TCONS_00050465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050465
Unique NameTCONS_00050465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1123

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050465 ID=TCONS_00050465|Name=TCONS_00050465|organism=Clytia hemisphaerica|type=transcript|length=1123bp
gtgaaaacaaaaaaataatcaaaaataaataaataatagaaAAATGTCTA
ACAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGC
TTTTTTCCCACAAATGCTTTGGACATGAGTGAAATTCGTGAAGTACCGAA
CAACCAAGAAGTGTTCCATCATCAGAAAACCGATCAAAGTATCATGTTTG
ATATCCTGGAATATCAAGATCAAGTACATGGGAGCGAGGCTATCAaATAT
CATTACATGGACATTGCAGAAGTAAATGATGCCAGTGAAGAAGCAGAAGT
GAACACTGTCGAAGAAAtaccaaaagaaaatttgagcaTTAAAGAATGTT
CACAAGCCTTGTTCTTGCTTGGCAGACAAATGATCTCCAAATATAAAGAA
GGGGCAGATGCAAAAAACTTGGTGAATATTTTGATGGTTTTGTATCGTCT
ACCTCAGTACGAAACTGATCTGTTGATTATCATGAACGACCCTGTTGCTA
TAAGTACAAAAAGTAGTAGCAGTGGTAACAACACAACTCCAAACGATGCT
TCTAAATGgtcggaaaaacttttcaaacagATCGCTTGTTCACTCAAAAT
TGTTGATTCCTCACTCTTTGGCTGATTGAAATGAAAGGTGGACTAAACTG
GATGATGGTGTCGTTGTATTACAAAAATTACCCCTTCACTTCCTGGTATG
AAAAAACATCTGAAAATGACGTTGATTCTTTAGCACGAAGCAACTGCATA
CTGTGTAAAATTGTCCGGAAAAAATGACATTATAATGGGACAtctgaaaa
caaaaacttttttaaaaacgtAGGAAATTATAAGTGCTGCATAAAAGTCA
AGTATAAGAGTTATATGGATGAGTTCGAGTTAAGTCGAGTTAAACTTGAG
ATTTGTAAAGTAGGAGCAGGGCTTTTCACCGTATGGTGTACTACATTTAG
GGTTTATGAGGAGAGAACCACCTTgccaaaaaattcgaaaaattttgaac
taTAGAGCTTAAAATCAAGGAGAAATAATTGTACTATCGTGGTTTGGACA
GAACTACTAACATAATTTCATATTCTTACAAAATGTCTTTACATTTTACC
ACATACAGTACATTTAATTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00050465-protein

>TCONS_00050465-protein ID=TCONS_00050465-protein|Name=TCONS_00050465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MSNKDNGNVRDLFGGALSCFFPTNALDMSEIREVPNNQEVFHHQKTDQSI
MFDILEYQDQVHGSEAIKYHYMDIAEVNDASEEAEVNTVEEIPKENLSIK
ECSQALFLLGRQMISKYKEGADAKNLVNILMVLYRLPQYETDLLIIMNDP
VAISTKSSSSGNNTTPNDASKWSEKLFKQIACSLKIVDSSLFG
Run BLAST on NCBI

transcript from alignment at scaffold_172:80849..88114-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050465 ID=TCONS_00050465|Name=TCONS_00050465|organism=Clytia hemisphaerica|type=transcript|length=7266bp|location=Sequence derived from alignment at scaffold_172:80849..88114- (Clytia hemisphaerica)
GTGAAAACAAAAAAATAATCAAAAATAAATAAATAATAGAAAAATGTCTA
ACAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGC
