTCAAGAGTGAGAACACC
TAAAATGCCGCCAAAGAAACTTATGGGTAAGACTGATCCAGATTTTATTC
AAGCCAGAATGCGTGGTTTACAGAAATTCTTGAGAAAGATTATTGAGCAC
AATGTCTTTCTTTCAGACAAGGCTCTTCATCTTTTCTTACAAAGTACCAT
GAAAGTGAAACAAATTGAATGCTATTTGGTTGGGAATTCAACAAAAGAGT
TTGTCGATAACAGTGATGCTCTTGTATCTCATTTTGAAGCTGAAAAGAAG
CAGACTACTCAATCTGTGCTTCATAGTATCAGCGAGAGTTTACCAATTGA
GCAAAACGATGATAACCAGAGTGAAAGCTCTAGATCTAGAGCAGCAAGCT
CCTATGGAAAAAGCCCTTCCTACAGTGCAAGCTCAATCAGTACTAACTCT
TTGTTGGACTCATTTGAAGCAATAAGTGTTTCTGATTGTGAAGCCAATGA
CCGTGAGGAATTGACGTCAGTTGCTGTTATAGAgcatttgaaaataaaac
aacttGTGCGTGAAAGTGAGAATAAAGAGGAAAGTGATGCAGATAGTTTG
AAAGGAATGCAGGAGgatgaaaagaattttgacCTTTTGGATGATGAACC
GGTGAAGGATAAAAACAATGGTTCTCAGAATAGTCTGGCTGAATGTGATA
GACAGGACAAATAACATAACAAAATGttactttaattttttattttgata
taaaacatatttttctaaaatatagATAAACTACTCTTTCAATCATAGGG
TTTGGGTGGAAAGGCTCTTAAGGCCATGTTAGACACAACATTTTTTGCCA
ACATTTTAgagaattttctaaaaattggtaTAATTTTACCATATTTGAGC
GTGTAAACATGTCTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050329-exon-scaffold_169-1491911889:458902..460369 | TCONS_00050329-exon-scaffold_169-1491911889:458902..460369 | Clytia hemisphaerica | exon |
| TCONS_00050329-exon-scaffold_169-1510915933:458902..460369 | TCONS_00050329-exon-scaffold_169-1510915933:458902..460369 | Clytia hemisphaerica | exon |
| TCONS_00050329-exon-scaffold_169-1575043694:458902..460369 | TCONS_00050329-exon-scaffold_169-1575043694:458902..460369 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_169 | supercontig | scaffold_169:458902..460369 + |
Blast
BLAST of TCONS_00050329 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 6.642e-29 Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 2
Query: 392 KEITVVEVRNPIVQHEGSLKQFTDYEVCIKTTSKAFIIPQSSVRRRYSDFVWLKKWLEKQNDAFSRVRTPKMPPKKLMGKTDPDFIQARMRGLQKFLRKIIEHNVFLSDKALHLFLQSTMKVKQIECYLVGNSTKEFVDNSDALVSH 832
+E+ V V++P VQ+EGS + DY++ + T SKAF S VRRRY +FVWL+K L++ V P++P K T +FI+ R +GLQ FL K+++ V LSD LHLFLQS + V +IE + G ST + SDA++ +
Sbjct: 14 EEVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGL---VPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEACVQGRST---MTVSDAILRY 154
The following BLAST results are available for this feature:
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