TCONS_00050427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050427
Unique NameTCONS_00050427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2005

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050427 ID=TCONS_00050427|Name=TCONS_00050427|organism=Clytia hemisphaerica|type=transcript|length=2005bp
CTTCATTTTACATTTTTGTTCATCCCTTATGATGTTTACCGGATGTCTTG
TTTACGTCATCCTTTTCTTCCAACCCGCCACTTACGGACGTTACTCCAAT
GCAACCGGAAACTTGCTCTTCTGTGCAATCCCAGCTAGAACTGCCTGGTT
TTTGCAAGAAGTTCCGGCGTTCATGGTATCCGTTGTTTTAGTGTTTCTGG
TCTTTTTGGAATGGCTTCCCGGAGGTTATACGAGAACGCAATTGTTCGTC
TTGAGTTGGTTTATCTGTCATTATTTTCAAAGATCATTCATCTACTCGTT
ATCAATCACTGGCGGTAAACCTACGCCCTTCTACGCCTTCTTTTTGGCGT
TTGTTTTCTGTACAGGAAATGGTTACATGCAAGCGCGTGGTGCCCTGTTG
CTTAGCAACTATCCTGATGACTTGTTAACCAAACTACGTGTGACCCTGGG
CTTAGTTTTGTTTTGTCTTGGAATATATTCAAACATGAAGTGTGACCACA
TGTTGAGGAACTTAAGGAAACCCGGAGAAACGGGCTACAAGATACCTAGA
GGGTTTTTGTTCGATTACGTTTCATGTGGGAACTTCTTTGGTGAGATAAT
CGAATGGATTGGATTCGCCATCGCTTCATGGTCCACAGTCGGTGCAGCGT
TTGCTTTCTTCACCATTGCTAATCTCGTCCCCAGGGCTGTCACACATCAT
AGGTTTTATCATCAGAAATTTGACGACTATCCAAAGAGTAGAAAGGCTGT
CATCCCTTTCCTGTTGTGAACTGTGTCATCCCTTTCCTGTTGTGAACTGT
GTTGACAGATTTGTTGTATTTGGTAACGTACAATTTGTCAAATTCTTCCT
TGTGATGATTCAAATCAATAGACCATTCCAATGTGGGTTATAATAAATCT
AGATAGATTTTTTACTTAAATTTTCATGTCATTTTAGAATCAAAAAGGTA
GTCTTCAGTAGTGAACTTTCGTTAATTCGATGTCGAGCGGGAAGTCTGTT
TTGTTCGATTTAAAAATTGCGAATAATAGAAAGCATTTTAAGTGGATTTT
CCTTTGACGGCaactgagaattagttcgaattatagaaagattcgaataa
tagacgCTCGAATTAGCGAAAGTCCACTGTATTACATATAAATACCATAA
TAACGGCCACGGCAATCTATAAATTCTCGACATTTAAGGTGTGCCCGAGG
GAAAAAAGcatttcatgatatgcaccattgcaatgtcttctgacattaca
tcaccacggacccaatagctgattggttgtaagtgacgtaaaatcagtca
atacgtcacttacaaccaatcagttgCTGGGTCCCTGgtagacattgcaa
tggtgcatatcatgaatgcAGCTCTGTTGATGAAGACCGATGTGAAATTC
ACCTGACATAATATATTGTGCGTcacattttcagaaaatttctaaatcat
CACCCTTTGCTGAGAACTCTtatgtaaaataaaaacatcgATCGGTTAGA
ATGATTTTGCTCACTTTTGTTTAAATTGAGGtttaagaccatgttcgcat
gttactgttccgtttcgctccggtatgattttcgttacggatcgaatGTG
Tttatattggtttcggaacgtttcggagcaagaagaaggagcagttccgt
tccgattaAAAAAGTGGAgcaaaaccgtttcgatctgttttgctttgtaa
cgtcttcttttttgacgttttgaattttgacgttcgcacttgtttcggaa
ccgtttcggaacggaacggaacggaaccgtaacgtctgaacatggtatAA
ATATATGGTATTGGTGGCTCAAAATGGTTCAATAGGTCAAAGCTTCAAAT
TGACATCCTTCAGAATATAGAACAATAACTATTTTAAATTAATTagtata
attttttaattttcagatatATATGCAATCATGAacgtataaacgactgg
acatccatctcctttgtctttttgaagataacacagctagcttcgttgcc
acctc
Run BLAST on NCBI