TTTTTTCCCACAAATGCTTTGGACATGAGGTAAGTGATTATTCATCACCC
GAAAAAAATGCACCGTATNACATATTCTTCTCTTTAAAAAAGCGCTCTGT
ACTTTTTTGGGTTATTGCAAACTCTTTTTTTCTGGTTTGGTATCAAGTCT
CTTTACTTTTAGTATTTTAAATTTTTTTAAATGAGAAAAAGTGTAAATTC
TGTATTCTTGTAAGCAAGGAAATCCACCCAGTTACTAGTGTGAAATAGTT
TTTTCTAGTTGTAAAAAATAACTATTTTGTCTCTTTTCTTCCTTTCACAT
TTCCAGGTTCAGAACAAATTTTTAGCATTATTTTGGTATTTCGACCATAA
TTAGCATCAAACATCAGACACCAATTATTAATTTTATTCCTTATATTCGA
GAAGGTCTATTAGAGTAGAGAGCGTGTTTCTCTCCTGTGTCAAGTTTCAC
TTTATTGTATAGGTGAAAAGTTGAATCATGGCCTCTCTTTCGATCCTCCT
AAGATAAGCTTTCAAATAAGTTCTTGAATGTTATAAATTTACCGTTCTTA
TACAATATAACCACTCTCTTTCATTTTATCTTTCCATTTCAGTGAAAACA
AAAAAATAATCAAAAATAAATAAATAATAGAAAAATGTCTAACAAAGATA
ATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGCTTTTTTCCC
ACAAATGCTTTGGACATGAGGTAAGTGATTATTCATCACCCGAAAAAAAT
GCACCGTATTCCCTTCAATTAAGCACCGCGGCGCTCTTAAAATTTCAGTG
CAGTGCACTTTAAAGGCTATATATATGGATGAAACTTGAAAATGCTCAAT
ACTAAATTTTTGATTTTTCAACCTTTTTAATTCCTGAATATTCACGAGTT
TGTAACGAATAACCCCTTAGATGTTCACAAAATTGACTTCACATCCCTGG
TGTTGTCCGACATCCTCAACCGCAGAAGGAGGGAAGAAGGGTAGAGGATG
ATGCCGGATAGGGAAATCGTTGCGCTTAGAATACACAATTGCCCCTGTGT
CCACGATACAACCGAACCATGGTTTAATGGTGACATCAATCAAACAAGTG
GGTAGAAAGCGTGCTTATTCAACGTCATAGTCTTGTATAGAGTATGGTAC
CCAGTCCCCTCCACATGATCTCTGGTTGATTTAGGTGGGGGTATATTTAT
CTACCAAGTGAATTTCAGTACTGAGTGGACATAGAACCAATACCTCCCAT
CTGGGAGCCGATGCGCCTACAATTTCTTTCTCTTTCTGGAAAAGCCCTAG
GATACAAGAACATATAGTTGACGCTCTCTAATCCGATTTTCAATGGGATT
TTCAAAGTGACTTTCAATATTATTGAATAATGGAGCGTATCGAACAGTAG
AACGTCGAATTAGAGAGCTTCAACTGTATATTTATTTAAACAGTGAAATT
CGTGAAGTACCGAACAACCAAGAAGTGTTCCATCATCAGAAAACCGATCA
AAGTATCATGTTTGATATCCTGGAATATCAAGATCAAGTACATGGGAGCG
AGGCTATCAAGTAATTTTGTATTTTTCACGAAAACTTCAATCCTTATTAT
TCTTTGCGAGCTACCGGGTGTGCCACAAAAAAGTTTCTCTCTTTGAAACT
AATTTTCTCGAAATCTAAATATTTTAAAAGAACCATTTCTATTTCATTAG
AGAAAAGAAAGATAAACTTACATTATGATGGGTCATTTATTGAATTCGAT
TCATTAGATCAAAAGTTATGCTCAATTCAATAAAAAGGTTACTTTCAGAA
AGTGCTCGAAAACGTAAAAAATCGCCCTATCCCTAGGGGCAGTAATTTTT
TGTGGCACACCCTGTATTGAAGCTAACAGTGAGACGAGATCACAGATTTC
TTACAGTTAGTGGACACTAAAGCGCAACGTGCATTCTTAATTATATCGAC
ATTTTCTCAATNCCCTGTATTGAAGCTAACGGTGAGACGAGATCACAGAT
TTCTTACAGTTAGTGGACACTAAAGCGCAACGTGCATTCTTAATTATATC
GACATTTTCTCAATGCAACAGATATCATTACATGGACATTGCAGAAGTAA
ATGATGCCAGTGAAGAAGCAGAAGTATTTTGATTATTGAGTATTTTTCAT
CAATTTTAATTTTCTCAGCATATTCGATGGTTTTCCTATTTTGGTACCCT
TTGCTCAGACTGTTATTGAAGACTCCAGGGTATTAAGGTGGGGTCTAAAT
GCTTGCAACGTTACAAATCTGCCTCACAAGCTCATTTTGGGCTCAAAAGA
