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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050459 ID=TCONS_00050459|Name=TCONS_00050459|organism=Clytia hemisphaerica|type=transcript|length=3673bp
ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG
GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT
TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT
GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG
AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT
GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT
AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG
TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA
TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC
TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA
ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTCAA
CAGTTTGAAGCATAACGATCCACAATTAAAAACGTTATTGGCGATCGGAG
GTTGGAACTTTGGATCAGAAACGTTCTCAAAATTGGTGTCCGACATTGAT
GACATGATGGTATTCGCCATTCGCTCCGCTGACTACTTGCAGTTGCATGG
TGAGTTTCTCTCACGTTCGCGCGATGATTTCGCGCAGTAGACCACAACGC
TGACGTTTTCAATCGAGGTCTATGTGCATGGGTGGTTAGCCTGGGTTAGC
CACTCTGATGATAATAGTTGAACGGAGTTTCAACATTATGCATCTTGTCG
TCGTGCGTTATTTGGATACAGTCTAAACATCTCGGGTTCACAACTAAGTA
CTTGCCACGTATCTACCAGAGACTTAGTTAACTTCATGAATTGAATACAT
ACAACAGTGTAACTGATAGTTTCTTTTCTTTAGAATTCGACGGACTTGAT
TTGGATTGGGAATACCCCGGACACAGAGGAAGTCCACcagaagataaaca
aagattCACAGAATTCTGCCAAATCCTCAAAGCAGAATATTCATCAAGAG
GACTTCTCCTTACAGCCGCTGTTGCTGCTGGTCCCTCAACCGTCCAAGGG
GCGTATGAAATATTACCAATCTCTAAGGAGTTGGATTTCATCAACTTAAT
GGCTTATGATTTGTATGGAAGCTGGGGACCTTCGACTGGCCACCACACCA
ATATGAATTCAAACAGCCCACTCAATGTAATTAGCTCCGTCGAAATATGG
CTCGCCTCAGGTATGGACCCTGATAAATTAGTCCTGGGACTGGCACCATA
CGGCCGAACTTTTACTCTATCAGACAAATGCAACAATGGCGTTGGAGCAC
CTTTTATTGCACCTGGCACACCAGGACCGTACACAGGTGAAGCTGGCTTC
AAAGCGTATTACGAAATTTGTAACAGCGCCTGGACCAGTAAAGTTTGCAC
TGGGAATAGCGAGGCTCGAGCACCACACGGAGTAGCGAATGGCGTTTGGG
TTGGTTTTGATGATGAAGAAAGCGTCGTGTACAAAGTCAACAATATTGTG
AAAGACATGGGTTTAGGAGGAATCATGTTTTGGGCGCTTGATTTGGATGA
TTTTACTGGATCATGTGGAGGTGAGAAATATCCAATCATAAAGGCAGCAA
ATCGCGCTTTATTGGAAGAAAATGCACCAGTCTTTTCATCATGTCAAGAT
TTTTCCGATTGCGGAGGAATCAAACCTACAACAACATCAACAACGACAAA
GTCTACAGTTCGCCCACCAGTTTCTACCTCCACTACGACGACTTCCCTTC
CTTCAGGAGGTTGCCAAATGCCTCCAGTAAGTGAACGAAAAGAATGCTGG
CTCAACAAAGACGGTCCTTGGGGAAAACAACCATCTATTGAACAATGGTG
TGCCACGAGTTGTAAAACCGACCCGAGTTGCAATAAACAAATGTGTTGCT
GTAAAGGTTCAACGACTCCCACAACAACTACTACAACCACAACGACTATa
ccgacaacaacaacaacttcaCCGCTTATTTCtccaacaacaacgaccac
aaCTCAGTCCACAACGAAATCAACCACCCAAAGCACTACACGAAGCTCCA
CTACCAAATCAACAACACAGAGCActtcaacaacaaaagaaacaccAAAA
CCGACCCTTCCACCACCAACCTCAAGCACGACAACCACACAACCTTTAGG
AGGTTGTCAAATGCCTCCTGTAAGCGACCGAAAAGAATGCTGGCTCAACA