protein sequence of TCONS_00050427-protein

>TCONS_00050427-protein ID=TCONS_00050427-protein|Name=TCONS_00050427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
FILHFCSSLMMFTGCLVYVILFFQPATYGRYSNATGNLLFCAIPARTAWF
LQEVPAFMVSVVLVFLVFLEWLPGGYTRTQLFVLSWFICHYFQRSFIYSL
SITGGKPTPFYAFFLAFVFCTGNGYMQARGALLLSNYPDDLLTKLRVTLG
LVLFCLGIYSNMKCDHMLRNLRKPGETGYKIPRGFLFDYVSCGNFFGEII
EWIGFAIASWSTVGAAFAFFTIANLVPRAVTHHRFYHQKFDDYPKSRKAV
IPFLL
Run BLAST on NCBI

transcript from alignment at scaffold_171:37936..41388-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050427 ID=TCONS_00050427|Name=TCONS_00050427|organism=Clytia hemisphaerica|type=transcript|length=3453bp|location=Sequence derived from alignment at scaffold_171:37936..41388- (Clytia hemisphaerica)
CTTCATTTTACATTTTTGTTCATCCCTTATGATGTTTACCGGATGTCTTG
TTTACGTCATCCTTTTCTTCCAACCCGCCACTTACGGACGTTACTCCAAT
GCAACCGGAAACTTGCTCTTCTGTGCAATCCCAGCTAGAACTGCCTGGTT
TTTGCAAGAAGTTCCGGCGTTCATGGTATCCGTTGTTTTAGTGTTTCTGG
TCTTTTTGGAATGGCTTCCCGGAGGTTATACGAGAACGCAATTGTTCGTC
TTGAGTTGGTTTATCTGTCATTATTTTCAAAGGTGAGTAGTCAAGGATAT
ACACTCCTGCAATATATCCTGTATATATTTTTTATTACAGATGATTGGTT
GTAAGTGACGTATGCCTCCGCCATCCATCAAGTTCTAGGGGACATTATAG
TCGTTTTTCTTGCGGGATAGGTTGAGGGTGTATTCTTGTAAATTATTTTT
CATGTATTGTACTTGAGTCCACTTGAGTATTTCTTGCTTGCCTGTTTATT
CCGTCTTATGACTTTTGACAAACTGGCAGTCTATTTAAAGTTCAATAGCG
AGTTGTACTTGTGTTTTTTTTTGTGACGGTAACTGAGGACGACGGTAAAT
CAGCAAATTTCACTTTTCAGTCACTCATCATTATCACATTTTCGTTCTCT
TTTTTTTGCAGATCATTCATCTACTCGTTATCAATCACTGGCGGTAAACC
TACGCCCTTCTACGCCTTCTTTTTGGCGTTTGTTTTCTGTACAGGAAATG
GTTACATGCAAGCGCGTGGTGCCCTGTTGCTTAGCAACTATCCTGATGAC
TTGTTAACCAAACTACGTGTGACCCTGGGCTTAGTTTTGTTTTGTCTTGG
AATATATTCAAACATGAAGTGTGACCACATGTTGAGGAACTTAAGGAAAC
CCGGAGAAACGGGCTACAAGATACCTAGAGGTTAGTTATCCGTAGGAACT
ATGTTTTCCAAGAATTCTTTTTTCCTACGAAACTTGGTTGAGTGGTCTGT
TTTTTTCCTTTGTCAAAACGAATTTACTTATCCAGAGAATGCGTGTTTAC
ATCATTTTTGTACATTTATCTACTTTTTGTTCGATAACGTGACATGTTCA
GAAAACATAAAATGTAATTATCGTTATAAGTTATACTCCATTTGGAAACG
AGACCCCTTAATTTATTTCTTCTTACACAGGGTTTTTGTTCGATTACGTT
TCATGTGGGAACTTCTTTGGTGAGATAATCGAATGGATTGGATTCGCCAT
CGCTTCATGGTCCACAGTCGGTGCAGCGTTTGCTTTCTTCACCATTGCTA
ATCTCGTCCCCAGGGCTGTCACACATCATAGGTATGTTCATTGATCTTTG
TTCAGGGATTTTCTTTAAACGGCGCTACATCAAAACAAGTATTACTAAGG
GATTTAAGTAGAAGTAGATCTAGCGCTCTCGATGCATTTACACTGCTTTT
GAGATAAATGATAACCTTGAATATACTTAGATCACGATGAGACACTTACC
CTTATCATTAACTTTTGATGATTCCCCGTGACAAACTTTGACCAACACCA
AGGGTGGAGTGAAGGTACTTAATCCATATTGTTGGATCTTTCACTCAACA