AGCGTATAACTAAGTAGAATAAGATTCAGTCTAGGCAGATGTTTTATGAT
TTAGAAATTTAGCGTAATTCGCAAAAAACCTTCATTTTGCTAGGGGGGGG
GTACCAAGTTGTGTTACTGGACCAGTGCCGAAAAGTTGTACTTTCTTGTT
TTTTGAGACCACCACCACTTAGTACCCTGGTACTAAGTTGAATTTACCCC
TTAAAATAGGTTTACCACCCCTTAGTACCCGGTACAATCTTGATATCACC
ATTGAGAAATGACACACCACTGTTAAGTACCCTGTACTAAGTTGATTTTC
CCCCTCAAAATAGGTATACCACCCTTTAATTCTTAGTAATGGTACTTTCT
GGTACACCTCCTTTAAATTTTCTAAAAAACATCAAACAATACCCGTTCAA
GTACAGAAATCGGCCATACTCGCTTAAAAGTCTTCTACATAGTTTTTCAA
GAGCTTTCAGATTCTATAATTGGTTTTGGCCTAAAATGAGTTCGAAATTT
CCATAAAAAATGAGCTCTTGGGCTTTACCCTAGGTTTTCAATAAATGGGT
CCAGAAATAACAACCCTTAAATATTTTCTGGGCCGCTCTTCTAATATCAA
TCCACAGGGTATTAGGCATGTCTGGTCCAAGTTTAGTGCTTTGTTTCAAA
TTTGCACGATAATTACACCGATCAGGCCTACTATGATAACACCCAGGGGA
AAACAAAAATTTGATAAACAATAAACGTAATAAACATCCTAATAAAATGG
TAAGAAATGAATATAGACTGCCTATAACAAGAATTTTTTTGTGATTTTTC
AGGATTTTGAGTACCAGATACTAACTCGATGCCTCATATTTGGTATTGAG
ACCACCATTTAGTCCCTTGATACAAAGTTGCAAAAATGTTTTTTTAAATT
AGGACCACCACTTAGTACCATGTACTAAGTTGTTTTTTACTTACCTTATC
AAACCACCACCCGGTACTGGCCCCCACAACTTAGTACCAACCCCCCCTGA
TTTTGCGTAAATTTTTGCTATTTTGAGATGACGTCATAAAAATTTAAATT
CTTATAACTTTTGATATAATAAATAATAATAAATAAATAAATAAATTGTA
CCATCCCCTAAGGGGAATTGGCCTAAAAATTGTTAGGAAAAAAAAACTAA
CAAATTTAGGATATTCATTGCGCTGCTAGGTAAAGAAAAAAATCAAGAAA
TTATATTGCAAGCATCTCTCCAGTTGTTCCTGTCCATAGCGAGATTATAC
CAGTTGTCTTTATCAATATTAGCCTTTTTAAGAGCTTTAAACAAAGAGCG
ACCGTAAGTCATTTCGGGAGAACCCCGCGGTCGTTTTTCACTGACCCACG
ACGAAATCATTTTCCTTGGTAGACGATTCATATCCATGCGTACAACATGG
CCAGCCCATCTTAACTGCCTTTTAACAATATAAGAATCGATACATTTGAC
ATCAAGACGATTAAACAAATTCTCATTCGAAATATGCTTTTCAAAAACAT
CAATCATATTTACTCCACACATAGCTCTTACACATCTATTGTGAAAGGAG
CGCAACCATCGATATAACTCCTCTGTCAGACACCAAGATTCTGATCCATA
AAGTAGGATCGACAATATAAGGGATTCATAAACCTTCCCTTTCACTTTCA
AATTTAATTTTACATTTCCGAAGATACATTTCTTCAACGAACCAAACATA
TTTCCCGCTTTTTTAACTCGAAGTAGCACATCTTCTCGATCGGAACAATC
GCCAGTGATAACAGATCCAAGATAGGTAAATCTATCTACGACAGGGAAGA
AATAATTATCGGAATAAATTGAAATTTTGACCAAAAATGCACAATCCTGA
CGTCATCATGCTTTTAAAAAAATTTTGAAATGTTTTTAAAATCTGCATAA
AAATGCATCTTTGGTCAAAATATGAAATTATTTTGATGATTTTATCAAAA
GTTATTAGAATTTCAATTTTTATGACGTCATCAAAATAGCGCAAAATTGA
AGCTTTTTGCGAATTACGCTAAATTTCTAAATCATGAAACATCTGCCTAG
ACTGAATCTTATTCAATTAGTTATACGCTTCTTTTGAGCCCAAAATGAGC
TTGTGAGAAAGATTTTTAACGTTGCAAGAATTTTGACCTCAACGAACCCG
CCTTATTACCCTGGAGGAGGAGTAGGGAGAGTATTTAAGAGAACTAAACA
CCAGGGCTTTTCAAACTGCACATTATAACTTATCAAGTAATAAGGAACTA