AAGAAGGCCCATGGGGAAATAACCCAGCTATCGGACCATGGTGTGCCACG
AGTTGTAAAACCGACCCGAGTTGCAATGAACAAATGTGTTGCTGTAAAGG
TTCAACGACTCCCACAACAACTACTACAACGACGACGACGACAATTTCCC
CTACAACAACCTCCAGCACGACCAAGTCATCTACGAAACCAACGACACAA
CGTACAACAACTATCACTCAACCAACAGAGAGCTCTACAACAACCACTCA
GCAGCCTCCCAACACATGTTTCCTTCCAGCCTACGGGAAACGTAAAAACT
GCAAATCTAACCCAAATGGTATTCTTGCAGAATTCAAAGAAATTGATCAA
TTTTGTCGCGCTGGTTGTGAGACCGACCCCAAGTGCTGTGAAGAACTTTG
TTGCTGTGAGGAAAAAGATATGACAACAGACAGCACAACAACCACGACCA
AaccaacgactactacaacACAACCGACAAGCACCACGACAACAACAACC
ATGACCaaaccaacaactactacaactaaatcaaccacaacaacaacaac
tgaGCAGCCATCAGGAGAATGTGAGATGCCAGAACTCTTAGATCGAACTG
AATGTTGGTTGAATGAGGATGGTCCGTTTAAATCGAGTGTTGGAATGCAC
AAATGGTGTATGAACACTTGTGTTGTTGATCCTTCTTGTACGACCCTCTA
CTGCTGTTGTCAGTGAAAATAAAGACACAAAACTTTGAACCATAAAATAT
GGACAATAAAGACAGTCTTCAAATAGGTCATATCATTTATGATTCTCATA
AACTTAGCTCAAATTTTATGGTTATCCTGTAAATAAACGAAATATTATAC
AATTGTGAATTACAGCTTTTGGTGTTAGAGGCATCTAATGTATATCGAAA
AATTTACTATTTGAACAGTATTCATTTATTTGGGaaattttaataacttt
ttacctTTATTATATTGCGAAAGAAACTTTATGATATTATATCTATACCT
CATGTTAATCGCCGAAACATCCCTTAATTCCAAATGAAGATTTGACAAAG
ATATAGAGGTTTTTCAAGTTTACTAAGTTACGTAAATTAAGCCATCAAAG
CAAACGTTCAATTTGCATAAGTA Run BLAST on NCBI transcript from alignment at scaffold_172:14763..18558- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050459 ID=TCONS_00050459|Name=TCONS_00050459|organism=Clytia hemisphaerica|type=transcript|length=3796bp|location=Sequence derived from alignment at scaffold_172:14763..18558- (Clytia hemisphaerica)
ATTACAAACTTCTGGGTGGAAAAAACTTCTTGACAATAAATGCATGATGG
GGAGGTGTTCTTTATACCCATGTAGCACCCCAGTGAGTTCTCTTTCATAT
TTCCTAGATGTAGTTTTAACAAAGTCCTTCCAATAATCAAACTAAACAAT
GGATACAAGAAGAAAGCATTGACATCAACAGATCAAACGAGGAACTTTTG
AAAAACCCCATGCCAAGGTCAATGGACAAATACGAGAACCCAACCAAGTT
GGTTTTGCATGATAATAAACAGCTCCTTTGAAAGGCTAAGCTTCTCCTGT
AGGAACTTAATTATCCTTCAATACAAACACAAGACACCCACTAACGTACG
TACGTGCCTCTATGGACATCTACGATGAAACTCTACGAAGGAGGGAGTAA
TTTGTGTTTATGTGTGGCAATATGGTGAATGAAACACTCCTTCGTAGTGC
TGTTCAGATTAGATATAAAGTGGGTTGACTGGGTTTACAAGGAAGGATAA
ACATAAGGCCAGAACAGAGATACAACGGTGATTTAAGATGAAGGTCTCAA
TCTTGGTCTGTTTTACAGCAATAATATGGATCAGTCTTGTACGTGCGCAA
GCCTCCGATAGACGGGTTTGTTACTACACCAACTGGGCTCAATATCGGAA
TGGAATAGGAAAATACTTTCCATCGGATTATGAAACCGGTTTATGTACAC
ACATTATTTACGCATTTGCGAATGTTCTGGAAGATACAGATGGTTTTTAT
TTGCATCCTTATGAGTGGAACGATCTGCAGCTAGGCTATCCAGGGGTAAG
TACAGTTTTTTTTCTAAAATCAATCGGTTGGAGACGAACAAATCCAGAAA
AAATTATGATAGCTTCAACAATGCATTATGATCTATAACAACTTAATATT
TCTCTCAAACGCATCCAGGTCAACAGTTTGAAGCATAACGATCCACAATT
AAAAACGTTATTGGCGATCGGAGGTTGGAACTTTGGATCAGAAACGTTCT
CAAAATTGGTGTCCGACATTGATGACATGATGGTATTCGCCATTCGCTCC
GCTGACTACTTGCAGTTGCATGGTGAGTTTCTCTCACGTTCGCGCGATGA