TAAGCATCGCTTTACAGTGGAACTTAATATACACACTTTTTTCATAAGAA
CAATTTTATAAGAACACGAGACTGAAAAACTGGCCAAAACCTAAGAACAA
ATTAAGAACAATTTGAACAGATTTTTAATCCATTTTAAGTTTTTCAGTAA
AGAAACCATGTTTATTTAAAAAGAATATCGTATCGTAAGAACATTTAAGC
CTGAACATTTCAAAAGATTAAGAACAGCCCAGTCTGAGCCAAGTGTGTAC
TGATAGAGTTGATAAAATAACCTCCCAACTGAAATCAAAACTACCAAATC
GATATTCCAGTTCAGAAATTCAATTAAAAAGACTAATCAAACCAGGTTGT
TATATTTCTTATCCTGTTCTTTTTTCTAGTTCTTGTTCTTGTTACTTTTA
CCGTTCTTGACCCCTTCCCCCAAAGTGGCCCCTGGGTGAGACAATTTTCA
AACTGCCTAAAAGTTTGAAAATTATTCCACTATAAATATGTTTTTTTATT
AGAGAACAATTAGAACATGTATTAAAACAAAGCTCTCTTCCTTTCTTCAG
GTTTTATCATCAGAAATTTGACGACTATCCAAAGAGTAGAAAGGCTGTCA
TCCCTTTCCTGTTGTGAACTGTGTCATCCCTTTCCTGTTGTGAACTGTGT
TGACAGATTTGTTGTATTTGGTAACGTACAATTTGTCAAATTCTTCCTTG
TGATGATTCAAATCAATAGACCATTCCAATGTGGGTTATAATAAATCTAG
ATAGATTTTTTACTTAAATTTTCATGTCATTTTAGAATCAAAAAGGTAGT
CTTCAGTAGTGAACTTTCGTTAATTCGATGTCGAGCGGGAAGTCTGTTTT
GTTCGATTTAAAAATTGCGAATAATAGAAAGCATTTTAAGTGGATTTTCC
TTTGACGGCAACTGAGAATTAGTTCGAATTATAGAAAGATTCGAATAATA
GACGCTCGAATTAGCGAAAGTCCACTGTATTACATATAAATACCATAATA
ACGGCCACGGCAATCTATAAATTCTCGACATTTAAGGTGTGCCCGAGGGA
AAAAAGCATTTCATGATATGCACCATTGCAATGTCTTCTGACATTACATC
ACCACGGACCCAATAGCTGATTGGTTGTAAGTGACGTAAAATCAGTCAAT
ACGTCACTTACAACCAATCAGTTGCTGGGTCCCTGGTAGACATTGCAATG
GTGCATATCATGAATGCAGCTCTGTTGATGAAGACCGATGTGAAATTCAC
CTGACATAATATATTGTGCGTCACATTTTCAGAAAATTTCTAAATCATCA
CCCTTTGCTGAGAACTCTTATGTAAAATAAAAACATCGATCGGTTAGAAT
GATTTTGCTCACTTTTGTTTAAATTGAGGTTTAAGACCATGTTCGCATGT
TACTGTTCCGTTTCGCTCCGGTATGATTTTCGTTACGGATCGAATGTGTT
TATATTGGTTTCGGAACGTTTCGGAGCAAGAAGAAGGAGCAGTTCCGTTC
CGATTAAAAAAGTGGAGCAAAACCGTTTCGATCTGTTTTGCTTTGTAACG
TCTTCTTTTTTGACGTTTTGAATTTTGACGTTCGCACTTGTTTCGGAACC
GTTTCGGAACGGAACGGAACGGAACCGTAACGTCTGAACATGGTATAAAT
ATATGGTATTGGTGGCTCAAAATGGTTCAATAGGTCAAAGCTTCAAATTG
ACATCCTTCAGAATATAGAACAATAACTATTTTAAATTAATTAGTATAAT
TTTTTAATTTTCAGATATATATGCAATCATGAACGTATAAACGACTGGAC
ATCCATCTCCTTTGTCTTTTTGAAGATAACACAGCTAGCTTCGTTGCCAC
CTC

Coding sequence (CDS) from alignment at scaffold_171:37936..41388-

>TCONS_00050427 ID=TCONS_00050427|Name=TCONS_00050427|organism=Clytia hemisphaerica|type=CDS|length=3072bp|location=Sequence derived from alignment at scaffold_171:37936..41388- (Clytia hemisphaerica)
GTTTTATCATCAGAAATTTGACGACTATCCAAAGAGTAGAAAGGCTGTCA
TCCCTTTCCTGTTGTGAGGTTTTTGTTCGATTACGTTTCATGTGGGAACT
TCTTTGGTGAGATAATCGAATGGATTGGATTCGCCATCGCTTCATGGTCC
ACAGTCGGTGCAGCGTTTGCTTTCTTCACCATTGCTAATCTCGTCCCCAG