ACTTACAATTGCTACACGGTGTTTCCTGCTGGCGCAATCTTTATTTCAAT
CCATTATAACTTATAATATAATATAAGTAGACATTTAGAATTATTCTCAA
TACATCGGTGAGACAAATGAATCTTCTAGTTTCTCGATGTAATATCCTTT
TCTTTCTCATAAATCGTGAGCTTCCAGTCAAAGTAAAGCTTTCTAAGAGC
CATCTTTCCTGAATTTACCCATCACCTGTTTAGGTAAACTTTTTAATAAA
TCAATGCGTTAACTAAACCCATAAATTTGGGTTTTTGGCTAAATGGTACG
CATTTTCTTTTTAGATACTCTATGTTTCATTCCCTTCCCTTTAGGTGAAC
ACTGTCGAAGAAATACCAAAAGAAAATTTGAGCATTAAAGAGTAAGTATA
CTTTGCAAGCGCTCAATAAAAACACTGTCTCTCTGGGATTTTATTACCCC
CGTTTGAACCTCTGGAGAGATTTGGTATTGACATGGTGAGGTGGAGTTCA
GGGTCCAACTGTTGAAAATCGTTTAATAGTATAATGAGAAGAATCATGAA
TATTCTTTCTTCGTTGTAGATGTTCACAAGCCTTGTTCTTGCTTGGCAGA
CAAATGATCTCCAAATATAAAGAAGGGGTAAGAAAAATTTGTGTTATCGA
TGATAGCTTGATGGAAGATTTGCAAGAGATGCCATAAATCCCGTATACTA
TATATCCCACATTTTATCCCTCGGAATGCTAACAAACGTCTTTCAGTTGT
TAAGCAATTTCTACCGTGACAGAGCCACGAGAAAACATAAAGGGATGCTT
TTATTCAAAACTACTCTAAGGTCCCGAATAGACGTCCCGCTTATTAATTT
TCGAAAACTTTTCGGACTCCCCCCCTCCCGTTTATTAATTTTCTAGTTTT
TTGTTTTTGAGTTGAAGTGTAAATCAGGCTTAATCCATTTCGAACGTTCG
AAAATGAAAATTCATAGAAGTAGGTAAAAGGAAACTTCTAAATATTTTCA
GACCCCCCCGTTTATTCAGACCCCCCCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCGTTTATTCAGAC
CCCCCCGTTTATTATATTTTGCAAAAATTTCGGACCCCCCCTTTTATTCA
GACCCCCCTACTATTCGGGACCTTAGAGTAGTCAAATACTCGTTCCTGAA
GGCCTACTTGCAAATTCTAATAAGTGATTGCTCTGGATTGCTTGAATAGA
ATCACTCTATAAAATTCAATTTCTCACAACTAAAAAGTCTTTTTTTAGTT
CTTAGTATCATTGTTTGGGTTGCTGATGGCAAAGGCGAGCATTTAAATTT
AGCAAAATTGTGTTATCTGTTTGAACGTCTAAGCGAAAGAAAAATCTTAT
CAAAAATATTCTGATCGAATTTTGTTAATCCTTGTTGTTATTACTGCAGG
CAGATGCAAAAAACTTGGTGAATATTTTGATGGTTTTGTATCGTCTACCT
CAGTACGAAACTGATCTGTTGATTATCATGAACGACCCTGTTGCTATAAG
GTACCTCTCTAATTCTTATTTTGACTTTTAAACCCAGCAGGCACACAACG
TCGTTTCAACGTTCATCTAATGTTCACAACGTCATATAACGTTAGATGAA
CGTTGTTACAACGTCGTGTGCTAGCTGGAAATGTATTTATAATTAATTCT
CAATCATGTCATCAATTTTTACTTATCAGTGGGACTACAATCAGAGATAT
CTGCTTATCTTTTGTCTTTCTTGCCTAAATGTGTGTCTGTATCCAAACTG
TAGATAGACTGGATAATTAAAAAAATCTTTACTCTTTCCTAGACTGATGC
CTGGGATACGAAAATAGTAGAATATAGGTCATTTCGATCATTTCAGAACC
CATCATCCAACGTTATTGTCAACTTTTTTTCCCCCGTTTTTTTACAGTAC
AAAAAGTAGTAGCAGTGGTAACAACACAACTCCAAACGATGCTTCTAAAT
GGTCGGAAAAACTTTTCAAACAGATCGCTTGTTCACTCAAAATTGTTGAT
TCCTCACTCTTTGGCTGATTGAAATGAAAGGTGGACTAAACTGGATGATG
GTGTCGTTGTATTACAAAAATTACCCCTTCACTTCCTGGTATGAAAAAAC
ATCTGAAAATGACGTTGATTCTTTAGCACGAAGCAACTGCATACTGTGTA
AAATTGTCCGGAAAAAATGACATTATAATGGGACATCTGAAAACAAAAAC