TTTCGCGCAGTAGACCACAACGCTGACGTTTTCAATCGAGGTCTATGTGC
ATGGGTGGTTAGCCTGGGTTAGCCACTCTGATGATAATAGTTGAACGGAG
TTTCAACATTATGCATCTTGTCGTCGTGCGTTATTTGGATACAGTCTAAA
CATCTCGGGTTCACAACTAAGTACTTGCCACGTATCTACCAGAGACTTAG
TTAACTTCATGAATTGAATACATACAACAGTGTAACTGATAGTTTCTTTT
CTTTAGAATTCGACGGACTTGATTTGGATTGGGAATACCCCGGACACAGA
GGAAGTCCACCAGAAGATAAACAAAGATTCACAGAATTCTGCCAAATCCT
CAAAGCAGAATATTCATCAAGAGGACTTCTCCTTACAGCCGCTGTTGCTG
CTGGTCCCTCAACCGTCCAAGGGGCGTATGAAATATTACCAATCTCTAAG
GAGTTGGATTTCATCAACTTAATGGCTTATGATTTGTATGGAAGCTGGGG
ACCTTCGACTGGCCACCACACCAATATGAATTCAAACAGCCCACTCAATG
TAATTAGCTCCGTCGAAATATGGCTCGCCTCAGGTATGGACCCTGATAAA
TTAGTCCTGGGACTGGCACCATACGGCCGAACTTTTACTCTATCAGACAA
ATGCAACAATGGCGTTGGAGCACCTTTTATTGCACCTGGCACACCAGGAC
CGTACACAGGTGAAGCTGGCTTCAAAGCGTATTACGAAATTTGTAACAGC
GCCTGGACCAGTAAAGTTTGCACTGGGAATAGCGAGGCTCGAGCACCACA
CGGAGTAGCGAATGGCGTTTGGGTTGGTTTTGATGATGAAGAAAGCGTCG
TGTACAAAGTCAACAATATTGTGAAAGACATGGGTTTAGGAGGAATCATG
TTTTGGGCGCTTGATTTGGATGATTTTACTGGATCATGTGGAGGTGAGAA
ATATCCAATCATAAAGGCAGCAAATCGCGCTTTATTGGAAGAAAATGCAC
CAGTCTTTTCATCATGTCAAGATTTTTCCGATTGCGGAGGAATCAAACCT
ACAACAACATCAACAACGACAAAGTCTACAGTTCGCCCACCAGTTTCTAC
CTCCACTACGACGACTTCCCTTCCTTCAGGAGGTTGCCAAATGCCTCCAG
TAAGTGAACGAAAAGAATGCTGGCTCAACAAAGACGGTCCTTGGGGAAAA
CAACCATCTATTGAACAATGGTGTGCCACGAGTTGTAAAACCGACCCGAG
TTGCAATAAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAA
CTACTACAACCACAACGACTATACCGACAACAACAACAACTTCACCGCTT
ATTTCTCCAACAACAACGACCACAACTCAGTCCACAACGAAATCAACCAC
CCAAAGCACTACACGAAGCTCCACTACCAAATCAACAACACAGAGCACTT
CAACAACAAAAGAAACACCAAAACCGACCCTTCCACCACCAACCTCAAGC
ACGACAACCACACAACCTTTAGGAGGTTGTCAAATGCCTCCTGTAAGCGA
CCGAAAAGAATGCTGGCTCAACAAAGAAGGCCCATGGGGAAATAACCCAG
CTATCGGACCATGGTGTGCCACGAGTTGTAAAACCGACCCGAGTTGCAAT
GAACAAATGTGTTGCTGTAAAGGTTCAACGACTCCCACAACAACTACTAC
AACGACGACGACGACAATTTCCCCTACAACAACCTCCAGCACGACCAAGT
CATCTACGAAACCAACGACACAACGTACAACAACTATCACTCAACCAACA
GAGAGCTCTACAACAACCACTCAGCAGCCTCCCAACACATGTTTCCTTCC
AGCCTACGGGAAACGTAAAAACTGCAAATCTAACCCAAATGGTATTCTTG
CAGAATTCAAAGAAATTGATCAATTTTGTCGCGCTGGTTGTGAGACCGAC
CCCAAGTGCTGTGAAGAACTTTGTTGCTGTGAGGAAAAAGATATGACAAC
AGACAGCACAACAACCACGACCAAACCAACGACTACTACAACACAACCGA
CAAGCACCACGACAACAACAACCATGACCAAACCAACAACTACTACAACT
AAATCAACCACAACAACAACAACTGAGCAGCCATCAGGAGAATGTGAGAT
GCCAGAACTCTTAGATCGAACTGAATGTTGGTTGAATGAGGATGGTCCGT
TTAAATCGAGTGTTGGAATGCACAAATGGTGTATGAACACTTGTGTTGTT
GATCCTTCTTGTACGACCCTCTACTGCTGTTGTCAGTGAAAATAAAGACA
CAAAACTTTGAACCATAAAATATGGACAATAAAGACAGTCTTCAAATAGG
TCATATCATTTATGATTCTCATAAACTTAGCTCAAATTTTATGGTTATCC
TGTAAATAAACGAAATATTATACAATTGTGAATTACAGCTTTTGGTGTTA
GAGGCATCTAATGTATATCGAAAAATTTACTATTTGAACAGTATTCATTT
ATTTGGGAAATTTTAATAACTTTTTACCTTTATTATATTGCGAAAGAAAC