GGCTGTCACACATCATAGATCATTCATCTACTCGTTATCAATCACTGGCG
GTAAACCTACGCCCTTCTACGCCTTCTTTTTGGCGTTTGTTTTCTGTACA
GGAAATGGTTACATGCAAGCGCGTGGTGCCCTGTTGCTTAGCAACTATCC
TGATGACTTGTTAACCAAACTACGTGTGACCCTGGGCTTAGTTTTGTTTT
GTCTTGGAATATATTCAAACATGAAGTGTGACCACATGTTGAGGAACTTA
AGGAAACCCGGAGAAACGGGCTACAAGATACCTAGAGTTCATTTTACATT
TTTGTTCATCCCTTATGATGTTTACCGGATGTCTTGTTTACGTCATCCTT
TTCTTCCAACCCGCCACTTACGGACGTTACTCCAATGCAACCGGAAACTT
GCTCTTCTGTGCAATCCCAGCTAGAACTGCCTGGTTTTTGCAAGAAGTTC
CGGCGTTCATGGTATCCGTTGTTTTAGTGTTTCTGGTCTTTTTGGAATGG
CTTCCCGGAGGTTATACGAGAACGCAATTGTTCGTCTTGAGTTGGTTTAT
CTGTCATTATTTTCAAAGGTTTTATCATCAGAAATTTGACGACTATCCAA
AGAGTAGAAAGGCTGTCATCCCTTTCCTGTTGTGAGGTTTTTGTTCGATT
ACGTTTCATGTGGGAACTTCTTTGGTGAGATAATCGAATGGATTGGATTC
GCCATCGCTTCATGGTCCACAGTCGGTGCAGCGTTTGCTTTCTTCACCAT
TGCTAATCTCGTCCCCAGGGCTGTCACACATCATAGATCATTCATCTACT
CGTTATCAATCACTGGCGGTAAACCTACGCCCTTCTACGCCTTCTTTTTG
GCGTTTGTTTTCTGTACAGGAAATGGTTACATGCAAGCGCGTGGTGCCCT
GTTGCTTAGCAACTATCCTGATGACTTGTTAACCAAACTACGTGTGACCC
TGGGCTTAGTTTTGTTTTGTCTTGGAATATATTCAAACATGAAGTGTGAC
CACATGTTGAGGAACTTAAGGAAACCCGGAGAAACGGGCTACAAGATACC
TAGAGTTCATTTTACATTTTTGTTCATCCCTTATGATGTTTACCGGATGT
CTTGTTTACGTCATCCTTTTCTTCCAACCCGCCACTTACGGACGTTACTC
CAATGCAACCGGAAACTTGCTCTTCTGTGCAATCCCAGCTAGAACTGCCT
GGTTTTTGCAAGAAGTTCCGGCGTTCATGGTATCCGTTGTTTTAGTGTTT
CTGGTCTTTTTGGAATGGCTTCCCGGAGGTTATACGAGAACGCAATTGTT
CGTCTTGAGTTGGTTTATCTGTCATTATTTTCAAAGGTTTTATCATCAGA
AATTTGACGACTATCCAAAGAGTAGAAAGGCTGTCATCCCTTTCCTGTTG
TGAGGTTTTTGTTCGATTACGTTTCATGTGGGAACTTCTTTGGTGAGATA
ATCGAATGGATTGGATTCGCCATCGCTTCATGGTCCACAGTCGGTGCAGC
GTTTGCTTTCTTCACCATTGCTAATCTCGTCCCCAGGGCTGTCACACATC
ATAGATCATTCATCTACTCGTTATCAATCACTGGCGGTAAACCTACGCCC
TTCTACGCCTTCTTTTTGGCGTTTGTTTTCTGTACAGGAAATGGTTACAT
GCAAGCGCGTGGTGCCCTGTTGCTTAGCAACTATCCTGATGACTTGTTAA
CCAAACTACGTGTGACCCTGGGCTTAGTTTTGTTTTGTCTTGGAATATAT
TCAAACATGAAGTGTGACCACATGTTGAGGAACTTAAGGAAACCCGGAGA
AACGGGCTACAAGATACCTAGAGTTCATTTTACATTTTTGTTCATCCCTT
ATGATGTTTACCGGATGTCTTGTTTACGTCATCCTTTTCTTCCAACCCGC
CACTTACGGACGTTACTCCAATGCAACCGGAAACTTGCTCTTCTGTGCAA
TCCCAGCTAGAACTGCCTGGTTTTTGCAAGAAGTTCCGGCGTTCATGGTA
TCCGTTGTTTTAGTGTTTCTGGTCTTTTTGGAATGGCTTCCCGGAGGTTA
TACGAGAACGCAATTGTTCGTCTTGAGTTGGTTTATCTGTCATTATTTTC
AAAGGTTTTATCATCAGAAATTTGACGACTATCCAAAGAGTAGAAAGGCT
GTCATCCCTTTCCTGTTGTGAGGTTTTTGTTCGATTACGTTTCATGTGGG
AACTTCTTTGGTGAGATAATCGAATGGATTGGATTCGCCATCGCTTCATG
GTCCACAGTCGGTGCAGCGTTTGCTTTCTTCACCATTGCTAATCTCGTCC