TTTTTTAAAAACGTAGGAAATTATAAGTGCTGCATAAAAGTCAAGTATAA
GAGTTATATGGATGAGTTCGAGTTAAGTCGAGTTAAACTTGAGATTTGTA
AAGTAGGAGCAGGGCTTTTCACCGTATGGTGTACTACATTTAGGGTTTAT
GAGGAGAGAACCACCTTGCCAAAAAATTCGAAAAATTTTGAACTATAGAG
CTTAAAATCAAGGAGAAATAATTGTACTATCGTGGTTTGGACAGAACTAC
TAACATAATTTCATATTCTTACAAAATGTCTTTACATTTTACCACATACA
GTACATTTAATTTAAA

Coding sequence (CDS) from alignment at scaffold_172:80849..88114-

>TCONS_00050465 ID=TCONS_00050465|Name=TCONS_00050465|organism=Clytia hemisphaerica|type=CDS|length=4074bp|location=Sequence derived from alignment at scaffold_172:80849..88114- (Clytia hemisphaerica)
TACAAAAAGTAGTAGCAGTGGTAACAACACAACTCCAAACGATGCTTCTA
AATGGTCGGAAAAACTTTTCAAACAGATCGCTTGTTCACTCAAAATTGTT
GATTCCTCACTCTTTGGCTGAGCAGATGCAAAAAACTTGGTGAATATTTT
GATGGTTTTGTATCGTCTACCTCAGTACGAAACTGATCTGTTGATTATCA
TGAACGACCCTGTTGCTATAAGATGTTCACAAGCCTTGTTCTTGCTTGGC
AGACAAATGATCTCCAAATATAAAGAAGGGGTGAACACTGTCGAAGAAAT
ACCAAAAGAAAATTTGAGCATTAAAGAATATCATTACATGGACATTGCAG
AAGTAAATGATGCCAGTGAAGAAGCAGAATGAAATTCGTGAAGTACCGAA
CAACCAAGAAGTGTTCCATCATCAGAAAACCGATCAAAGTATCATGTTTG
ATATCCTGGAATATCAAGATCAAGTACATGGGAGCGAGGCTATCAAATGT
CTAACAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGT
TGCTTTTTTCCCACAAATGCTTTGGACATGAGTACAAAAAGTAGTAGCAG
TGGTAACAACACAACTCCAAACGATGCTTCTAAATGGTCGGAAAAACTTT
TCAAACAGATCGCTTGTTCACTCAAAATTGTTGATTCCTCACTCTTTGGC
TGAGCAGATGCAAAAAACTTGGTGAATATTTTGATGGTTTTGTATCGTCT
ACCTCAGTACGAAACTGATCTGTTGATTATCATGAACGACCCTGTTGCTA
TAAGATGTTCACAAGCCTTGTTCTTGCTTGGCAGACAAATGATCTCCAAA
TATAAAGAAGGGGTGAACACTGTCGAAGAAATACCAAAAGAAAATTTGAG
CATTAAAGAATATCATTACATGGACATTGCAGAAGTAAATGATGCCAGTG
AAGAAGCAGAATGAAATTCGTGAAGTACCGAACAACCAAGAAGTGTTCCA
TCATCAGAAAACCGATCAAAGTATCATGTTTGATATCCTGGAATATCAAG
ATCAAGTACATGGGAGCGAGGCTATCAAATGTCTAACAAAGATAATGGGA
ACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGCTTTTTTCCCACAAAT
GCTTTGGACATGAGTACAAAAAGTAGTAGCAGTGGTAACAACACAACTCC
AAACGATGCTTCTAAATGGTCGGAAAAACTTTTCAAACAGATCGCTTGTT
CACTCAAAATTGTTGATTCCTCACTCTTTGGCTGAGCAGATGCAAAAAAC
TTGGTGAATATTTTGATGGTTTTGTATCGTCTACCTCAGTACGAAACTGA
TCTGTTGATTATCATGAACGACCCTGTTGCTATAAGATGTTCACAAGCCT
TGTTCTTGCTTGGCAGACAAATGATCTCCAAATATAAAGAAGGGGTGAAC
ACTGTCGAAGAAATACCAAAAGAAAATTTGAGCATTAAAGAATATCATTA
CATGGACATTGCAGAAGTAAATGATGCCAGTGAAGAAGCAGAATGAAATT
CGTGAAGTACCGAACAACCAAGAAGTGTTCCATCATCAGAAAACCGATCA
AAGTATCATGTTTGATATCCTGGAATATCAAGATCAAGTACATGGGAGCG
AGGCTATCAAATGTCTAACAAAGATAATGGGAACGTTCGAGATTTGTTCG