TTTATGATATTATATCTATACCTCATGTTAATCGCCGAAACATCCCTTAA
TTCCAAATGAAGATTTGACAAAGATATAGAGGTTTTTCAAGTTTACTAAG
TTACGTAAATTAAGCCATCAAAGCAAACGTTCAATTTGCATAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00050459-exon-scaffold_172-1575043694:17764..18558 | TCONS_00050459-exon-scaffold_172-1575043694:17764..18558 | Clytia hemisphaerica | exon |
| TCONS_00050459-exon-scaffold_172-1575043694:14763..17640 | TCONS_00050459-exon-scaffold_172-1575043694:14763..17640 | Clytia hemisphaerica | exon |
| TCONS_00050459-exon-scaffold_172-1510915933:17764..18558 | TCONS_00050459-exon-scaffold_172-1510915933:17764..18558 | Clytia hemisphaerica | exon |
| TCONS_00050459-exon-scaffold_172-1510915933:14763..17640 | TCONS_00050459-exon-scaffold_172-1510915933:14763..17640 | Clytia hemisphaerica | exon |
| TCONS_00050459-exon-scaffold_172-1491911889:17764..18558 | TCONS_00050459-exon-scaffold_172-1491911889:17764..18558 | Clytia hemisphaerica | exon |
| TCONS_00050459-exon-scaffold_172-1491911889:14763..17640 | TCONS_00050459-exon-scaffold_172-1491911889:14763..17640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_172 | supercontig | scaffold_172:14763..18558 - |
Blast
BLAST of TCONS_00050459 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 9.846e-61 Identity = 118/268 (44.03%), Postives = 154/268 (57.46%), Query Frame = 3
Query: 1203 NSVTDSFFSLEFDGLDLDWEYPGHRGSPPEDKQRFTEFCQILKAEYSSRG-------LLLTAAVAAGPSTVQGAYEILPISKELDFINLMAYDLYGSWGPSTGHHTNM-------NSNSPLNVISSVEIWLASGMDPDKLVLGLAPYGRTFTLSDKCNNGVGAPFIAPGTPGPYTGEAGFKAYYEICNSAWTSKVCTGNSEARAPHGVANGVWVGFDDEESVVYKVNNIVKDMGLGGIMFWALDLDDFTG-SCGGEKYPIIKAANRAL 1961
NS FDGLDLDWEYPG +GSP DK+RFT Q L + LLL+AAV AG + V YE+ I++ LDF+NLMAYD +GSW TGH++ + + + LNV ++V+ WL G KL+LG+ YGR+FTL+ + VGAP GTPGP+T E G AYYE+C +W + + P+ + WVGFDD ES KV + +K GLGG M WALDLDDF G SC +YP+I+ + L
Sbjct: 121 NSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC--SWKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKV-SYLKQKGLGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQEL 385 HSP 2 Score: 104.375 bits (259), Expect = 3.719e-23 Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 556 VCFTAIIWISLVRAQASDRRVCYYTNWAQYRNGIGKYFPSDYETGLCTHIIYAFANVLEDTDGFYLHPYEWNDLQLGYPGVNSLKHNDPQLKTLLAIGGWNFGSETFSKLVSDIDDMMVFAIRSADYLQ 942
V + + + ++ ++ + VCY+TNWAQYR G ++ P D + LCTH+IYAFA + L EWND L Y N LK +P+LKTLLAIGGWNFG++ F+ +V+ ++ F + +L+
Sbjct: 5 VAWAGFMVLLMIPWGSAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQ----LSTTEWNDETL-YQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLR 128
The following BLAST results are available for this feature:
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