CCAGGGCTGTCACACATCATAGATCATTCATCTACTCGTTATCAATCACT
GGCGGTAAACCTACGCCCTTCTACGCCTTCTTTTTGGCGTTTGTTTTCTG
TACAGGAAATGGTTACATGCAAGCGCGTGGTGCCCTGTTGCTTAGCAACT
ATCCTGATGACTTGTTAACCAAACTACGTGTGACCCTGGGCTTAGTTTTG
TTTTGTCTTGGAATATATTCAAACATGAAGTGTGACCACATGTTGAGGAA
CTTAAGGAAACCCGGAGAAACGGGCTACAAGATACCTAGAGTTCATTTTA
CATTTTTGTTCATCCCTTATGATGTTTACCGGATGTCTTGTTTACGTCAT
CCTTTTCTTCCAACCCGCCACTTACGGACGTTACTCCAATGCAACCGGAA
ACTTGCTCTTCTGTGCAATCCCAGCTAGAACTGCCTGGTTTTTGCAAGAA
GTTCCGGCGTTCATGGTATCCGTTGTTTTAGTGTTTCTGGTCTTTTTGGA
ATGGCTTCCCGGAGGTTATACGAGAACGCAATTGTTCGTCTTGAGTTGGT
TTATCTGTCATTATTTTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031932XLOC_031932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050427-exon-scaffold_171-1575043694:41107..41388TCONS_00050427-exon-scaffold_171-1575043694:41107..41388Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1575043694:40459..40727TCONS_00050427-exon-scaffold_171-1575043694:40459..40727Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1575043694:40058..40208TCONS_00050427-exon-scaffold_171-1575043694:40058..40208Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1575043694:37936..39238TCONS_00050427-exon-scaffold_171-1575043694:37936..39238Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1510915933:41107..41388TCONS_00050427-exon-scaffold_171-1510915933:41107..41388Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1510915933:40459..40727TCONS_00050427-exon-scaffold_171-1510915933:40459..40727Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1510915933:40058..40208TCONS_00050427-exon-scaffold_171-1510915933:40058..40208Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1510915933:37936..39238TCONS_00050427-exon-scaffold_171-1510915933:37936..39238Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1491911889:41107..41388TCONS_00050427-exon-scaffold_171-1491911889:41107..41388Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1491911889:40459..40727TCONS_00050427-exon-scaffold_171-1491911889:40459..40727Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1491911889:40058..40208TCONS_00050427-exon-scaffold_171-1491911889:40058..40208Clytia hemisphaericaexon