GAGGGGCTTTAAGTTGCTTTTTTCCCACAAATGCTTTGGACATGAGTACA
AAAAGTAGTAGCAGTGGTAACAACACAACTCCAAACGATGCTTCTAAATG
GTCGGAAAAACTTTTCAAACAGATCGCTTGTTCACTCAAAATTGTTGATT
CCTCACTCTTTGGCTGAGCAGATGCAAAAAACTTGGTGAATATTTTGATG
GTTTTGTATCGTCTACCTCAGTACGAAACTGATCTGTTGATTATCATGAA
CGACCCTGTTGCTATAAGATGTTCACAAGCCTTGTTCTTGCTTGGCAGAC
AAATGATCTCCAAATATAAAGAAGGGGTGAACACTGTCGAAGAAATACCA
AAAGAAAATTTGAGCATTAAAGAATATCATTACATGGACATTGCAGAAGT
AAATGATGCCAGTGAAGAAGCAGAATGAAATTCGTGAAGTACCGAACAAC
CAAGAAGTGTTCCATCATCAGAAAACCGATCAAAGTATCATGTTTGATAT
CCTGGAATATCAAGATCAAGTACATGGGAGCGAGGCTATCAAATGTCTAA
CAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGCT
TTTTTCCCACAAATGCTTTGGACATGAGTACAAAAAGTAGTAGCAGTGGT
AACAACACAACTCCAAACGATGCTTCTAAATGGTCGGAAAAACTTTTCAA
ACAGATCGCTTGTTCACTCAAAATTGTTGATTCCTCACTCTTTGGCTGAG
CAGATGCAAAAAACTTGGTGAATATTTTGATGGTTTTGTATCGTCTACCT
CAGTACGAAACTGATCTGTTGATTATCATGAACGACCCTGTTGCTATAAG
ATGTTCACAAGCCTTGTTCTTGCTTGGCAGACAAATGATCTCCAAATATA
AAGAAGGGGTGAACACTGTCGAAGAAATACCAAAAGAAAATTTGAGCATT
AAAGAATATCATTACATGGACATTGCAGAAGTAAATGATGCCAGTGAAGA
AGCAGAATGAAATTCGTGAAGTACCGAACAACCAAGAAGTGTTCCATCAT
CAGAAAACCGATCAAAGTATCATGTTTGATATCCTGGAATATCAAGATCA
AGTACATGGGAGCGAGGCTATCAAATGTCTAACAAAGATAATGGGAACGT
TCGAGATTTGTTCGGAGGGGCTTTAAGTTGCTTTTTTCCCACAAATGCTT
TGGACATGAGTACAAAAAGTAGTAGCAGTGGTAACAACACAACTCCAAAC
GATGCTTCTAAATGGTCGGAAAAACTTTTCAAACAGATCGCTTGTTCACT
CAAAATTGTTGATTCCTCACTCTTTGGCTGAGCAGATGCAAAAAACTTGG
TGAATATTTTGATGGTTTTGTATCGTCTACCTCAGTACGAAACTGATCTG
TTGATTATCATGAACGACCCTGTTGCTATAAGATGTTCACAAGCCTTGTT
CTTGCTTGGCAGACAAATGATCTCCAAATATAAAGAAGGGGTGAACACTG
TCGAAGAAATACCAAAAGAAAATTTGAGCATTAAAGAATATCATTACATG
GACATTGCAGAAGTAAATGATGCCAGTGAAGAAGCAGAATGAAATTCGTG
AAGTACCGAACAACCAAGAAGTGTTCCATCATCAGAAAACCGATCAAAGT
ATCATGTTTGATATCCTGGAATATCAAGATCAAGTACATGGGAGCGAGGC
TATCAAATGTCTAACAAAGATAATGGGAACGTTCGAGATTTGTTCGGAGG
GGCTTTAAGTTGCTTTTTTCCCACAAATGCTTTGGACATGAGTACAAAAA
GTAGTAGCAGTGGTAACAACACAACTCCAAACGATGCTTCTAAATGGTCG
GAAAAACTTTTCAAACAGATCGCTTGTTCACTCAAAATTGTTGATTCCTC
ACTCTTTGGCTGAGCAGATGCAAAAAACTTGGTGAATATTTTGATGGTTT
TGTATCGTCTACCTCAGTACGAAACTGATCTGTTGATTATCATGAACGAC
CCTGTTGCTATAAGATGTTCACAAGCCTTGTTCTTGCTTGGCAGACAAAT
GATCTCCAAATATAAAGAAGGGGTGAACACTGTCGAAGAAATACCAAAAG
AAAATTTGAGCATTAAAGAATATCATTACATGGACATTGCAGAAGTAAAT
GATGCCAGTGAAGAAGCAGAATGAAATTCGTGAAGTACCGAACAACCAAG
AAGTGTTCCATCATCAGAAAACCGATCAAAGTATCATGTTTGATATCCTG
GAATATCAAGATCAAGTACATGGGAGCGAGGCTATCAAATGTCTAACAAA
GATAATGGGAACGTTCGAGATTTGTTCGGAGGGGCTTTAAGTTGCTTTTT
TCCCACAAATGCTTTGGACATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031958XLOC_031958Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050465-proteinTCONS_00050465-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050465-exon-scaffold_172-1575043694:87986..88114TCONS_00050465-exon-scaffold_172-1575043694:87986..88114Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1575043694:86455..86571TCONS_00050465-exon-scaffold_172-1575043694:86455..86571Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1575043694:85892..85943TCONS_00050465-exon-scaffold_172-1575043694:85892..85943Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1575043694:83074..83120TCONS_00050465-exon-scaffold_172-1575043694:83074..83120Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1575043694:82838..82895TCONS_00050465-exon-scaffold_172-1575043694:82838..82895Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1575043694:81865..81965TCONS_00050465-exon-scaffold_172-1575043694:81865..81965Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1575043694:80849..81467TCONS_00050465-exon-scaffold_172-1575043694:80849..81467Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:87986..88114TCONS_00050465-exon-scaffold_172-1510915933:87986..88114Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:86455..86571TCONS_00050465-exon-scaffold_172-1510915933:86455..86571Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:85892..85943TCONS_00050465-exon-scaffold_172-1510915933:85892..85943Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:83074..83120TCONS_00050465-exon-scaffold_172-1510915933:83074..83120Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:82838..82895TCONS_00050465-exon-scaffold_172-1510915933:82838..82895Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:81865..81965TCONS_00050465-exon-scaffold_172-1510915933:81865..81965Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1510915933:80849..81467TCONS_00050465-exon-scaffold_172-1510915933:80849..81467Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:87986..88114TCONS_00050465-exon-scaffold_172-1491911889:87986..88114Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:86455..86571TCONS_00050465-exon-scaffold_