TCONS_00050427-exon-scaffold_171-1491911889:37936..39238TCONS_00050427-exon-scaffold_171-1491911889:37936..39238Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050427-proteinTCONS_00050427-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:37936..41388 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.28364	3.97669	2.50258	3.50209	3.79142	2.68055	3.70405	3.51152	3.59912	3.5989	2.05967	2.56563	2.14551	2.02022	4.25856	5.96443	4.49821	3.70632	1.77835	2.16385	3.26152	3.26954	4.43561	3.22857	2.71027	2.06527	2.09587	1.85044	5.72947	4.68309
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0166363-oxo-5-alpha-steroid_4-DH
IPR0011043-oxo-5_a-steroid_4-DH_C
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:00038653-oxo-5-alpha-steroid 4-dehydrogenase activity
GO:0016627oxidoreductase activity, acting on the CH-CH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008202steroid metabolic process
GO:0006629lipid metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006629 lipid metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008202 steroid metabolic process
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity
molecular_function GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors
Blast
[Close]
BLAST of TCONS_00050427 vs. Swiss-Prot (Human)
Match: S5A2 (3-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Homo sapiens GN=SRD5A2 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.270e-55
Identity = 110/262 (41.98%), Postives = 151/262 (57.63%), Query Frame = 2 
Query:    5 ILHFCSSLMMFTGCLVYVILFFQPATYGRYSNATGNLLFCAIPARTAWFLQEVPAXXXXXXXXXXXXXEWLPGGYTRTQ---------LFVLSWFICHYFQRSFIYSLSITGGKPTPFYAFFLAFVFCTGNGYMQARGALLLSNYPDDLLTKLRVTLGLVLFCLGIYSNMKCDHMLRNLRKPGETGYKIPRGFLFDYVSCGNFFGEIIEWIGFAIASWSTVGAAFAFFTIANLVPRAVTHHRFYHQKFDDYPKSRKAVIPFL 763
            +L   ++L+      +YV    +P+ YG+++ +        +PAR AWFLQE+P+F              +P G    Q           +L  F  HYF R+F+YSL +  G+P P         FCTGNG +Q    +  + YPD   T +R +LG+ LF LG+  N+  D++LR LRKPGE  Y+IP+G LF YVS  NF GEIIEWIG+A+A+WS    AFAFF++  L  RA  HHRFY + F+DYPKSRKA+IPF+
Sbjct:   10 VLAGSATLVALGALALYVA---KPSGYGKHTESLKPAA-TRLPARAAWFLQELPSFA-------------VPAGILARQPLSLFGPPGTVLLGLFCVHYFHRTFVYSL-LNRGRPYPAILILRGTAFCTGNGVLQGYYLIYCAEYPDGWYTDIRFSLGVFLFILGMGINIHSDYILRQLRKPGEISYRIPQGGLFTYVSGANFLGEIIEWIGYALATWSLPALAFAFFSLCFLGLRAFHHHRFYLKMFEDYPKSRKALIPFI 253
The following BLAST results are available for this feature:
BLAST of TCONS_00050427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S5A21.270e-5541.983-oxo-5-alpha-steroid 4-dehydrogenase 2 OS=Homo sa... [more]
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