172-1491911889:86455..86571Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:85892..85943TCONS_00050465-exon-scaffold_172-1491911889:85892..85943Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:83074..83120TCONS_00050465-exon-scaffold_172-1491911889:83074..83120Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:82838..82895TCONS_00050465-exon-scaffold_172-1491911889:82838..82895Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:81865..81965TCONS_00050465-exon-scaffold_172-1491911889:81865..81965Clytia hemisphaericaexon
TCONS_00050465-exon-scaffold_172-1491911889:80849..81467TCONS_00050465-exon-scaffold_172-1491911889:80849..81467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:80849..88114 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.84596	10.7226	8.46492	6.84468	6.39745	4.51561	6.33379	6.79954	6.64122	5.86039	4.96596	5.67982	5.34469	5.28122	6.461	7.84332	7.70488	9.65195	3.08429	3.46906	7.18077	5.75145	6.4597	4.63538	6.73103	6.96304	3.92924	3.31721	4.86587	5.44844
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007681Mog1
IPR016123Mog1/PsbP_a/b/a-sand
Blast
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BLAST of TCONS_00050465 vs. Swiss-Prot (Human)
Match: MOG1 (Ran guanine nucleotide release factor OS=Homo sapiens GN=RANGRF PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 5.076e-33
Identity = 70/183 (38.25%), Postives = 101/183 (55.19%), Query Frame = 2 
Query:   77 LFGGALSCFFPTNALDMSEIREVPNNQEVFHHQKTDQSIMFDILEYQDQVHGSEAIKYHYMDIAEVNDASEEAEVNTVEEIPKENLSIK-ECSQALFLLGRQMISKYKEGADAKNLVNILMVLYRLPQYETDLLIIMNDPVAIXXXXXXXXXXXXXXDASKWSEKLFKQIACSLKIVDSSLFG 622
            LFGGA S   P  A+D+S++R VP+NQEVF H  TDQS++ ++LE Q  V G  A +YH+ D+  V  A     V +V+ +  ENL+++  C +A  L G+Q I+  KE       V +   L RLPQY+TDLL+  N P       + S         + WS   F+Q+  SL + D ++FG
Sbjct:    9 LFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRGEAAARYHFEDVGGVQGA-RAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIA--KENQQVAKDVTLHQALLRLPQYQTDLLLTFNQPPP----DNRSSLGPENLSPAPWSLGDFEQLVTSLTLHDPNIFG 184
The following BLAST results are available for this feature:
BLAST of TCONS_00050465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MOG15.076e-3338.25Ran guanine nucleotide release factor OS=Homo sapi... [more]
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